Natural abundance nitrogen-15 NMR by enhanced heteronuclear spectroscopy

The detection of NMR spectra of less sensitive nuclei coupled to protons may be significantly unproved by a two-dimensional Fourier transform technique involving a double transfer of polarization. The method is adequate to obtain natural abundance ¹⁵N spectra in small sample volumes with a commercial spectrometer     

Aromatic solvent-induced shifts (ASIS) in carbon-13 NMR spectroscopy

A new method is proposed for the estimation of aromatic solvent-induced shifts (ASIS) in carbon-13 NMR spectroscopy. The observed C-13 ASIS are shown to be useful for studing the structure elucidation.     

Carbon-13, nitrogen-15 and oxygen-17 NMR chemical shifts of substituted 1-phenyl-2-pyrrolidinones

The carbon-13 and nitrogen-15 NMR chemical shifts and the direct carbon—proton coupling constants of 1-phenyl-2-pyrrolidinone and its 2′-methyl, 3′-methyl, 4′-methyl, 2′-chloro, 3′-chloro, 4′-chloro, 3′-methoxy, 4′-methoxy and 4′-nitro derivatives were measured in dimethyl sulfoxide. The oxygen-17 NMR chemical shifts of some of the compounds were determined in acetone.The effect of substituents on the chemical shifts of carbonyl carbons correlates well with the Hammett substituent parameters and the nitrogen chemical shifts seem to follow a similar trend. The variation of the oxygen chemical shift due to the substituents is small. The chemical shifts of aromatic carbons can mainly be derived using the substituent parameters of benzene; some deviation probably due to steric effects is observable, however.     

13C/15N distance determination by CPMAS NMR in uniformly 13C labeled molecules

The REDOR and CPMAS techniques are applied for measuring 13C-15N dipolar coupling constants in glycine. It is shown that the selective CP or SPECIFIC CP technique removes the coherent evolution of the spin system under homonuclear 13C-13C J couplings. While the large coupling constant (approximately 900 Hz) is readily determined because of the presence of large oscillations in the CPMAS dynamics, their absence precludes the measurement of the small coupling constant (approximately 200 Hz). The experimental results and numerical simulations demonstrate that the determination of 13C-15N coupling constants of medium size (<1 kHz) by the CPMAS technique is mainly limited by the strength of the 1H decoupling field and the size of the 13C and 15N chemical shift anisotropies.     

Backbone dynamics of proteins studied by two-dimensional heteronuclear NMR spectroscopy and molecular dynamics simulations

To investigate the backbone dynamics of proteins ¹⁵N longitudinal and transverse relaxation experiments combined with {¹H, ¹⁵N{ NOE measurements together with molecular dynamics simulations were carried out using ribonuclease T₁ and the complex of ribonuclease T₁ with 2′GMP as a model protein. The intensity decay of individual amide cross peaks in a series of (¹H, ¹⁵N)HSQC spectra with appropriate relaxation periods was fitted to a single exponential by using a simplex algorithm in order to obtain ¹⁵N T₁ and T₂ relaxation times. The relaxation times were analyzed in terms of the “model-free” approach introduced by Lipari and Szabo. In addition, a nanosecond molecular dynamics (MD ) simulation of ribonuclease T₁ and its 2′GMP complex in water was carried out. The angular reorientations of the backbone amide groups were classified with several coordinate frames following a transformation of NH vector trajectories. In this study, NH librations and backbone dihedral angle fluctuations were distinguished. The NH bond librations were found to be similar for all amides as characterized by correlation times of librational motions in a subpicosecond scale. The angular amplitudes of these motions were found to be about 10°–12° for out-of-plane displacements and 3°–5° for the in-plane displacement. The contributions from the much slower backbone dihedral angle fluctuations strongly depend on the secondary structure. The dependence of the amplitude of local motion on the residue location in the backbone is in good agreement with the results of NMR relaxation measurements and the X-ray data. The protein dynamics is characterized by a highly restricted local motion of those parts of the backbone with defined secondary structure as well as by a high flexibility in loop regions. Comparison of the MD and NMR data of the free liganded enzyme ribonuclease T₁ clearly indicates a restriction of the mobility within certain regions of the backbone upon inhibitor binding. © 1996 John Wiley & Sons, Inc.     

Carbon-13 NMR spectra of a series of para-substituted N,N-dimethylbenzamides. Comparisons of linear free energy relationships for carbon-13 and nitrogen-15 chemical shifts and rotation barriers

All carbon-13 chemical shifts for 11 para-substituted N,N-dimethylbenzamides in 1 mole % chloroform solution are reported, with assignments based upon double resonance experiments, analogy to chemical shifts of benzamide, and self-consistency between experimental and calculated values using recognized substituent parameters. In contrast to earlier reports, the aryl carbon chemical shift assignments for N,N-dimethylbenzamide are C-2, 127.0; C-3, 128.7; C-4, 129.4, and for p-chloro-N,N-dimethylbenzamide are C-1, 134.6; C-4, 135.5 ppm, relative to internal TMS. Good Hammett correlations (σ_p) are reported for ¹³C chemical shifts of C-1 (σ = 11.9 ppm) and even for the carbonyl group (σ = ?2.3 ppm) but are markedly improved if correlated with σ_p+ (σ = 9.5 ppm) and Dewar's F (σ = ?1.9 ppm), respectively. Excellent Swain–Lupton F and R correlations were found for some of the ¹³C chemical shifts and yielded values for percent resonance contributions to transmission of substituent effects as follows, C-1, 75 ± 4%; C-2, 51 ± 3%; C?O, 31±2%. These are compared to similar values calculated from the C?O of benzoic acids of 34±10%, and from the nitrogen-15 chemical shifts of benzamides of 56±2%. Correlations of these ¹³C δ values and ¹⁵N δ values with rotation barriers (ΔG) for N,N-dimethylbenzamides were examined, and it was found that while C?O δ values correlated only poorly the C-1 δ values correlated very well, but the best correlation was for ¹⁵N δ values of benzamides. It is suggested that Δ G and δ ¹⁵N are intrinsically related due to their numerical correlation, and the close similarity in percent resonance contribution of substituent influence on these parameters.     

Topics in carbon-13 NMR spectroscopy

The salts [NMe₄]₂[Ni₅(CO)₁₂], [NMe₄]₂[Ni₆(CO)₁₂], [NMe₄]₂[Ni₁₂(CO)₂₁H₂] and [NEt₄]₃[Ni₁₂(CO)₂₁H] in acetone are efficient catalysts for the polymerisation of acetylene.     

13C and 15N NMR chemical shifts of alkylsubstituted benzonitriles

¹³C NMR data of 14 and ¹⁵N NMR data of four alkylsubstituted benzonitriles are reported and discussed in relation to substituent effects and stereochemistry.     

Site-specific 13C chemical shift anisotropy measurements in a uniformly 15N,13C-labeled microcrystalline protein by 3D magic-angle spinning NMR spectroscopy

In this Communication, we introduce a 3D magic-angle spinning recoupling experiment that correlates chemical shift anisotropy (CSA) powder line shapes with two dimensions of site-resolved isotropic chemical shifts. The principal tensor elements from 127 ROCSA line shapes are reported, constraining 102 unique backbone and side-chain 13C sites in a microcrystalline protein (the 56 residue beta1 immunoglobulin binding domain of protein G). The tensor elements, determined by fitting to numerical simulations, agree well with quantum chemical predictions. The experiments, therefore, validate calculations of CSAs in a protein of known structure. The data will be useful for the development of side-chain CSA quantum calculations and will aid in the design and interpretation of solution NMR experiments that utilize CSA-dipole cross-correlation to constrain torsion angles or to enhance resolution and sensitivity (such as in TROSY). Furthermore, the methodology described here will enable databases of CSA data to be generated with higher efficiency, for purposes of direct protein structure refinement.     

Assignment of proton NMR spectra and conformational analysis by two-dimensional heteronuclear relayed correlation NMR spectroscopy

The method of two-dimensional heteronuclear relayed correlation spectroscopy was used to establish the assignment of the severely overcrowded part of the proton spectrum of menthol by relating it to the previously assigned carbon spectrum. Extrapolation of the signal-to-noise ratio obtained with overnight data accumulation on a 10 mM solution suggests that this experiment should be feasible on as little as 10 mg of a moderate-sized organic compound.     

Direct hydrogen-1, carbon-13, and nitrogen-15 NMR study of magnesium(II)-isothiocyanate complexing

A hydrogen-1, carbon-13, and nitrogen-15 NMR study of magnesium(II)-isothiocyanate complexation in aqueous mixtures has been completed. At temperatures low enough to slow proton and ligand exchange, separate¹H,¹³C, and¹⁵N NMR signals are observed for coordinated and bulk water molecules and anions. The¹H NMR spectra reveal signals for the hexahydrate and the mono-through triisothiocyanato complexes, as well as two small signals attributed to [Mg(H₂O)₅(OH)]¹⁺ and [Mg(H₂O)₄(OH)(NCS)]. Accurate hydration numbers were obtained from signal area integrations at each NCS^– concentration. In the¹⁵N NMR spectra, signals also were observed for the mono-through triisothiocyanato complexes, and a small signal believed to be due to [Mg(H₂O)₄(OH)(NCS)]. Coordination number contributions for NCS^– were measured from these spectra and when combined with the hydration numbers they totalled essentially six at each anion concentration. Signals for [Mg(H₂O)₅(NCS)]¹⁺ through [Mg(H₂O)₃(NCS)₃]^1– also were observed in the¹³C NMR spectra and the area evaluations were comparable to the¹⁵N NMR results. An analysis of the magnitude and sign of the coordinated NCS^– chemical shifts identified the nitrogen atom as the anion binding site. All spectra indicated [Mg(H₂O)₅(NCS)]¹⁺ and [Mg(H₂O)₄(NCS)₂] were the dominat isothiocyanato complexes over the entire range of anion concentrations. The inability to detect evidence for complexes higher than the triisothiocyanato reflects the competitive binding ability of water molecules and perhaps the decreased electrostatic interaction between NCS^– and negatively charged higher complexes.     

Composition as a method for data reduction: application to carbon-13 NMR chemical shifts

The concept of composition as the counterpart to partition is introduced and advocated for the discussion of molecular properties. In the partition approach an observable (experimental) quantity is fragmented into contributions which are non-observable but which hopefully maintain constancy for fragments (bonds) in similar environments and thus facilitate comparison of data. With the composition as an approach the role of fragments and whole are reversed: one starts with a collection of observable fragment properties (e.g., atomic chemical shifts of NMR spectra) and then constructs an abstract non-observable quantity representing the collection of fragments as a whole. If a so-derived quantity for different molecules shows some regularity, the initial loss of information in condensation of independent fragment data is compensated by insight into novel structural correlations. The approach is illustrated first by ordering isomers (e.g., nonanes C₉H₂₀) with respect to their content of special graph invariants p ₂ and p ₃ (numbers of paths of length two and length three, respectively) and then showing that the constructed global quantity derived from individual carbon-13 NMR chemical shifts shows a regular variation with p ₂ and p ₃, very similar to isomeric variations of numerous thermodynamic properties of nonanes. Subsequently it is outlined how the difference (p ₂ p ₃) leads to a correlation for mean carbon-13 chemical shifts in octanes and nonanes, taken as an illustration for the approach. It is expected that the outlined approach opens new avenues for data reduction and the search for structure-property correlations.Dedicated to Professor J. Koutecký on the occasion of his 65th birthdayOperated by Iowa State University for the US Department of Energy under Contract No. W-7405-ENG-82. This work was supported in part by the Office of the Director     

Proton to carbon-13 INEPT in solid-state NMR spectroscopy

A refocused INEPT through-bond coherence transfer technique is demonstrated for NMR of rigid organic solids and is shown to provide a valuable building block for the development of NMR correlation experiments in biological solids. The use of efficient proton homonuclear dipolar decoupling in combination with a direct spectral optimization procedure provides minimization of the transverse dephasing of coherences and leads to very efficient through-bond (1)H-(13)C INEPT transfer for crystalline organic compounds. Application of this technique to 2D heteronuclear correlation spectroscopy leads to up to a factor of 3 increase in sensitivity for a carbon-13 enriched sample in comparison to standard through-bond experiments and provides excellent selectivity for one-bond transfer. The method is demonstrated on a microcrystalline sample of the protein Crh (2 x 10.4 kDa).     

Conformations and 13C NMR chemical shifts of some polyamides in the solid state as studied by high-resolution 13C NMR spectroscopy

High-resolution ¹³Carbon nuclear magnetic resonance (NMR) spectra of Nylons 4, 6, and 66 in the solid state were measured over a wide range of temperature. From the results, it was found that resonance lines of crystalline and noncrystalline components were separable and their chemical shifts were determined. The ¹³C chemical shift behavior is closely related to their conformation. The origin of the conformational effects on the chemical shifts is discussed.