Quantum chemistry aspects of the solvent effects on the ene reaction of 1‐Phenyl‐1,3,4‐triazolin‐2,5‐dione and 2‐methyl‐2‐butene

A density functional theory study was used to investigate the quantum aspects of the solvent effects on the kinetic and mechanism of the ene reaction of 1‐phenyl‐1,3,4‐triazolin‐2,5‐dione and 2‐methyl‐2‐butene. Using the B3LYP/6–311++ G(d,p) level of the theory, reaction rates have been calculated in the various solvents and good agreement with the experimental data has been obtained. Natural bond orbital analysis has been applied to calculate the stabilization energy of N18? H19 bond during the reaction. Topological analysis of quantum theory of atom in molecule (QTAIM) studies for the electron charge density in the bond critical point (BCP) of N18? H19 bond of the transition states (TSs) in different solvents shows a linear correlation with the interaction energy. It is also seen form the QTAIM analysis that increase in the electron density in the BCP of N18? H19, raises the corresponding vibrational frequency. Average calculated ratio of 0.37 for kinetic energy density to local potential energy density at the BCPs as functions of N18? H19 bond length in different media confirmed covalent nature of this bond. Using the concepts of the global electrophilicity index, chemical hardness and electronic chemical potentials, some correlations with the rate constants and interaction energy have been established. Mechanism and kinetic studies on 1‐phenyl‐1,3,4‐triazolin‐2,5‐dione and 2‐methyl‐2‐butene ene reaction suggests that the reaction rate will boost with interaction energy enhancement. Interaction energy of the TS depends on the solvent nature and is directly related to electron density of the bonds involved in the reaction proceeding, global electrophilicity index and electronic chemical potential. However, the chemical hardness relationship is reversed. Finally, an interesting and direct correlation between the imaginary vibrational frequency of the N18? H19 critical bond and its electron density at the TS has been obtained. © 2014 Wiley Periodicals, Inc.     

DFT study of nitroxide radicals: explicit modeling of solvent effects on the structural and electronic characteristics of 4‐amino‐2,2,6,6‐tetramethyl‐piperidine‐N‐oxyl

An explicit DFT modeling of water surroundings on the electron paramagnetic resonance properties of 4‐amino‐2,2,6,6‐tetramethyl‐piperidine‐N‐oxyl (TA) has been performed. A stepwise hydration of TA is accompanied with certain changes in geometrical parameters (bond lengths and angles) and redistribution of partial electric charges in TA. An aqueous cluster of 45 water molecules can be considered as an appropriate model for a complete aqueous shell around TA, although most of the structural and electronic characteristics of TA already converge at about 10 water molecules. Water surroundings induce an increase in electron spin density on the nitrogen atom of the nitroxide fragment due to stabilization of the polar resonance structure > N^+?? O^? at the expense of less polar structure > N? O^?. The water‐induced rise of the isotropic splitting constant a_iso, calculated from the contact term of the hyperfine interaction, comprises Δa_iso(ρ_N2) = 2.2–2.5 G, which is typical of experimental value for TA. There are two contributions to the solvent effect on the a_iso(ρ_N2) value: the redistribution of spin density in the nitroxide fragment (polarity effect) and water‐induced distortions of TA geometry. Microscopic variations in a hydrogen‐bonded water network cause noticeable fluctuations of the splitting constant a_iso(ρ_N2). Calculations of the atomic spin density (σ_N2) allowed us to compute the splitting constant from the relationship a_iso(σ_N2) = Qσ_N2, where Q = 36.2 G. A practical advantage of using this relationship is that it gives ‘smoothed’ values of the splitting constant, which are sensitive to the environment polarity but remain tolerant to microscopic fluctuations of the hydrogen‐bonded water network around a spin‐label molecule. Copyright © 2010 John Wiley & Sons, Ltd.     

Synthesis and Spectral Properties of 4‐(2,5‐Dimethoxyphenylmethelene)‐2‐phenyl‐5‐oxazolone (DMPO)

An interesting flourophore, 4‐(2,5‐dimethoxyphenylmethelene)‐2‐phenyl‐5‐oxazolone (DMPO) was synthesized by mixing an equivalent molar quantity of hippuric acid and 2,5‐dimethoxybenzaldehyde in acetic anhydride in the presence of anhydrous sodium acetate. The absorption and fluorescence characteristics of 4‐(2,5‐dimethoxy‐phenylmethelene)‐2‐phenyl‐5‐oxazolone (DMPO) were investigated in different solvents. DMPO dye exhibits red shift in both absorption and emission spectra as solvent polarity increases, indicating change in the dipole moment of molecules upon excitation due to an intramolecular charge transfer interaction. The fluorescence quantum yield depends strongly on the properties of the solvents, which was attributed to positive and negative solvatokinetic effects. A crystalline solid of DMPO gave strong excimer like emission at 630 nm due to the excitation of molecular aggregates. This is expected from the idealized crystal structure of the dye that belongs to the B‐type class of Steven's Classification. DMPO displayed fluorescence quenching by triethylamine via nonemissive exciplex formation.     

Solvent models for protein–ligand binding: Comparison of implicit solvent poisson and surface generalized born models with explicit solvent simulations

Solvent effects play a crucial role in mediating the interactions between proteins and their ligands. Implicit solvent models offer some advantages for modeling these interactions, but they have not been parameterized on such complex problems, and therefore, it is not clear how reliable they are. We have studied the binding of an octapeptide ligand to the murine MHC class I protein using both explicit solvent and implicit solvent models. The solvation free energy calculations are more than 10³ faster using the Surface Generalized Born implicit solvent model compared to FEP simulations with explicit solvent. For some of the electrostatic calculations needed to estimate the binding free energy, there is near quantitative agreement between the explicit and implicit solvent model results; overall, the qualitative trends in the binding predicted by the explicit solvent FEP simulations are reproduced by the implicit solvent model. With an appropriate choice of reference system based on the binding of the discharged ligand, electrostatic interactions are found to enhance the binding affinity because the favorable Coulomb interaction energy between the ligand and protein more than compensates for the unfavorable free energy cost of partially desolvating the ligand upon binding. Some of the effects of protein flexibility and thermal motions on charging the peptide in the solvated complex are also considered. © 2001 John Wiley & Sons, Inc. J Comput Chem 22: 591–607, 2001     

Morphology control of poly(3‐hexylthiophene)‐b‐poly(ethylene oxide) block copolymer by solvent blending

The use of mixed solvents provided an effective way to control the self‐assembly behavior and photophysical properties of a conjugated rod–coil block copolymer, poly(3‐hexylthiophene)‐b‐poly(ethylene oxide) (P3HT‐b‐PEO). It was shown that the balance between the π–π stacking of the P3HT and microphase separation of the copolymer could be dynamically controlled and shifted by solvent blending. Depending on the mixed solvent ratio (i.e., chloroform/methanol, anisole/chloroform, or anisole/methanol), the copolymer chains experienced different kinetic pathways, yielding a series of nanostructures such as disordered wormlike pattern, densely packed nanofibrils, and isolated nanofibrils. With the varying solvent selectivity, the P3HT‐b‐PEO chains displayed a hybrid photophysical property depending on the competition between intrachain and interchain excitonic coupling, resulting in the transformation between J‐ and H‐aggregation. Overall, this work offered an effective way to demonstrate the correlation and transformation between π–π stacking of P3HT and microphase separation, and how the conformation of P3HT chains influenced the photophysical properties of the copolymer during solvent blending. © 2015 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2016 , 54, 544–551     

Time‐dependent density functional theory study on the absorption spectrum of Coumarin 102 and its hydrogen‐bonded complexes

The effect of both solvent polarity and hydrogen bonding (HB) on the electronic transition energy of Coumarin 102 (C102) has been examined using the time‐dependent density functional theory (TDDFT). Solvent effect on both geometry and electronic transition energy is evaluated using the polarizable continuum model (PCM). A linear relation of the absorption maximum of C102 with the solvent polarity function Δf is found using the TDDFT‐PCM method for all solvents except dimethyl sulfoxide. The solvent polarity and the type B HB between the carbonyl oxygen and solvent hydrogen atom make the absorption wavelength redshift, whereas the type A HB between the amino nitrogen atom and solvent hydrogen atom has an opposite effect on the absorption wavelength. The calculated absorption wavelengths of C102 with two type B HB between the carbonyl oxygen and solvent hydrogen atom are in excellent agreement with experimental measurements. The solvatochromism of C102 is analyzed in terms of the Kamlet–Taft equation and the parameters s and a are discussed. © 2010 Wiley Periodicals, Inc. J Comput Chem, 2011.     

Numerical Simulation of the Effect of Solvent Viscosity on the Motions of a β‐Peptide Heptamer

This report examines the effect of a decrease in solvent viscosity on the simulated folding behaviour of a β‐peptide heptamer in methanol. Simulations of the molecular dynamics of the heptamer H‐β³‐HVal‐β³‐HAla‐β³‐HLeu‐(S,S)‐β³‐HAla(αMe)‐β³‐HVal‐β³‐HAla‐β³‐HLeu‐OH in methanol, with an explicit representation of the methanol molecules, were performed for 80 ns at various solvent viscosities. The simulations indicate that at a solvent viscosity of one third of that of methanol, only the dynamic aspects of the folding process are altered, and that the rate of folding is increased. At a viscosity of one tenth of that of methanol, insufficient statistics are obtained within the 80 ns period. We suggest that 80 ns is an insufficient time to reach conformational equilibrium at very low viscosity because the dependence of the folding rate of a β‐peptide on solvent viscosity has two regimes; a result that was observed in another computational study for α‐peptides.     

Theoretical Study on Electron Transfer Matrix Element in Oxidation of α—Amino Carbon—Centered Radical by O2

As a successive work of our previous paper,^1the electron transfer matrix element(Vrp)in the oxidation of the simplified model molecule of α-amino carbon-centered radical by O2 has been investigated with ab initio calculation at the level of UHF/6-31 G**.Based on the optimized geometries of the reactgant and the ion-pair complex obtained previously,the reaction heat and the iuner reorganization energy have been obtained by constructing the potential energy curves of reactant and product states considering the solvent effect with the conductor-like screening model(COSMO).The solvent reorganization energy has been estimated using Lippert-Mataga relationship.The calculated results show that the value of Vrp is several times larger than that of RT,which means that the model reaction is an adiabatic one.Theoretical investigation indicates that the solvent effect on the direct electron transfer (ET) process of oxidation of α-amino carbon-centered radical by oxygen is remarkable.     

Stability of ion triplets in ionic liquid/lithium salt solutions: Insights from implicit and explicit solvent models and molecular dynamics simulations

Binding energies of ion triplets formed in ionic liquids by Li⁺ with two anions have been studied using quantum‐chemical calculations with implicit and explicit solvent supplemented by molecular dynamics (MD) simulations. Explicit solvent approach confirms variation of solute‐ionic liquid interactions at distances up to 2 nm, resulting from structure of solvation shells induced by electric field of the solute. Binding energies computed in explicit solvent and from the polarizable continuum model approach differ largely, even in sign, but relative values generally agree between these two models. Stabilities of ion triplets obtained in quantum‐chemical calculations for some systems disagree with MD results; the discrepancy is attributed to the difference between static optimized geometries used in quantum chemical modeling and dynamic structures of triplets in MD simulations. © 2015 Wiley Periodicals, Inc.     

Physical Properties of 8‐Substituted 5,7‐Dichloro‐2‐Styrylquinolines as Potential Light Emitting Materials

Derivatives of 5,7‐dichloro‐2‐styrylquinoline ( 1 ), modified at position 8 of quinoline moiety with a methyl ether ( 4 , DCSQM) or acetate ( 5 , DCSQA), were synthesized and investigated. Both compounds exhibited high thermal stability (Td > 320 °C). The UV‐vis absorption of DCSQM and DCSQA varied only slightly in different solvents, whereas the emission spectra showed pronounced red shifts with increasing solvent polarity, suggesting the intramolecular charge transfer character of the emission state. Compounds 4 and 5 can emit lights from blue to green color in different solvents. The solvent polarity dependent electronic transitions are attributed to efficient intramolecular charge transfer (ICT) processes, in which the HOMOs and LUMOs are localized on the styrene‐based ring and the quinoline‐based moiety, respectively. The quinoline‐based LUMO provides compelling evidence that the first reduction site occurs on the electron‐deficient quinoline moiety.     

DFT study on the role of methanol solvent in Morita–Baylis–Hillman reaction

B3LYP/6‐311++G** calculations have been carried out to study the role of methanol solvent in the trimethylamine‐catalyzed Morita‐Baylis‐Hillman reaction between acraldehyde and formaldehyde with CPCM solvent method and supramolecular model with one explicit CH₃OH solvent molecule, respectively. The optimized geometries and energies of the reactant complexes, intermediates, transition states, and products of the two reaction channels (corresponding to the scenarios of syn‐ and anti‐acraldehyde, respectively) were obtained, and the relative energy profiles were completed. The results reveal that CH₃OH solvent molecules can stabilize the zwitterionic intermediates and largely reduce the barrier of H transfer process by taking part in the formation of the transition state in this process. C? C bond formation step is the rate‐determining step of the whole reaction cycle. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2009     

A new set of atomic radii for accurate estimation of solvation free energy by Poisson–Boltzmann solvent model

The Poisson–Boltzmann implicit solvent (PB) is widely used to estimate the solvation free energies of biomolecules in molecular simulations. An optimized set of atomic radii (PB radii) is an important parameter for PB calculations, which determines the distribution of dielectric constants around the solute. We here present new PB radii for the AMBER protein force field to accurately reproduce the solvation free energies obtained from explicit solvent simulations. The presented PB radii were optimized using results from explicit solvent simulations of the large systems. In addition, we discriminated PB radii for N‐ and C‐terminal residues from those for nonterminal residues. The performances using our PB radii showed high accuracy for the estimation of solvation free energies at the level of the molecular fragment. The obtained PB radii are effective for the detailed analysis of the solvation effects of biomolecules. © 2014 The Authors Journal of Computational Chemistry Published by Wiley Periodicals, Inc.     

Effect of the π Bridge and Acceptor on Intramolecular Charge Transfer in Push–Pull Cationic Chromophores: An Ultrafast Spectroscopic and TD‐DFT Computational Study

Three (donor–π–acceptor)⁺ systems with a methyl pyridinium or quinolinium as the electron‐deficient group, a dimethyl amino as the electron‐donor group, and an ethylene or butadiene group as the spacer have been investigated in a joint spectroscopic and TD‐DFT computational study. A negative solvatochromism has been revealed in the absorption spectra, which implies a solution color change, and interpreted by considering the variation in the permanent dipole moment modulus and orientation upon photoexcitation. The fluorescence efficiency decreases upon increasing solvent polarity, in agreement with the excited‐state optimized geometries (planar in low‐polarity media and twisted in high‐polarity media). Femtosecond transient absorption has revealed the occurrence of a fast photoinduced intramolecular charge transfer (ICT) and the molecular factors that determine an efficient ICT. Considering the crucial role of the ICT in tuning the nonlinear optical (NLO) properties, these compounds can be considered promising NLO materials.     

A Theoretical Study of Ene Reactions in Solution: A Solution‐Phase Translational Entropy Model

Several density functional theory (DFT) methods, such as CAM‐B3LYP, M06, ωB97x, and ωB97xD, are used to characterize a range of ene reactions. The Gibbs free energy, activation enthalpy, and entropy are calculated with both the gas‐ and solution‐phase translational entropy; the results obtained from the solution‐phase translational entropies are quite close to the experimental measurements, whereas the gas‐phase translational entropies do not perform well. For ene reactions between the enophile propanedioic acid (2‐oxo‐1,3‐dimethyl ester) and π donors, the two‐solvent‐involved explicit+implicit model can be employed to obtain accurate activation entropies and free‐energy barriers, because the interaction between the carbonyl oxygen atom and the solvent in the transition state is strengthened with the formation of C?C and O?H bonds. In contrast, an implicit solvent model is adequate to calculate activation entropies and free‐energy barriers for the corresponding reactions of the enophile 4‐phenyl‐1,2,4‐triazoline‐3,5‐dione.     

Placevent: An algorithm for prediction of explicit solvent atom distribution—Application to HIV‐1 protease and F‐ATP synthase

We have created a simple algorithm for automatically predicting the explicit solvent atom distribution of biomolecules. The explicit distribution is coerced from the three‐dimensional (3D) continuous distribution resulting from a 3D reference interaction site model (3D‐RISM) calculation. This procedure predicts optimal location of solvent molecules and ions given a rigid biomolecular structure and the solvent composition. We show examples of predicting water molecules near the KNI‐272 bound form of HIV‐1 protease and predicting both sodium ions and water molecules near the rotor ring of F‐adenosine triphosphate (ATP) synthase. Our results give excellent agreement with experimental structure with an average prediction error of 0.39–0.65 Å. Further, unlike experimental methods, this method does not suffer from the partial occupancy limit. Our method can be performed directly on 3D‐RISM output within minutes. It is extremely useful for examining multiple specific solvent–solute interactions, as a convenient method for generating initial solvent structures for molecular dynamics calculations, and may assist in refinement of experimental structures. © 2012 Wiley Periodicals, Inc.     

Study of enrichment factors for six β‐blockers in aliphatic alcohols by hollow‐fiber liquid‐phase microextraction

The selectivity of a suitable organic solvent is key for extraction in liquid‐phase microextraction experiments. Nevertheless, the screening process remains a daunting task. Our research aimed to study the relationship between extraction efficiency and extraction solvents, analytes, and finally select the appropriate extraction solvent. In the present article, β‐blockers and six extraction solvents were chosen as the models and hollow‐fiber liquid‐phase microextraction was conducted. The relationship was built by statistical analysis on the data. Factors affecting extraction efficiency including the logarithms of the octanol/water partition coefficient (logP_o/w) of analytes, acid dissociation constants, the logarithms of the octanol/water partition coefficient of solvents and pH of the sample solution were investigated. The results showed that a low water solubility of extraction solvent is the foundation to ensure higher extraction efficiency. Moreover, when ΔlogP_o/w > 0, a higher extraction efficiency is observed at lower ΔlogP_o/w, on the contrary, when ΔlogP_o/w < 0, extraction efficiency is higher as the absolute value of ΔlogP_o/w becomes greater. Finally, the relationship between enrichment factor and extraction solvents, analytes was established and a helpful guidance was provided for the selection of an optimal solvent to obtain the best extraction efficiency by liquid‐phase microextraction.     

Experimental observation of preferential solvation on a radical ion pair using MARY spectroscopy

The effect of preferential solvation on the exciplex luminescence detected magnetic field effect has been studied using magnetic-field-effect-on-reaction-yield (MARY) spectroscopy. By designing solvent mixtures which can provide a micro-environment around the magneto-sensitive radical ion pair (RIP) from highly heterogeneous to quasi-homogenous, the effect of the polarity scan on an absolute magnetic field effect (χ(E)) and B(1/2) (the field value marking half saturation) has been studied on the system 9,10-dimethylanthracene (fluorophore)/N,N'-dimethylaniline (quencher). While the trend in χ(E) (although with subtle differences) follows the usual norm of passing through maxima with increasing polarity, the B(1/2) values show either a large monotonic decrease (for heterogeneous solvents) or remain constant (for quasi-homogenous systems) with increasing polarity. The observations have been interpreted invoking the concept of amplification of the "cage-effect" as a result of preferential solvation in binary solvents and its influence on the decaying exciplex. The use of ternary solvents further confirms the proposed mechanism. Additionally electron hopping from the radical ion pair to the surrounding neutral donor molecules could also possibly contribute to the observed trend.     

Efficient preparative separation of 6‐(4‐aminophenyl)‐5‐methyl‐4, 5‐dihydro‐3(2H)‐pyridazinone enantiomers on polysaccharide‐based stationary phases in polar organic solvent chromatography and supercritical fluid chromatography

6‐(4‐Aminophenyl)‐5‐methyl‐4,5‐dihydro‐3(2H)‐pyridazinone is a key synthetic intermediate for cardiotonic agent levosimendan. Very few studies address the use of chiral stationary phases in chromatography for the enantioseparation of this intermediate. This study presents two efficient preparative methods for the isolation of (R)(?)‐6‐(4‐aminophenyl)‐5‐methyl‐4,5‐dihydro‐3(2H)‐pyridazinone in polar organic solvent chromatography and supercritical fluid chromatography using polysaccharide‐based chiral stationary phases and volatile organic mobile phases without additives in isocratic mode. Under optimum conditions, Chiralcel OJ column showed the best performance (α = 1.71, Rs = 5.47) in polar organic solvent chromatography, while Chiralpak AS column exhibited remarkable separations (α = 1.81 and Rs = 6.51) in supercritical fluid chromatography with an opposite enantiomer elution order. Considering the sample solubility, runtime and solvent cost, the preparations were carried out on Chiralcel OJ column and Chiralpak AS column (250 × 20 mm i.d.; 10 µm) in polar organic mode and supercritical fluid chromatography mode with methanol and CO₂/methanol as mobile phases, respectively. By utilizing the advantages of chromatographic techniques and polysaccharide‐based chiral stationary phases, this work provides two methods for the fast and economic preparation of (R)(?)‐6‐(4‐aminophenyl)‐5‐methyl‐4,5‐dihydro‐3(2H)‐pyridazinone, which are suitable for the pharmaceutical industry.