Influence of weakly bound adduct ions on breath trace gas analysis by selected ion flow tube mass spectrometry (SIFT-MS)

This paper describes how weakly bound adduct ions form when the precursor ions used in selected ion flow mass spectrometry, SIFT-MS, analyses, viz. H₃O⁺, NO⁺ and O₂⁺, associate with the major components of air and exhaled breath, N₂, O₂ and CO₂. These adduct ions, which include H₃O⁺N₂, H₃O⁺CO₂, NO⁺CO₂, O₂⁺O₂ and O₂⁺CO₂, are clearly seen when dry air containing 5% CO₂ (typical of that in exhaled breath) is analysed using SIFT-MS. These adduct ions must not be misinterpreted as characteristic product ions of trace gases; if so, serious analytical errors can result. However, when exhaled breath is analysed these adduct ions are partly removed by ligand switching reactions with the abundant water molecules and the problems they represent are alleviated. But the small fractions of the adduct ions that remain in the SIFT-MS spectra, and especially when they are isobaric with genuine characteristic product ion of breath trace gases, can result in erroneous quantifications; such is the case for H₃O⁺N₂ interfering with breath ethanol analysis and H₃O⁺CO₂ with breath acetaldehyde analysis. However, these difficulties can be overcome when the isobaric adduct ions are properly recognised and excluded from the analyses; then these two important compounds can be properly quantified in breath. The presence of O₂⁺CO₂ in the product ion spectra interferes with the analysis of CS₂ present at low levels in exhaled breath. It is likely that similar problems will occur as other trace compounds are detected in exhaled breath when consideration will have to be given to the possibility of overlapping between their characteristic product ions and ions produced by hitherto unknown reactions. Similar problems are evident in other systems; for example, H₃O⁺CH₄ adduct ions are observed in both SIFT-MS analyses of methane rich mixtures like biologically generated waste gases and in model planetary atmospheres.     

The quantification of carbon dioxide in humid air and exhaled breath by selected ion flow tube mass spectrometry

The reactions of carbon dioxide, CO₂, with the precursor ions used for selected ion flow tube mass spectrometry, SIFT‐MS, analyses, viz. H₃O⁺, NO⁺ and O, are so slow that the presence of CO₂ in exhaled breath has, until recently, not had to be accounted for in SIFT‐MS analyses of breath. This has, however, to be accounted for in the analysis of acetaldehyde in breath, because an overlap occurs of the monohydrate of protonated acetaldehyde and the weakly bound adduct ion, H₃O⁺CO₂, formed by the slow association reaction of the precursor ion H₃O⁺ with CO₂ molecules. The understanding of the kinetics of formation and the loss rates of the relevant ions gained from experimentation using the new generation of more sensitive SIFT‐MS instruments now allows accurate quantification of CO₂ in breath using the level of the H₃O⁺CO₂ adduct ion. However, this is complicated by the rapid reaction of H₃O⁺CO₂ with water vapour molecules, H₂O, that are in abundance in exhaled breath. Thus, a study has been carried out of the formation of this adduct ion by the slow three‐body association reaction of H₃O⁺ with CO₂ and its rapid loss in the two‐body reaction with H₂O molecules. It is seen that the signal level of the H₃O⁺CO₂ adduct ion is sensitively dependent on the humidity (H₂O concentration) of the sample to be analysed and a functional form of this dependence has been obtained. This has resulted in an appropriate extension of the SIFT‐MS software and kinetics library that allows accurate measurement of CO₂ levels in air samples, ranging from very low percentage levels (0.03% typical of tropospheric air) to the 6% level that is about the upper limit in exhaled breath. Thus, the level of CO₂ can be traced through single time exhalation cycles along with that of water vapour, also close to the 6% level, and of trace gas metabolites that are present at only a few parts‐per‐billion. This has added a further dimension to the analysis of major and trace compounds in breath using SIFT‐MS. Copyright © 2009 John Wiley & Sons, Ltd.     

In vivo evaluation of antithrombogenicity and surface analysis of ion-implanted silicone rubber

The chemical and physical structure of ion-implanted silicone rubbers has been studied in order to analyze their blood compatibility such as reduction of platelet accumulation owing to ion implantation. H⁺₂, He⁺, C⁺, O⁺, O⁺₂, N⁺, N⁺₂, Ne⁺, Na⁺, Ar⁺, K⁺, and Kr⁺ ion implantations were performed at an energy of 150 keV with fluences between 1 × 10¹⁷ and 3 × 10¹⁷ ions/cm² at room temperature. Results of FT-IR-ATR showed that ion implantation broke the original chemical bond to form new radicals such as OH, >C = O, SiH, and CH₂. The formation of these radicals depended on the ion species employed: >C = O formation by O⁺ or O⁺₂ implantation and formation of amines by N⁺ or N⁺₂ implantation. The results of Raman spectroscopy showed that ion implantation always produced a peak at near 1500 cm⁻¹, although the intensity of this peak was dependent on the ion species. The light ions like H⁺₂ and He⁺ were more effective than heavy ions in producing this peak, and O⁺₂ implantation was the most effective on producing amorphous carbon. These results indicated that >C = O and amorphous carbon, generated by O⁺₂ implantation, may improve the antithrombogenicity. The antithrombogenicity was tested by the superior vena cava (SVC) indwelling method for two days in rats with in-111-tropolone-platelets, and by the inferior vena cava (IVC) indwelling method for periods of 1–4 weeks in dogs. Results of the SVC indwelling method showed that platelet accumulation on H⁺₂ and O⁺₂ implanted specimens decreased. In particular 1 × 10¹⁷ O⁺₂/cm² implantation caused both accumulation onto specimens and the SVC to decrease. Macroscopic views of the ion-implanted IVC specimens in dogs revealed little thrombus formation. It is concluded that ion implantation into silicone rod is a useful technique to improve its antithrombogenicity.     

Proton transfer reactions from H3+ ions to N2, O2, and CO molecules

The rate constants for proton transfer from H₃⁺ ions to N₂, O₂, and CO have been measured as function of hydrogen buffer gas partial pressure. The rate constant for proton transfer from H₃⁺ to N₂ shows a very large pressure dependence, increasing from 1.0 × 10^?9 cm³/s at low H₂ partial pressures to 1.7 × 10^?9 cm³/s at high H₂ partial pressures. The rate constants for proton transfer from H₃⁺ to O₂ and CO are constant with partial pressure of H₂; giving values of 6.4 × 10^?10 cm³/s and 1.7 × 10^?9 cm³/s, respectively. The roles of excess vibrational energy in H₃⁺ ions and of equilibrium between forward and back reaction are discussed. Back reaction is observed only for the reaction of H₃⁺ ions with O₂, and an equilibrium constant of K = 2.0 ± 0.4 at 298 K has been determined. From these data the proton affinity of O₂ is deduced to be 0.47 ± 0.11 kcal/mole higher than that of H₂.     

Vacuum ultraviolet photon emission stimulated by H2+, N2+, and CO+ collisions with surfaces

Intravalence and Rydberg-type electronic transitions from excited projectile atoms and ions have been observed in the spectral range 30-200 nm as a result of 3 keV H⁺₂, N⁺₂, and CO⁺ bombardment of magnesium and graphite surfaces. Population of both types of excited states is consistent with an electron promotion mechanism resulting from close atomic encounters.     

Experiments and Calculations on Photoionization and Dissociative Photoionization of CH2CO

The dissociative photoionization of molecular‐beam cooled CH₂CO in a region of ?10–20 eV was investigated with photoionization mass spectrometry using a synchrotron radiation as the light source. Photoionization efficiency curves of CH₂CO⁺ and of observed fragment ions CH₂⁺, CHCO⁺, HCO⁺, C₂O⁺, CO⁺, and C₂H₂⁺ were measured to determine their appearance energies. Relative branching ratios as a function of photon energy were determined. Energies for formation of these observed fragment ions and their neutral counterparts upon ionization of CH₂CO are computed with the Gaussian‐3 method. Dissociative photoionization channels associated with six observed fragment ions are proposed based on comparison of determined appearance energies and predicted energies. The principal dissociative processes are direct breaking of C=C and C‐H bonds to form CH₂⁺ + CO and CHCO⁺ + H, respectively; at greater energies, dissociation involving H migration takes place.     

Polyatomic ions in inductively coupled plasma–mass spectrometry: Part II: Origins of N2H and HxCO ions using experimental measurements combined with calculated energies and structures

Several polyatomic ions in inductively coupled plasma–mass spectrometry are studied experimentally and by computational methods. Novel calculations based on spin-restricted open shell second order perturbation theory (ZAPT2) and coupled cluster (CCSD(T)) theory are performed to determine the energies, structures and partition functions of the ions. These values are combined with experimental data to evaluate a dissociation constant and gas kinetic temperature (T_gas) value. In our opinion, the resulting T_gas value can sometimes be interpreted to deduce the location where the polyatomic ion of interest is generated. The dissociation of N₂H⁺ to N₂⁺ leads to a calculated T_gas of 4550 to 4900 K, depending on the computational data used. The COH⁺ to CO⁺ system yields a similar temperature, which is not surprising considering the similar energies and structures of COH⁺ and N₂H⁺. The dissociation of H₂CO⁺ to HCO⁺ leads to a much lower T_gas (< 1000 to 2000 K). Finally, the dissociation of H₂COH⁺ to HCOH⁺ generates a T_gas value between those from the other H_xCO⁺ ions studied here. All of these measured T_gas values correspond to formation of extra polyatomic ion in the interface or extraction region. The computations reveal the existence of isomers such as HCO⁺ and COH⁺, and H₂CO⁺ and HCOH⁺, which have virtually the same m/z values and need to be considered in the interpretation of results.     

The rate coefficients for several ternary association reactions at thermal energies

The rate coefficients k for the ternary association reactions of CH₃⁺ and CD₃⁺ with H₂, N₂, O₂ CO and CO₂ N₂⁺ with N₂, and C⁺ with H₂ and D₂ have been measured within the temperature range 80–520 K in helium buffer gas. In every case, k ∝ AT^?n and the magnitudes of k are greater when the deuterated species are involved.     

Ion cyclotron resonance studies of some reactions of C+ ions

Product distributions and rate constants for the reaction of ground state C⁺ ions with O₂, NO, HCl, CO₂, H₂S, H₂O, HCN, NH₃, CH₄, H₂CO, CH₃OH, and CH₃NH₂ have been measured. Rate constants were obtained using ion cyclotron resonance trapped ion methods at JPL, and product distributions were obtained using a tandem (Dempster-ICR) mass spectrometer at the University of Utah. Rapid carbon isotope exchange has also been observed in C⁺-CO collisions.     

Wavelength-resolved fluorescence lifetimes of gas-phase ions: CO2+ and CS2+

A method is described for measuring wavelength-resolved fluorescence lifetimes of ions formed by HeIα photoionization, using electric-field drift of the ions in competition with fluorescence. Fluorescence lifetimes of 216 and 232 ns for the 357 nm and 378 nm peaks of N₂O⁺, and 3.5 μs for the à → X? band of CS₂⁺, were measured. The wavelength-resolved à → X? band of CO₂⁺ showed no significant dependence of fluorescence lifetime on V′, but there is some indication of variation in the CS₂⁺ lifetimes in the à → X? band.     

Specific O₂⁻ generation in corona discharge for ion mobility spectrometry

This study deals with O₂⁻ generation in corona discharge (CD) in point to plane geometry for single flow ion mobility spectrometry (IMS) with gas outlet located behind the ionization source. We have designed CD of special geometry in order to achieve the high O₂⁻ yield. Using this ion source we have achieved in zero air conditions that up to 74% all negative ions were O₂⁻ or O₂⁻(H₂O). It has been demonstrated that the non-electronegative nitrogen positively influences the efficiency of O₂⁻ generation in O₂/N₂ mixtures. The reduced ion mobility of 2.27 cm² V⁻¹ s⁻¹ has been measured for O₂⁻/O₂⁻(H₂O) ions in zero air. Additional ions detected in zero air (less than 200 ppb CO₂) using the mass spectrometric and IMS technique were, NO₂⁻, N₂O₂⁻ (2.37 cm² V⁻¹ s⁻¹), NO₃⁻, N₂O₃⁻ and N₂O₃⁻(H₂O). The CO₃⁻ and CO₄⁻ ions have been detected after the introduction of 5 ppm CO₂ into zero air.     

Tandem mass spectrometry studies of acetone and acetone/water cluster ions

Ion clusters were formed in a temperature-variable high-pressure ion source from neat acetone and acetone/water mixtures and subjected to tandem mass spectrometry studies-unimolecular and collisionally activated mass-analyzed ion kinetic energy spectroscopy. The predominance of water loss from H⁺(H₂0)(A) _l=3, where A = acetone, suggests that the solvation sphere around H₃O⁺ does not close at l = 3, contrary to the case of acetonitrile or dimethyl ether. The results may be interpreted in terms of suggested ion structures which involve isomerization enroute to dissociation. The virtual absence of H/D scrambling in the collisionally activated dissociation of H₃O⁺(DA)₃, DA =acetone-d ₆, and of D₃O⁺(A)₃ means that if enolization takes place, it is a rate-determining step in an irreversible isomerization. The stability of H⁺(H₂O)(A)₃ is a dominant factor in the observation of acetone loss from H⁺(H₂0)(A)₄.     

Coulomb explosion dynamics of N2O in intense laser-field: Identification of new two-body and three-body fragmentation pathways

The Coulomb explosion process of N₂O in an intense laser-field (∼5 PW/cm²) has been investigated by the high-resolution time-of-flight (TOF) spectroscopy. Six two-body explosion pathways involving the NO⁺, NO²⁺, N₂ ⁺ molecular ions have been securely identified from the momentum-scaled TOF spectra of the fragment ions. Assuming a linear geometry, three-body explosion pathways were investigated by sequential and concerted explosion models. When the concerted model is adopted, the observed momentum distributions of six atomic ion channels; N⁺, N²⁺, N³⁺, O⁺, O²⁺ and O³⁺, were well fitted using the Gaussian momentum distribution with the optimized bond elongation factor of 2.2(3). From the yields of individual Coulomb explosion pathways determined by the fit, the abundance of the parent ions, N₂O^z+ (z=2–8), prior to the two- body and three-body explosion processes was found to have a smooth distribution with a maximum at z∼3.     

A flowing afterglow study of uranium tetraborohydride

Ionization-fragmentation of uranium(IV) tetraborohydride, U(BH₄)₄, by He⁺ and by N⁺/N₂⁺ yields, predominantly, U(BH₅)⁺ and U(B₂H₈)⁺, respectively. Attachment of thermal electrons yields U(BH₄)₄^? and ions of 1, 2, and 3 mass units less. Fluoride transfer with SF₆^?, BF₄^?, and UF_n^? (n = 5–7) and reactions with other small ions (O^?, O₂^?, NO₂^?, F^?, Cl^?, O₂⁺) are described.     

Distinguishing two isomeric mephedrone substitutes with selective reagent ionisation mass spectrometry (SRI‐MS)

The isomers 4‐methylethcathinone and N‐ethylbuphedrone are substitutes for the recently banned drug mephedrone. We find that with conventional proton transfer reaction mass spectrometry (PTR‐MS), it is not possible to distinguish between these two isomers, because essentially for both substances, only the protonated molecules are observed at a mass‐to‐charge ratio of 192 (C₁₂H₁₈NO⁺). However, when utilising an advanced PTR‐MS instrument that allows us to switch the reagent ions (selective reagent ionisation) from H₃O⁺ (which is commonly used in PTR‐MS) to NO⁺, O₂⁺ and Kr⁺, characteristic product (fragment) ions are detected: C₄H₁₀N⁺ (72 Da) for 4‐methylethcathinone and C₅H₁₂N⁺ (86 Da) for N‐ethylbuphedrone; thus, selective reagent ionisation MS proves to be a powerful tool for fast detection and identification of these compounds. Copyright © 2013 John Wiley & Sons, Ltd.     

The distonic ions HO+CHCH2C˙H2 and CH3C(O+H)CH2C˙H2

The distonic ions HO⁺?CHCH₂C^˙H₂ (1) and CH₃C(?O⁺H)CH₂C^˙H₂ (2) were directly generated, their decompositions characterized and their appearance energies determined by photoionization. Heats of formation derived from the appearance energies were 757 kJ mol^?1 for 1 and 692 kJ mol^?1 for 2. Deuterium labeling demonstrates that both ions decompose at low energies in the same ways as their isomers with the same skeletal structures, consistent with proposals that 1 and 2 are intermediates in the decompositions of those systems. Surprisingly, the values of the translational energy releases accompanying the formation of CH₃CO⁺ and C₂H₅CO⁺ from 2 appear to be inversely proportional to the available excess energy. The 1,2-H-shift RC(?O⁺H)CH₂C˙H₂ → RC(?O₊H)C˙HCH₃ is compared to the corresponding, non-occurring 1,2-H-shift in alkyl free radicals.     

Diisopropyl­ammonium 2‐[(2,4‐dinitro­phenyl)­sulfanyl­amino­carbonyl]­benzoate

The structure of title compound, C₆H₁₆N⁺·C₁₄H₈N₃O₇S⁻, comprises discrete ions which are inter­connected by N—H⋯O⁻ and N—H⁺⋯O⁻ hydrogen bonds, leading to a neutral one‐dimensional network along [100]. These hydrogen bonds appear to complement the Coulombic inter­action and help to stabilize the structure further.     

Kinetic studies of the deactivation of O2(1Σg+) and O(1D)

The kinetics of the deactivation of O₂(¹Σ_g⁺) is studied in real time. O₂(¹Σ_g⁺) is generated in this system by the O(¹D) + O₂ reaction following O₃laser flash photolysis in the presence of excess O₂, and it is monitored by its characteristic emission band at 762 nm. Quenching rate constants were obtained for O₂, O₃, N₂, CO₂, H₂O, CF₄and the rare gases. Since O(¹D) is the precursor for the formation of O₂(¹Σ_g⁺), the addition of an O(¹D) quencher effectively lowers the initial concentration of O₂(¹Σ_g⁺). By measuring the initial intensity of the 762 nm fluorescence signal, the relative quenching efficiencies were determined for O(¹D) quenching by N₂, CO₂, Xe, and Kr with respect to O₂; the results are in good agreement with literature values.     

Characterization of N‐methylated amino acids by GC‐MS after ethyl chloroformate derivatization

Methylation is an essential metabolic process in the biological systems, and it is significant for several biological reactions in living organisms. Methylated compounds are known to be involved in most of the bodily functions, and some of them serve as biomarkers. Theoretically, all α‐amino acids can be methylated, and it is possible to encounter them in most animal/plant samples. But the analytical data, especially the mass spectral data, are available only for a few of the methylated amino acids. Thus, it is essential to generate mass spectral data and to develop mass spectrometry methods for the identification of all possible methylated amino acids for future metabolomic studies. In this study, all N‐methyl and N,N‐dimethyl amino acids were synthesized by the methylation of α‐amino acids and characterized by a GC‐MS method. The methylated amino acids were derivatized with ethyl chloroformate and analyzed by GC‐MS under EI and methane/CI conditions. The EI mass spectra of ethyl chloroformate derivatives of N‐methyl ( 1–18 ) and N,N‐dimethyl amino acids ( 19–35 ) showed abundant [M‐COOC₂H₅]⁺ ions. The fragment ions due to loss of C₂H₄, CO₂, (CO₂ + C₂H₄) from [M‐COOC₂H₅]⁺ were of structure indicative for 1–18 . The EI spectra of 19–35 showed less number of fragment ions when compared with those of 1–18 . The side chain group (R) caused specific fragment ions characteristic to its structure. The methane/CI spectra of the studied compounds showed [M + H]⁺ ions to substantiate their molecular weights. The detected EI fragment ions were characteristic of the structure that made easy identification of the studied compounds, including isomeric/isobaric compounds. Fragmentation patterns of the studied compounds ( 1–35 ) were confirmed by high‐resolution mass spectra data and further substantiated by the data obtained from ¹³C₂‐labeled glycines and N‐ethoxycarbonyl methoxy esters. The method was applied to human plasma samples for the identification of amino acids and methylated amino acids. Copyright © 2016 John Wiley & Sons, Ltd.