Fragmentation of even electron ions: Protonated amines and esters

The fragmentation of protonated amines and esters is examined by collision induced dissociation of mass selected ions generated by chemical ionization. Four fragmentation types are observed: (i) loss of an alkane moiety, explicable in terms of a four-centered reaction, (ii) loss of alkene, also explicable as a four-centered process, (iii) loss of an alkyl radical, requiring electron unpairing, (iv) losses of other neutral molecules, viz. acids and alcohols from protonated esters, or amines and ammonia from protonated amines. Proposed mechanisms were checked by characterizing selected product ions through their collision induced dissociation spectra. The usefulness of these generalizations is substantiated by the successful prediction of the fragmentation patterns and the order of relative abundances of daughter ions for eight unknowns including some containing functional groups not studied previously.     

Use of metastable peak shapes in determining ring size in cyclic rearrangements in the mass spectrometer

A general method is described in which the mechanism of a reaction occurring in the ion source is inferred from the kinetic energy release accompanying further fragmentation of metastable product ions. In several cases the probe reaction occurred competitively by two mechanisms, and if high energy resolution is available this allows the detailed metastable peak shapes and not merely the average kinetic energy released, to be used to characterize the product ion formed in the fast (ion source) reaction. It is found that most substituted benzaldoxime O-methyl ethers undergo HCN elimination via a five-centered methoxyl transfer in the ion source, but that the p-methoxy substituted compound reacts through both a four- and a five-membered cyclic intermediate. The slow reactions of the corresponding metastable ions occur predominantly through a four-centered transition state in the p-methoxy compound and probably through both four- and five-membered intermediates for the less strongly electron donating substituents. The fraction of the excess energy of the products is higher than expected from a consideration of energy partitioning data for other systems involving activated complexes of comparable tightness.     

Ab initio study of the S(N)2 and E2 mechanisms in the reaction between the cyanide ion and ethyl chloride in dimethyl sulfoxide solution

[reaction: see text] Reliable theoretical calculations predict a free energy barrier for nitrile formation from the reaction between the cyanide ion and ethyl chloride in DMSO solvent of 24.1 kcal/mol, close to the experimental value of 22.6 kcal/mol. We have also predicted that the isonitrile formation is less favorable by 4.7 kcal/mol, while the elimination mechanism is less favorable by more than 10 kcal/mol. These results indicate that isonitrile formation and bimolecular elimination are not significant side reactions for primary alkyl chloride reactions.     

The sequential dissociation of protonated polyethylene glycols

Early investigations of protonated polyethylene glycol fragmentation suggested the dissociation mechanism includes both direct and sequential processes. Experiments designed to study the proposed mechanisms of sequential dissociation are absent from the literature. In order to obtain additional experimental details about the fragmentation reactions, the dissociation of protonated polyethylene glycol was studied by energy‐dependent collision‐induced dissociation (CID). Key fragment ions were separated by mass differences corresponding to the loss of single monomer units. Several fragment ions were also generated by in‐source fragmentation and studied by CID. These experiments indicate the primary ions undergo sequential dissociation by the loss of either one or two monomer units. The results suggest that at least two different mechanisms must be considered to explain the sequential dissociation of protonated polyethylene glycols. The reaction involving the elimination of two subunits suggests the loss of a six‐membered 1,4‐dioxane product, while the elimination of a single subunit involves the loss of acetaldehyde by a 1,2‐hydride shift rearrangement. Copyright © 2013 John Wiley & Sons, Ltd.     

Hydrogen migrations in mass spectrometry. VI—the chemical ionization mass spectra of substituted benzoic acids and benzyl alcohols

The H₂ and CH₄ chemical ionization mass spectra of a series of series of substituted benzoic acids and substituted benzyl alcohols have been determined. For the benzoic acids the major fragmentation reactions of the protonated molecule involve elimination of H₂O or elimination of CO₂, the latter reaction involving migration of the carboxylic hydrogen to the aromatic ring. For the benzyl alcohols the major fragmentation reactions of [MH]⁺ involve loss of H₂O or CH₂O, analogous to the CO₂ elimination reaction for the benzoic acids. It is shown that the CO₂ and CH₂O elimination reactions occur only when a conjugated aromatic ring system is present, and that for the carboxylic acid systems, methyl groups and, to a lesser extent, phenyl groups are capable of migrating. The only discernible effect of substituents on the fragmentation of [MH]⁺ is an enhancement of the H₂O loss reaction in the benzoic acid system when an amino, hydroxyl, or halogen substituent is ortho to the carboxyl function. This ‘ortho’ effect, which differs in scope from that observed in electron impact mass spectra, is attributed to an intramolecular catalysis by the ortho substituent of the 1,3 hydrogen migration in the carbonyl protonated acid followed by H₂O elimination. Apparently, this route is favoured over the direct elimination of H₂O from the carbonyl protonated acid, since the latter has a high activation energy barrier because of unfavourable orbital symmetry restrictions.     

Einfluss funktioneller Gruppen auf die Massenspektren von 17β-Hydroxysteroiden

The different influence of functional groups on fragmentation reactions is demonstrated by the example of 17β-hydroxy-5α-androstanes. In 17β-hydroxy-5α-androstane the tendency of steroids to be cleaved by rupture of the C-13/C-17 bond under production of a charged centre at C-13 is only enhanced by the hydroxyl group. This influence of the hydroxyl group only predominates as long as substituents are absent which need less energy for ionization than is necessary to ionize the C-13/C-17 bond. Even the presence of a double bond may change the fragmentation pattern completely. If, however, an additional alkyl group is located at C-17, ionization occurs with high probability by elimination of an electron from the OH group connected to C-17. Therefore, other main degradation reactions occur than in molecular ions, having the charge located at C-13. In such compounds even the dominant influence of a conjugated system on the fragmentation reactions is considerably reduced. By etherfication of the hydroxyl group this effect is still very much increased. In the course of this investigation some not yet known degradation reactions, rather typical for the presence of certain groups in the steroid skeleton, were found. These are discussed briefly.     

Computational study of the aminolysis of 2-benzoxazolinone

Three possible mechanisms (zwitterionic, neutral stepwise, and neutral concerted) of the ring-opening reaction of 2-benzoxazolinone (BO) upon aminolysis with methylamine were studied at the B3LYP/6-31G* level. In the gas phase, the neutral concerted mechanism is shown to be most favorable, which proceeds via a rate-determining barrier of 28-29 kcal/mol. The transition state, CTS, associated with this barrier is a four-centered one, where 1,2-addition of the N[bond]H of methylamine to the C[bond]O of BO ring occurs. The rate-determining barrier of the neutral stepwise pathway is found to be ca. 42 kcal/mol. The inclusion of solvent effects by a polarizable continuum model (PCM) does not change the conclusions based on the gas-phase study; the barrier at CTS is reduced to 20, 20, and 22 kcal/mol in water, ethanol, and acetonitrile, respectively.     

Amide bond cleavage in deprotonated tripeptides: a newly discovered pathway to "b2 ions

The fragmentation reactions of the [M-H](-) ions of the tripeptides H-Gly-Leu-Sar-OH, H-Leu-Gly-Pro-OH and H-Gly-Leu-Gly-OH have been investigated in detail using energy-resolved mass spectrometry, isotopic labelling and MS(3) experiments. It is shown that the major route to the "b(2) ions involves loss of a neutral amine from the a(3) ([M-H-CO(2)](-)) ion rather than being formed directly by fragmentation of the [M-H](-) ion. When there is no C-terminal amidic hydrogen (Sar, Pro), loss of a neutral amine is the dominant primary fragmentation reaction of the a(3) ion. However, when there is a C-terminal amidic hydrogen (Gly), elimination of the N-terminal amino acid residue is the major fragmentation reaction of the a(3) ion and formation of the "b(2) ion is greatly reduced in importance. It is proposed that the "b(2) ions are deprotonated oxazolones.     

Re-examination of the anion derivatives of isoflavones by radical fragmentation in negative electrospray ionization tandem mass spectrometry: experimental and computational studies

This paper reports theoretical and experimental studies of gas‐phase fragmentation reactions of four naturally occurring isoflavones. The samples were analyzed in negative ion mode by direct infusion in ESI‐QqQ, ESI‐QqTOF and ESI‐Orbitrap systems. The MS/MS and MSⁿ spectra are in agreement with the fragmentation proposals and high‐resolution analyses have confirmed the formulae for each ion observed. As expected, compounds with methoxyl aromatic substitution have showed a radical elimination of ?CH₃ as the main fragmentation pathway. A second radical loss (?H) occurs as previously observed for compounds which exhibit a previous homolytic ?CH₃ cleavage (radical anion) and involves radical resonance to stabilize the anion formed. However, in this study we suggest another mechanism for the formation of the main ions, on the basis of the enthalpies for each species. Compounds without methoxy substituent dissociate at the highest energies and exhibit the deprotonated molecule as the most intense ion. Finally, energy‐resolved experiments were carried out to give more details about the gas‐phase dissociation reaction of the isoflavones and the results are in agreement with the theoretical approaches. Copyright © 2011 John Wiley & Sons, Ltd.     

Fragmentation reactions of the enolate ions of 2-pentanone

The reaction of [OH]^? with 2-pentanone produces two enolate ions, [CH₃CH₂CH₂COCH₂]^? and [CH₃COCHCH₂CH₃]^?, by proton abstraction from C(1) and C(3), respectively. Using deuterium isotopic labelling the fragmentation reactions of each enolate have been delineated for collisional activation at both high (8 keV) and low (5–100 eV) collisional energies. The primary enolate ion fragments mainly by elimination of ethene. Two mechanisms operate: elimination of C(4) and C(5) with hydrogen migration from C(5), and elimination of C(3) and C(4) with migration of the C(5) methyl group. Minor fragmentation of the primary enolate also occurs by elimination of propane and elimination of C₂H₅; the latter reaction involves specifically the terminal ethyl group. The secondary enolate ion fragments mainly by loss of H₂ and by elimination of CH₄; for the latter reaction four different pathways are operative. Minor elimination of ethene also is observed involving migration of a C(5) hydrogen to C(3) and elimination of C(4) and C(5) as ethene.     

N-二异丙基磷酰基氨基酸的电子电离和快原子轰击质谱的比较

N-二异丙基磷酰基(DIPP)氨基酸的快原子轰击(FAB)和电子电离(EI)质谱都有相似的丢失两分子丙烯和一分子甲酸的碎裂过程.在FAB中,连续失掉两个丙烯,然后脱去甲酸的过程较为有利;在EI中则主要为先脱去甲酸,随后失去丙烯,本文对DIPP-氨基酸的FAB和EI质谱碎裂历程进行了比较,对分子离子峰的形式与碎裂方式的关系进行了讨论.     

Main fragmentation routes of functionally substituted cyclopropenes under electron impact

The behaviour of substituted cyclopropenes under electron impact is to a large extent determined by the presence of the unsaturated three-membered ring which is capable of efficient delocalization of the positive charge. The loss of one of the substituents at the C(3) position of the small ring is characteristic for the fragmentation of cyclopropenes; the loss of the substituent which is less electron donating occurs preferentially. The presence of substituents with heteroatoms on the three-membered ring may lead to changes in the fragmentation scheme characteristic for the specific set of substituents.     

Mechanism of benzene hydroxylation by high-valent bare Fe(IV)=O2+: explicit electronic structure analysis

The conversion of benzene to phenol by high-valent bare FeO(2+) was comprehensively explored using a density functional theory method. The conductor-like screen model (COSMO) was used to mimic the role of solvent effect with acetonitrile chosen as the solvent. Two radical mechanisms and one oxygen insertion mechanism were tested for this conversion. The first radical mechanism can also be named as the concerted mechanism in which the hydrogen-atom abstraction process is accomplished via a four-centered transition state. The second radical mechanism is initiated by a direct hydrogen-atom abstraction with a collinear C-H-O transition structure. It is actually the same as the well-accepted rebound mechanism for the C-H bond activation by heme and nonheme iron-oxo catalysts. The third is an oxygen insertion mechanism which is essentially an aromatic electrophilic attack leading to an arenium σ-complex intermediate. The formation of a precomplex with an η(4) coordinate environment in the first radical mechanism is energetically more favorable. However, the relatively lower activation energy barrier of the oxygen insertion mechanism compared to the radical ones makes it highly competitive if the Fe=O(2+) collides with benzene in the proper orientation. The detailed potential energy surfaces also indicate that the second radical mechanism, i.e., the benzene C-H bond activation through the rebound mechanism, is less favorable. This thorough theoretical study, especially the electronic structure analysis, may offer very important clues for understanding and studying C-H bond activation by iron-based catalysts and enzymatic reactions in protein active pockets.     

Activation of C-H / H-H bonds by rhodium(II) porphyrin bimetalloradicals

Reactivity, kinetic, and thermodynamic studies are reported for reactions of a rhodium(II) bimetalloradical with H(2), and with the methyl C-H bonds for a series of substrates CH(3)R (R = H, CH(3), OH, C(6)H(5)) using a m-xylyl diether tethered diporphyrin ligand. Bimolecular substrate reactions involving the intramolecular use of two metalloradical centers and preorganization of the four-centered transition state (M*...X...Y*...M) result in large rate enhancements as compared to termolecular reactions of monometalloradicals. Activation parameters and deuterium kinetic isotope effects for the substrate reactions are reported. The C-H bond reactions become less thermodynamically favorable as the substrate steric requirements increase, and the activation free energy (DeltaG++) decreases regularly as DeltaG degrees becomes more favorable. An absolute Rh-H bond dissociation enthalpy of 61.1 +/- 0.4 kcal mol(-1) is directly determined, and the derived Rh-CH(2)R BDE values increase regularly with the increase in the C-H BDE.     

Comparison of collision-induced dissociation and electron-induced dissociation of <Emphasis Type="Italic">singly protonated</Emphasis> aromatic amino acids,cystine and related simple peptides using a hybrid linear ion trap–FT-ICR mass spectrometer

The gas-phase fragmentation reactions of singly protonated aromatic amino acids, their simple peptides as well as simple models for intermolecular disulfide bonds have been examined using a commercially available hybrid linear ion trap-Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometer. Low-energy collision-induced dissociation (CID) reactions within the linear ion trap are compared with electron-induced dissociation (EID) reactions within the FT-ICR cell. Dramatic differences are observed between low-energy CID (which occurs via vibrational excitation) and EID. For example, the aromatic amino acids mainly fragment via competitive losses of NH(3) and (H(2)O+CO) under CID conditions, while side-chain benzyl cations are major fragment ions under EID conditions. EID also appears to be superior in cleaving the S-S and S-C bonds of models of peptides containing an intermolecular disulfide bond. Systematic studies involving fragmentation as a function of electron energy reveal that the fragmentation efficiency for EID occurs at high electron energy (more than 10 eV) compared with the low-electron energy (less than 0.2 eV) typically observed for electron capture dissociation fragmentation. Finally, owing to similarities between the types of fragment ions observed under EID conditions and those previously reported in ultraviolet photodissociation experiments and the electron-ionization mass spectra, we propose that EID results in fragmentation via electronic excitation and vibrational excitation. EID may find applications in analyzing singly charged molecular ions formed by matrix-assisted laser desorption ionization.     

Mass spectra of partially fluorinated β-diketonato complexes of Al(III), Cr(III), Fe(III) and Co(III)

The mass spectra of the Al(III), Cr(III), Fe(III) and Co(III) complexes of the anions of hexafluoroacetylacetone (hfac) trifluoroacetylacetone (ttac), benzoyltrifluoroacetone (btac) and thenoyltrifluoroacetone (ttac) have been determined and are discussed here. Emphasis is placed on discerning which of the observed reactions may properly be attributed to the influence of the metal in the complex and those which may be thought of as arising from the nature of the ligand. The most important influence of the coordinated metal is related to its ability to be reduced²; however, the presence of the metal serves to prohibit or facilitate certain rearrangement reactions relative to the free protonated ligand. Since essentially all fragmentation occurs within or by loss of a ligand, the nature of the ligand determines the nature of the observed fragments. Where intramolecular com-petition of fragment types is possible (tfac, btac and ttac complexes), the most probable fragment of a given class, odd electron or even electron, is easily determined. The most commonly eliminated fragments are CF₃and CF₂. Certain metastable peaks are associated with consecutive decomposition in the field free region. Such a phenomenon appears to be common for molecules of the type studied here.     

Nb+离子活化甲烷脱氢反应机理密度泛函(DFT)研究

通过DFT-UB3LYP方法, 计算了五重、三重和单重自旋态下的气相Nb+离子活化甲烷脱氢反应的能量变化, 并对其直接式和插入式反应机理进行了比较, 考察了自旋翻转对反应的影响. 结果表明, 插入式脱氢较直接式有利, CH4上的H转移到Nb+上形成的中间体HNbCH+3中, 多重度由五重降为三重, 反应活化能垒显著降低; HNbCH+3可经四中心过渡态转化为(H2)NbCH+2, 最后生成三重态的NbCH+2+H2. 速控步骤为(H2)NbCH+2的脱氢. 此外, 通过对V+, Nb+, Ta+活化甲烷的比较研究了三者活化甲烷的反应活性.     

Fragmentation reactions of singly and doubly protonated thiourea- and sugar-substituted cyclams and their transition-metal complexes

Cyclam macrocycles tetrasubstituted with amino-, thiourea-, and sugar-terminated side chains are ionized by electrospray ionization mass spectrometry (ESI-MS) as singly or doubly protonated species or as transition-metal complexes. Their fragmentation behavior is examined in a Fourier-transform ion-cyclotron-resonance (FT-ICR) mass spectrometer by collision-induced dissociation (CID) experiments. Typically, fragmentation occurs within the side chains through a number of different 1,2-elimination reactions irrespective of the absence or presence of a transition metal ion such as Co(2+), Ni(2+), or Zn(2+). A remarkable exception is Cu(2+), which induces ring cleavage reactions. This is traced back to an electron transfer from the cyclam nitrogen atoms to the Cu(2+) ion. The electron transfer creates a cation-radical within the macrocycle, which induces typical fragmentation reactions such as alpha-cleavages that lead to fragmentation within the macrocycle. This interpretation is in line with fragmentation experiments on unsubstituted cyclam and its complexes.     

On the Mechanism of the Reaction of alpha-Substituted Ketones with Allyltributylstannane

The mechanisms for the reaction of allyltributylstannane with a number of fragmentation probes, alpha-substituted acetophenones, were studied. All reactions were shown to proceed through free radical chain sequences since they could be initiated by AIBN and inhibited by m-dinitrobenzene (DNB). alpha-Halo- and alpha-(benzoyloxy)acetophenones (I and II, PhCOCR(1)R(2)X; X = F, Cl, Br, OCOPh; R(1), R(2) = H, Me) yielded the allylation products, PhCOCR(1)R(2)CH(2)CH=CH(2)), through a chain sequence involving as the propagation step: an electron transfer from Bu(3)Sn(*) to I and II, fragmentation of the ketyl anion PhCOCR(1)R(2)X(*)(-), and addition of PhCOCR(1)R(2)(*) to allyltributylstannane. The reactions of alpha-(arylsulfonyl)acetophenones (IIIa-c, PhCOCR(1)R(2)Y, Y = SO(2)Tol-p), however, gave a nearly 1:1 mixture of allyl tosyl sulfone and the corresponding ketone, PhCOCHR(1)R(2). The (1)H and (13)C NMR of the reaction mixture between allyltributylstannane and alpha-(p-methylbenzenesulfonyl)isobutyrophenone substantiated the intermediacy of the tin enolate PhC(OSnBu(3))=CMe(2). These results suggested that a radical addition elimination mechanism was involved in the reactions of IIIa-c with allylstannane. The reaction of alpha-phenylthioacetophenone (IV, PhCOCH(2)SPh) gave both the electron transfer and the addition elimination products (PhCOCH(2)CH(2)CH=CH(2), PhCOCH(3)), indicating that both pathways were involved in the formation of the products.     

Mechanisms for the dehydrogenation of alkanes on platinum: insights gained from the reactivity of gaseous cluster cations, Ptn + n=1-21

Rates for the dihydrogen elimination of methane, ethane, and propane with cationic platinum clusters, Pt(n) (+) (1相似文献