Design and Synthesis of Cyclodextrin-Based Rotaxanes and Polyrotaxanes

Rotaxanes are compounds in which a ring is threaded by a chain having bulky terminal cap groups. In this article, we review the design, synthesis and characterization of rotaxanes and polyrotaxanes of cyclodextrins threaded by an alkyl chain or a poly(ethylene glycol) as well as the synthesis of a light-driven molecular shuttle based on a cyclodextrin-rotaxane.     

Hard and soft acids and bases: atoms and atomic ions

The structural origin of hard-soft behavior in atomic acids and bases has been explored using a simple orbital model. The Pearson principle of hard and soft acids and bases has been taken to be the defining statement about hard-soft behavior and as a definition of chemical hardness. There are a number of conditions that are imposed on any candidate structure and associated property by the Pearson principle, which have been exploited. The Pearson principle itself has been used to generate a thermodynamically based scale of relative hardness and softness for acids and bases (operational chemical hardness), and a modified Slater model has been used to discern the electronic origin of hard-soft behavior. Whereas chemical hardness is a chemical property of an acid or base and the operational chemical hardness is an experimental measure of it, the absolute hardness is a physical property of an atom or molecule. A critical examination of chemical hardness, which has been based on a more rigorous application of the Pearson principle and the availability of quantitative measures of chemical hardness, suggests that the origin of hard-soft behavior for both acids and bases resides in the relaxation of the electrons not undergoing transfer during the acid-base interaction. Furthermore, the results suggest that the absolute hardness should not be taken as synonymous with chemical hardness but that the relationship is somewhat more complex. Finally, this work provides additional groundwork for a better understanding of chemical hardness that will inform the understanding of hardness in molecules.     

Synthesis and Antimicrobial Activity of New Pyridothienopyrimidines and Pyridothienotriazines

5‐Acetyl‐3‐amino‐4‐aryl‐6‐methylthieno[2,3‐b]pyridine‐2‐carboxamides ( 5a,b ) were reacted with triethyl orthoformate or nitrous acid to give the corresponding pyrimidinones 6a,b and triazinones 7a,b . The reaction of 5a,b with acetic anhydride was carried out and its products were identified as a mixture of 8‐acetyl‐9‐aryl‐2,7‐dimethylpyrido[3′,2′:4,5]thieno[3,2‐d]pyrimidine‐4(3H)‐one ( 9a,b ) and related 5‐acetyl‐4‐aryl‐3‐biacetylamino‐6‐methylthieno[2,3‐b]pyridine‐2‐carbonitrile ( 10a,b ). Reaction of 7a with some halocompounds afforded the N‐alkylated triazinones 8a‐c . Chlorination of 6a,b and 9a,b with phosphorus oxychloride produced 4‐chloropyrimidines 11a‐d which were used as precursors for the rest of the target heterocycles. Some of the prepared compounds were tested in vitro for their antimicrobial activities.     

Total synthesis and biological evaluation of halipeptins A and D and analogues

The marine-derived halipeptins A (1a) and D (1d) and their analogues 3a, 3d and 4a, 4d were synthesized starting from building blocks 10, 13, 14a or 14d, 15, and 16. The first strategy for assembling the building blocks, involving a macrolactamization reaction to form the 16-membered ring hydroxy thioamide 52d as a precursor, furnished the epi-isoleucine analogue (4d) of halipeptin D, whereas a second approach involving thiazoline formation prior to macrolactamization led to a mixture of halipeptins A (1a) and D (1d) and their analogues 3a, 3d (epimers at the indicated site) and 4a, 4d (epimers at the indicated site). The same route starting with D-Ala resulted in the exclusive formation of the epimeric halipeptin D analogue 3d. The synthesized halipeptins, together with the previously constructed oxazoline analogues 5d and 6d, were subjected to biological evaluation revealing anti-inflammatory properties for 1a, 1d, and 6d while being noncytotoxic against human colon cancer cells (HCT-116).     

Synthesis and Reactions of Enediynes and Enyne-Allenes

The thermal cycloaromatization reactions of (Z)-3-hexene-1,5-diynes (enediynes) and (Z)-1,2,4-heptatrien-6-ynes (enyne-allenes) provide easy entries to a variety of carbon biradicals. Several new synthetic routes to these highly unsaturated compounds were developed by using multifunctional reagents properly substituted with combinations of boron, silicon, and tin appendages. Condensation of γ-(trialkylsilyl)allenylboranes 1 and 2 with conjugated acetylenic and allenic aldehydes followed by the elimination step of the Peterson olefination reaction furnished enediynes and enyne-allenes with high geometric purity. Convenient procedures for the synthesis of enediynes and enyne-allenes were also developed by using alkenylboronic ester 28 and the trimethyltin-substituted alkenylboranes 34 for cross-coupling reactions. On heating, acyclic enyne-allene 22 underwent a sequence of intramolecular transformations through biradical intermediates to form 26 , providing a new example of a one-step 0 → ABCD ring construction of the tetracyclic-steroidal skeleton.     

Pentacyclic and Hexacyclic Osmaarynes and Their Derivatives

Although osmabenzyne, osmanaphthalyne, osmaphenanthryne, and osmaanthracyne have been previously reported, the synthesis of polycyclic osmaarynes is still a challenge. Herein, we report the successful synthesis of the first pentacyclic osmaarynes (pyreno[b]osmabenzynes 1 a and 2 a ) and hexacyclic osmaaryne (peryleno[b]osmabenzyne 3 a ). Nucleophilic reaction of osmaarynes was used to obtain the corresponding pyreno[b]osmium complexes ( 1 and 2 ) and peryleno[b] osmium complex ( 3 ), which exhibited near-infrared luminescence and aggregation-induced emission (AIE) properties. Complexes 2 and 3 are resistant to photodegradation, and complex 2 has better photothermal conversion properties than 3 .     

Preparation and evaluation of bipyridyl-tagged reagents and scavengers

The synthesis of three bipyridyl-tagged reagents and one scavenger is described. Of the three reagents, the carbodiimide derivative proved to be effective as a coupling reagent for amide formation and the removal of the coupling side product from the reaction mixture by complexation onto a Cu-derivatised resin has been successfully demonstrated. This purification process was thoroughly optimised using a DOE approach and the procedure subsequently applied to the use of a bipyridyl-tagged amine as an isocyanate scavenger. Preliminary results clearly demonstrate the potential of using chelation tags such as bipyridine units as a means for removing solution phase reagents and scavengers from reaction mixtures providing an attractive alternative to their resin-bound and fluorous-tagged counter-parts.     

Sealed and temperature-controlled sample cell for inverted and confocal microscopes and fluorescence correlation spectroscopy

Precise temperature control of sample environments plays a key role while exploring biological systems or temperature-sensitive materials. We have developed a sample cell for inverted microscopes, which allows a temperature accuracy of ±0.05 K in a temperature range of 5 to 65 °C, with an absolute precession of ±0.1 K. Our sample cell is developed for requirements of single-molecule experiments, which comprises easy-to-clean and well-sealed devices to prevent solvent evaporation. The applied control algorithm permits a tunable independent setting of heat and cooling behavior and allows the application on microscopes without any objective heating. For measuring precise and absolute diffusion coefficients with two-focus fluorescence correlation spectroscopy, the exact control of the sample temperature is essential. We performed diffusion measurements of TetraSpeck 100-nm fluorescent latex particles and of temperature-sensitive microgels in aqueous solutions to demonstrate the excellent temperature stability and reproducibility of the device.     

Synthesis and flocculation performance of graft and random copolymer microgels of acrylamide and diallyldimethylammonium chloride

Graft (from linear homopolymers) and random (from a linear random copolymer) copolymer microgels of diallyldimethylammonium chloride (DADMAC) and acrylamide were synthesized via a free-radical mechanism using a γ-radiation technique. These copolymer microgels were evaluated as flocculants on a model dilute TiO₂ colloid suspension using a turbidimeter and a disc centrifuge photosedimentometer, and their performances were compared with the linear homopolymers and their blends. It was found that microgels produced after an appropriate irradiation time showed improved flocculation behavior over their nonirradiated linear counterparts. The graft microgels performed better than the corresponding random microgels. For a γ-radiation dosage of 100 krad/h, the graft microgels obtained by irradiating a 30% DADMAC (by weight) homopolymer blend for 3 h showed the maximum reduction in the relative turbidity of the TiO₂ suspension as well as the largest fraction of larger particles flocculated. Received: 18 May 1999 Accepted in revised form: 1 June 1999     

Past and Present of Sol-Gel Science and Technology

In the last twenty years sol-gel science has undergone a spectacular development. The various stages of the sol-gel process have been scrutinised in considerable detail and a sound basis for future technological developments established. In the beginning the studies centred mainly on silica and silicate glasses and were progressively extended to many ceramics and composites. A turning point was reached with the emergence of ormosils and of organic-inorganic nanocomposites. This opened the gateway to whole classes of new materials. The present studies show a definite tendency towards very specialised high-tech applications.     

Tetradehydroadamantane-1,3,5,7-di- and tetracations and their helium and hydride inclusion complexes: spherical aromaticity and evidence for a bonding interaction between carbon and helium

The unusual stability of the experimentally known 1,3-dehydro-5,7-adamantyl dication was previously explained by four-center two-electron aromaticity with three-dimensional (tetrahedral) topology. Magnetic criteria (ACID and ring-current analysis) now demonstrate that there is also a very strong contribution from hyperconjugation with all six methylene bridges. The delocalized system of electrons thus includes all valence electrons, and the structure, therefore, should rather be described as a spherically aromatic 50-electron system. The corresponding Td-symmetric tetracation with 48 electrons is antiaromatic and not a minimum structure. With a He atom or a hydride ion at the center of the cage, the tetracation is predicted to form a kinetically stable complex. Magnetic criteria demonstrate that the antiaromaticity is greatly reduced, and a bond analysis hints at bonding interactions between He (and H-) and the carbon atoms of the adamantane cage.     

Metal-induced specific and nonspecific oligonucleotide folding studied by FRET and related biophysical and bioanalytical implications

Metal induced nucleic acid folding has been extensively studied with ribozymes, DNAzymes, tRNA and riboswitches. These RNA/DNA molecules usually have a high content of double-stranded regions to support a rigid scaffold. On the other hand, such rigid structural features are not available for many in vitro selected or rationally designed DNA aptamers; they adopt flexible random coil structures in the absence of target molecules. Upon target binding, these aptamers adaptively fold into a compact structure with a reduced end-to-end distance, making fluorescence resonance energy transfer (FRET) a popular signaling mechanism. However, nonspecific folding induced by mono- or divalent metal ions can also reduce the end-to-end distance and thus lead to false positive results. In this study we used a FRET pair labeled Hg(II) binding DNA and monitored metal-induced folding in the presence of various cations. While nonspecific electrostatically mediated folding can be very significant, at each tested salt condition, Hg(II) induced folding was still observed with a similar sensitivity. We also studied the biophysical meaning of the acceptor/donor fluorescence ratio that allowed us to explain the experimental observations. Potential solutions for this ionic strength problem have been discussed. For example, probes designed to signal the formation of double-stranded DNA showed a lower dependency on ionic strength.     

WC/天然沸石纳米复合材料的制备与电催化活性

以天然沸石为载体,偏钨酸铵为钨源,将机械化学法与原位还原碳化技术结合,制备了碳化钨与天然沸石的纳米复合材料.制备过程中,首先对天然沸石进行预处理,然后按硅钨摩尔比为2:1配置偏钨酸铵与沸石混合物,经机械球磨得到三氧化钨与沸石复合前驱体,再将前驱体在管式炉内1173K温度下,在CH4与H2混合气氛中还原碳化即得碳化钨与沸石的纳米复合材料.采用X射线衍射(XRD)、扫描电子显微镜(SEM)和X射线能量散射谱(EDS)分别对样品的晶相、形貌、微结构和化学组成进行了表征.结果表明,样品主要由一碳化钨、碳化二钨、石英、丝光沸石、斜发沸石等物相组成.其中,一碳化钨晶粒约为30nm,碳化二钨的晶粒约为20nm.应用粉末微电极测试了样品在中性溶液中对对硝基苯酚的电催化活性.结果表明,在中性溶液中样品对对硝基苯酚电催化活性优于介孔空心球状碳化钨,样品的电还原催化活性与其WC的质量分数和WC与W2C的质量比相关.碳化钨与沸石构成复合材料后,两者具有明显的协同效应.     

Graphene-Oxide-Based Fluoro- and Chromo-Genic Materials and Their Applications

Composite materials and their applications constitute a hot field of research nowadays due to the fact that they comprise a combination of the unique properties of each component of which they consist. Very often, they exhibit better performance and properties compared to their combined building blocks. Graphene oxide (GO), as the most widely used derivative of graphene, has attracted widespread attention because of its excellent properties. Abundant oxygen-containing functional groups on GO can provide various reactive sites for chemical modification or functionalization of GO, which in turn can be used to develop novel GO-based composites. This review outlines the most recent advances in the field of novel dyes and pigments encompassing GO as a key ingredient or as an important cofactor. The interactions of graphene with other materials/compounds are highlighted. The special structure and unique properties of GO have a great effect on the performance of fabricated hybrid dyes and pigments by enhancing the color performance of dyes, the anticorrosion properties of pigments, the viscosity and rheology of inks, etc., which further expands the applications of dyes and pigments in dyeing, optical elements, solar-thermal energy storage, sensing, coatings, and microelectronics devices. Finally, challenges in the current development as well as the future prospects of GO-based dyes and pigments are also discussed. This review provides a reference for the further exploration of novel dyes and pigments.     

Synthesis of Berberine and Canagliflozin Chimera and Investigation into New Antibacterial Activity and Mechanisms

Berberine is an isoquinoline alkaloid isolated from Chinese herbal medicines such as Coptis chinensis. It has many pharmacological actions, such as antibacterial, hypoglycemic, anti-inflammatory, and so on. However, due to the low lipophilicity of berberine, it is difficult to penetrate the bacterial cell membrane and also difficult to be absorbed orally and usually needs a relatively high dose to achieve the ideal effect. The purpose of this study is to transform the structure of berberine in order to improve the bioavailability of berberine and reduce the dosage. Moreover, we introduce a pharmacophore named Canagliflozin, a hypoglycemic drug (which was also found to have potential anti-bacterial activity) into BBR to see whether this new compound has more existed activities. We at first connected berberine with Canagliflozin, to form a new compound (BC) and see whether BC has synergic effects. We use microbroth dilution method to determine the minimum inhibitory concentration of BC, determine the bacterial growth with the enzyme labeling instrument, observe the formation of bacterial biofilm with crystal violet staining method, observe the bacterial morphology with field emission scanning electron microscope, and determine the intracellular protein with SDS-PAGE. The above indicators reflect the damage of BC to bacteria. New compound BC was successfully obtained by chemical synthesis. The minimal inhibitory concentration of compound BC on three bacteria was significantly better than that of berberine and canagliflozin alone and the combination of berberine and canagliflozin. Moreover, compound BC has obvious destructive effect on bacterial morphology and biofilm, and the compound also has destructive effect on intracellular proteins. Therefore, new compound BC has broad-spectrum antibacterial activity and the inhibitory effect of BC might play a role by destroying the integrity of biofilm and the intracellular protein of bacteria. In conclusion, we create a new molecular entity of berberine and Canagliflozin chimera and open up a new prospect for berberine derivatives in the treatment of bacterial infection.     

Combinatorial and noncommutative list-processing and associated graphs

Recently the authors have proposed a list-processing approach to the modeling of algebraic quantum field theory methods in quantum mechanics in which the noncommutative algebra of quantum-mechanical operators is emulated by lists. The processing produces reordered sequences of elements of a ring with a unit commutator and generates dynamic structures which, for some initial arrangements, correspond to partially ordered graphs characterized by recurrence relations and combinatorial identities. Likewise, in another list-processing application to physical problems, a simulation of Feynman diagrams hinged on predominantly combinatorial aspects and demanded explicit generation of certain combinatorial objects. This motivated an investigation into the combinatorial nature of noncommutative list-processing and of recursive algorithms for explicit construction of combinatorial lists, which we now present. The emphasis is also placed on the consideration of associated graphs and the graph-theoretic origin of the appearance of recurrence relations in the reordering theorems of the noncommutative algebra.     

Proteomics and Its Application in Biomarker Discovery and Drug Development

Proteomics is a research field aiming to characterize molecular and cellular dynamics in protein expression and function on a global level. The introduction of proteomics has been greatly broadening our view and accelerating our path in various medical researches. The most significant advantage of proteomics is its ability to examine a whole proteome or sub-proteome in a single experiment so that the protein alterations corresponding to a pathological or biochemical condition at a given time c…     

Concise and Efficient Total Syntheses of Alkannin and Shikonin

Two enantiomic natural products with wound-healing properties , alkannin ( 1 ) and shikonin ( 2 ), are accessible by a short and efficient total synthesis. The success was achieved by a novel protecting system for masking of 5,8-dihydroxy-1,4-naphthoquinones (naphthazarins) and a highly stereoselective ketone reduction.     

Total synthesis and biological activity of neopeltolide and analogues

Combining the core structure of neopeltolide, lactone 16 a, with the oxazole-containing side chain 23 via a Mitsunobu reaction provided the cytotoxic natural product neopeltolide (2). The side chain 23 was prepared from oxazolone 24 via the corresponding triflate. Key steps in the preparation of 23 were a Sonogashira coupling, an enamine alkylation, and a Still-Gennari Horner-Emmons reaction. By changing the Leighton reagent in the allylation step, the 11-epimer of lactone 16 a, compound 50 was prepared. This led to 11-epi-neopeltolide 51. The 5-epimer of neopeltolide, compound 52, could be obtained from the minor isomer of the Prins cyclization. Furthermore, a range of analogues with modifications in the side chain were prepared. All derivatives were checked for toxicity effects on mammalian cell cultures and inhibitory effects on NADH oxidation in submitochondrial particles of bovine heart. Modifications in the lactone part are tolerated to some degree. On the other hand, shortening the distance between the oxazole and the lactone causes a significant drop in activity. Analogue 65 with an additional double bond is equally or even more active than neopeltolide itself.     

Lipidated ras and rab peptides and proteins--synthesis, structure, and function

Chemical biology can be defined as the study of biological phenomena from a chemical approach. Based on the analysis of relevant biological phenomena and their structural foundation, unsolved problems are identified and tackled through a combination of chemistry and biology. Thus, new synthetic methods and strategies are developed and employed for the construction of compounds that are used to investigate biological procedures. Solid-phase synthesis has emerged as the preferred method for the synthesis of lipidated peptides, which can be chemoselectively ligated to proteins of the Ras superfamily. The generated peptides and proteins have solved biological questions in the field of the Ras-superfamily GTPases that are not amendable to chemical or biological techniques alone.