Singlet Excited States and the Light-Harvesting Function of Carotenoids in Bacterial Photosynthesis

Abstract— The recent results of stationary-state and time-resolved absorption, fluorescence and Raman spectroscopies of some typical carotenoids are summarized. Theoretical analyses of carotenoid singlet states and of carotenoid-to-bacteriochlorophyll singlet-energy transfer are also included. On the bases of the energies, the lifetimes and other properties of singlet excited states of the carotenoids in solution and bound to the light-harvesting complexes, the energetics and the dynamics of the light-harvesting function in purple photosynthetic bacteria are discussed with emphasis on the 2A_g and B_u⁺ states.     

柠檬酸铝溶液中铝的形态研究

采用27Al NMR法、渗析法与原子吸收分光光度法,研究了柠檬酸铝(AlCit)溶液中铝的形态及pH值的影响.结果表明,在AlCit溶液中存在两种形态的Al,一种是分子态AlCit,另一种是胶态Al, pH值增加时,分子态AlCit的量减少而胶态Al的量增加.     

A computational study of nicotine conformations in the gas phase and in water

The conformational preferences of nicotine in three protonation states and in the gas phase as well as aqueous solution are investigated using several computational procedures. Conformational aspects emphasized are N-methyl stereochemistry, relative rotation of the pyridine and pyrrolidine rings, and pyrrolidine ring conformation. All methods consistently predicted that the N-methyl trans species are most stable for all protonation states in both gas phase and in water. However, the cis/trans energy gap is significantly reduced in water. Additionally, the two pyridine ring rotamers, which are energetically equivalent in the gas phase, experience different solvation energies in water.     

Solution-phase electronegativity scale: insight into the chemical behaviors of metal ions in solution

By incorporating the solvent effect into the Born effective radius, we have proposed an electronegativity scale of metal ions in aqueous solution with the most common oxidation states and hydration coordination numbers in terms of the effective ionic electrostatic potential. It is found that the metal ions in aqueous solution are poorer electron acceptors compared to those in the gas phase. This solution-phase electronegativity scale shows its efficiency in predicting some important properties of metal ions in aqueous solution such as the aqueous acidities of the metal ions, the stability constants of metal complexes, and the solubility product constants of the metal hydroxides. We have elaborated that the standard reduction potential and the solution-phase electronegativity are two different quantities for describing the processes of metal ions in aqueous solution to soak up electrons with different final states. This work provides a new insight into the chemical behaviors of the metal ions in aqueous solution, indicating a potential application of this electronegativity scale to the design of solution reactions.     

Excited state properties of 7-hydroxy-4-methylcoumarin in the gas phase and in solution. A theoretical study

TDDFT/B3LYP and RI-CC2 calculations with different basis sets have been performed for vertical and adiabatic excitations and emission properties of the lowest singlet states for the neutral (enol and keto), protonated and deprotonated forms of 7-hydroxy-4-methylcoumarin (7H4MC) in the gas phase and in solution. The effect of 7H4MC-solvent (water) interactions on the lowest excited and fluorescence states were computed using the Polarizable Continuum Method (PCM), 7H4MC-water clusters and a combination of both approaches. The calculations revealed that in aqueous solution the pi pi* energy is the lowest one for excitation and fluorescence transitions of all forms of 7H4MC studied. The calculated excitation and fluorescence energies in aqueous solution are in good agreement with experiment. It was found that, depending on the polarity of the medium, the solvent shifts vary, leading to a change in the character of the lowest excitation and fluorescence transition. The dipole-moment and electron-density changes of the excited states relative to the ground state correlate with the solvation effect on the singlet excited states and on transition energies, respectively. The calculations show that, in contrast to the ground state, the keto form has a lower energy in the pi pi* state as compared to enol, demonstrating from this point of view the energetic possibility of proton transfer from the enol to the keto form in the excited state.     

On the SCF calculation of excited states: Singlet states in the two-electron problem

The problem of determining SCF wave functions for excited electronic states is examined for singlet states of two-electron systems using a Lowdin natural orbital transformation of the full CI wave function. This analysis facilitates the comparison of various SCF methods with one another. The distribution of the full CI states among the natural orbital MCSCF states is obtained for the S states of helium using a modest Gaussian basis set. For SCF methods that are not equivalent to the full CI wave functions, it is shown that the Hartree-Fock plus all single excitation wave functions are equivalent to that of Hartree-Fock plus one single excitation. It is further shown that these wave functions are equivalent to the perfect pair or TCSCF wave functions in which the CI expansion coefficients are restricted to have opposite signs. The case of the natural orbital MCSCF wave function for two orbitals is examined in greater detail. It is shown that the first excited state must always be found on the lower natural orbital MCSCF CI root, thus precluding the use of the Hylleras-Undeim-MacDonald (HUM) theorem in locating this state. It is finally demonstrated that the solution obtained by applying the HUM theorem (minimizing the upper MCSCF CI root with respect to orbital mixing parameters) is an artifact of the MCSCF method and does not correspond to any of the full CI states.     

Temperature Induced Aggregation of Organic Semiconductors

One important feature of organic semiconductors is their solution processability, which allows researchers to tune their aggregation states in solution and solid states and to control the processing conditions to reach desirable electronic and optoelectronic properties. Temperature is one of the most important processing parameters of organic semiconductors and has been studied extensively particularly for those conjugated small- and macro- molecules with strong temperature-dependent aggregation properties. This minireview summarizes the temperature-induced aggregation behaviors of organic semiconductors in solution, during solution casting and upon thermal annealing post-treatment of solid-state thin films. The influences of different aggregation states on the optoelectronic properties, in particular the photovoltaic properties, are discussed. The conclusions in this work will provide a rational guide to precisely control the aggregation states of organic semiconductors to fabricate high-performance optoelectronic devices.     

Time resolved fluorescence in the picosecond region

Time resolved fluorescence studies of four organic molecules in solution show that, contrary to an earlier report, the relaxed fluorescent S₁ states are formed within 10 ps of excitation even when excitation is to higher states. Fluorescence lifetimes for fluorescein and its halogen substituted derivatives vary over a factor of 40 owing to enhanced intersystem crossing. Measured radiative lifetimes agree with those calculated from integrated absorption intensities and are relatively constant.     

Comparison of the Time-resolved Absorption and Phosphorescence from the Tryptophan Triplet State in Proteins in Solution

Measurement of the room temperature Trp triplet state lifetime in proteins by time-resolved phosphorescence can provide valuable information on the structure and dynamics of proteins in solution. Our time-resolved absorption measurements on the long-lived states resulting from electronic excitation of the chromophore demonstrate the presence of more complex behavior than revealed by time-resolved phosphorescence. To provide additional insight into this behavior, a comparative study of time-resolved transient absorption and time-resolved phosphorescence of proteins in solution was carried out. The results show that the time evolution of the long-lived states observed through transient absorption often differs considerably from that observed in time-resolved phosphorescence. In some proteins, the presence of competing reactions complicates the interpretation of the transient absorption measurements (which may affect the phosphorescence yield). A more complete characterization of these processes will likely prove useful in the study of protein structure and dynamics in solution.     

Electronic excitations of green fluorescent proteins: protonation states of chromophore model compound in solutions

Green fluorescent proteins (GFPs) are widely used as tools in biochemistry, cell biology, and molecular genetics due to their unusual optical spectroscopic characteristics. The spectrophotometric and fluorescence properties of GFPs are controlled by the protonation states and possibly cis-trans isomerization of the chromophore (p-hydroxybenzylideneimidazolinone). In this work, we have investigated electronic structures, liquid structures, and solvent shifts of the three possible protonated states (neutral, anionic, and zwitterionic) and their cis-trans isomerization of a model compound 4'-hydroxybenzylidene-2-methyl-imidazolin-5-one-3-acetate (HBMIA) in aqueous solutions. Our calculated results suggest that HBMIA could adopt both cis and trans conformations in a solution, and it exists in three different protonation states depending on the pH conditions. The absorption spectrum observed in neutral solution is thus assigned to the electronic excitations within the neutral form and the cis isomer of the zwitterionic form, while the absorption band at 425 nm in the basic solution is due to the excitations within the anionic form and the trans isomer of the zwitterionic form. Some technical problems related to the computation of electronic excitations within the HBMIA at the anionic state are also discussed.     

压力诱导溶液中蛋白质构象变化的谱学研究

高压诱导蛋白质发生构象变化,引起蛋白质去折叠,并在某种条件下发生聚集,其结果是蛋白质原有的构造被破坏、发生变性。这些过程与蛋白质本身的结构密切相关。同时,折叠中间体结构的揭示对于研究蛋白质去折叠过程也具有重要意义。本文综述了高压诱导下多种谱学方法用于蛋白质构象变化的研究进展,主要包括高压红外光谱、高压荧光光谱及高压小角X射线扫描等多种技术手段在研究中蛋白质构象变化方面所能提供的重要信息,并对相关领域存在的问题及今后的发展作出展望。     

Linking the historical and chemical definitions of diabatic states for charge and excitation energy transfer reactions in condensed phase

Marcus theory of electron transfer (ET) and Fo?rster theory of excitation energy transfer (EET) rely on the Condon approximation and the theoretical availability of initial and final states of ET and EET reactions, often called diabatic states. Recently [Subotnik et al., J. Chem. Phys. 130, 234102 (2009)], diabatic states for practical calculations of ET and EET reactions were defined in terms of their interactions with the surrounding environment. However, from a purely theoretical standpoint, the definition of diabatic states must arise from the minimization of the dynamic couplings between the trial diabatic states. In this work, we show that if the Condon approximation is valid, then a minimization of the derived dynamic couplings leads to corresponding diabatic states for ET reactions taking place in solution by diagonalization of the dipole moment matrix, which is equivalent to a Boys localization algorithm; while for EET reactions in solution, diabatic states are found through the Edmiston-Ruedenberg localization algorithm. In the derivation, we find interesting expressions for the environmental contribution to the dynamic coupling of the adiabatic states in condensed-phase processes. In one of the cases considered, we find that such a contribution is trivially evaluable as a scalar product of the transition dipole moment with a quantity directly derivable from the geometry arrangement of the nuclei in the molecular environment. Possibly, this has applications in the evaluation of dynamic couplings for large scale simulations.     

Solution Dependence of the Collisional Activation of Ubiquitin [M + 7H]7+ Ions

The solution dependence of gas-phase unfolding for ubiquitin [M + 7H]⁷⁺ ions has been studied by ion mobility spectrometry-mass spectrometry (IMS-MS). Different acidic water:methanol solutions are used to favor the native (N), more helical (A), or unfolded (U) solution states of ubiquitin. Unfolding of gas-phase ubiquitin ions is achieved by collisional heating and newly formed structures are examined by IMS. With an activation voltage of 100 V, a selected distribution of compact structures unfolds, forming three resolvable elongated states (E1-E3). The relative populations of these elongated structures depend strongly on the solution composition. Activation of compact ions from aqueous solutions known to favor N-state ubiquitin produces mostly the E1 type elongated state, whereas activation of compact ions from methanol containing solutions that populate A-state ubiquitin favors the E3 elongated state. Presumably, this difference arises because of differences in precursor ion structures emerging from solution. Thus, it appears that information about solution populations can be retained after ionization, selection, and activation to produce the elongated states. These data as well as others are discussed. Figure

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Determination of oxidation states of uranium and plutonium in cooling solution of spent fuel element assemblies from NPP A-1

The knowledge of oxidation states of uranium and plutonium is necessary from the point of view of the proposed vitrification technology for the final liquidation of the cooling solution as a high radioactive waste containing alpha activity. The valence states of uranium and plutonium have a major influence on the subsequent leaching rate of these elements from vitrification matrices. Using the various chemical behaviours of these elements, in accordance with their valence states, we made an attempt to establish their oxidation state in the original solution.     

Radiochemical investigation of the consequence of isomeric transition in telluric acid in solid and in solution

The chemical states of tellurium ground state isomers formed as a result of isomeric transition from the meta state isomers of tellurium-121, 127, 129 and 131 isotopes have been studied in solid telluric acid and solution. The fraction of tetra-valent tellurium obtained for the above isotopes differed from isotope to isotope and also from solid to solution. More tetra-valent form was found in solution than in solid. The observed results were interpreted in terms of the partial decay constant of the parent meta state isomers. Anion exchange chromatography was applied to separate the tetra-valent and hexa-valent forms of tellurium.     

Studies on the photooxidation mechanism of polymers. II. The role of quinones as sensitizers in the photooxidative degradation of polystyrene

During the quinone-sensitized photooxidative degradation of polystyrene film and its solution in benzene, an initial rapid decrease of average molecular weight has been observed by GPC and viscosity measurements. The reaction rates are strongly increased by quinones such as p-quinone, duroquinone, anthraquinone, and chloranil. It has been suggested that this photosensitized degradation of polystyrene occurs by a singlet oxygen reaction which might be related to an energy transfer mechanism from excited triplet states of quinones to molecular oxygen. The photooxidative degradation of polystyrene in solution can be diminished by addition of typical singlet oxygen quenchers such as 1,3-cyclohexadiene or β-carotene.     

On the electronically excited states of uracil

Vertical excitation energies in uracil in the gas phase and in water solution are investigated by the equation-of-motion coupled-cluster and multireference configuration interaction methods. Basis set effects are found to be important for converged results. The analysis of electronic wave functions reveals that the lowest singlet states are predominantly of a singly excited character and are therefore well described by single-reference equation-of-motion methods augmented by a perturbative triples correction to account for dynamical correlation.Our best estimates for the vertical excitation energies for the lowest singlet n --> pi* and pi --> pi* are 5.0 +/- 0.1 eV and 5.3 +/- 0.1 eV, respectively. The solvent effects for these states are estimated to be +0.5 eV and +/- 0.1 eV, respectively. We attribute the difference between the computed vertical excitations and the maximum of the experimental absorption to strong vibronic interaction between the lowest A" and A' states leading to intensity borrowing by the forbidden transition.     

The appearance of reorganization of intramolecular low-frequency modes in the kinetics of electron transfer from the second excited state in zinc-porphyrin derivatives

An analysis of theoretical modeling results of ultrafast kinetics of photoinduced intramolecular charge separation from the second excited singlet state in the dyad Zn-tetraphenylporphyrin-aminonaphthalenediimide (Zn-TPP-ANDI) in a solution of toluene is presented. The calculations are performed within the framework of the stochastic multi-channel model, which includes four electron states (the ground, first and second excited singlet states, the state with charge separation), as well as their vibration sublevels corresponding to the excitation of highfrequency intramolecular vibration modes. A bimodal kinetic curve of population of the state with charge separation observed in experiments is quantitatively reproduced. The absolute yield values of the state with charge separation are determined. The results of the modeling show that intramolecular modes make a significant contribution to the reorganization of low-frequency modes. Quantum chemical calculations were performed, determining the degrees of freedom related to the intramolecular slow motion of nuclei of high amplitude in the dyad Zn-TPPANDI on going from the ground state to the state with charge separation.     

The numerical modeling of the composition and state of aggregation of the condensed medium formed in heating the Bi2O3 oxide in argon

The paper presents the results of the thermodynamic modeling of the composition and state of aggregation of the condensed medium formed in a Bi₂O₃-Ar medium at 9.8066 × 10^?2 MPa over the temperature range 300–1300 K. The possible presence of the Bi₂O₃, BiO, Bi₂O₅, and BiO₂ oxides in the solid and liquid states was taken into account. Temperature-induced changes in the solid and liquid solution components (bismuth oxides in various states of aggregation) are discussed.