Spectra and Structure of Silicon-Containing Compounds. XXVIII1 Infrared and Raman Spectra,Vibrational Assignment,and Ab Initio Calculations of Vibrational Spectrum and Structural Parameters of Vinyltrichlorosilane

The infrared spectra (3200-50 cm^–1) of gaseous and solid vinyltrichlorosilane, CH₂=CH-SiCl₃, have been recorded. In addition, the Raman spectrum (3200-10 cm^–1) of the liquid has been recorded and quantitative depolarization values obtained. The infrared spectrum of the sample dissolved in liquid xenon (–80°C) has also been recorded. Using the experimental data and normal coordinate calculations with scaled ab initio force constants, the complete vibrational assignment is proposed. The torsional mode was observed in the infrared spectrum of the gas at 69 cm^–1 and the threefold barrier of internal rotation was calculated to be 500 cm^–1 (5.98 kJ/mol). Ab initio calculations have been carried out at the restricted Hartree–Fock level of the theory as well as with full electron correlation by the perturbation method to second order with different basis sets up to 6-311+G(d,p) to obtain the optimized geometries, harmonic force constants, infrared intensities, Raman activities, depolarization ratios, and vibrational frequencies. The ab initio predicted structural parameters are compared with those obtained from a previous electron diffraction study.     

Ab initio prediction of the vibrational spectra of the hydrogen‐bonded complexes between CO and HONO2

The vibrational characteristics (vibrational frequencies and infrared intensities) for free and complexed CO and HONO₂ have been predicted using ab initio calculations at SCF and MP2 levels with different basis sets and B3LYP/6?31G(d,p) calculations. The ab initio calculations show that the complexation between HONO₂ and CO leads to two stable structures: CO … HONO₂ (1A) and OC … HONO₂ (1B). The changes in the vibrational characteristics from free monomers to complexes have been estimated. It was established that the most sensitive to the complexation is the stretching O? H vibration. In agreement with the experiment, its vibrational frequency in the complexes is shifted to lower frequency (Δν = ?123 cm^?1). The magnitude of the wave number shift is indicative of relatively strong hydrogen‐bonded interaction. The ab initio calculations at different levels predict an increase of the infrared intensity of the stretching O? H vibration for structure 1A more than five times and for structure 1B more than nine times. The most consistent agreement between the computed values of the frequency shifts for structure 1B and those experimentally observed suggests that this structure is preferred. © 2003 Wiley Periodicals, Inc. Int J Quantum Chem, 2003     

FTIR and Ab Initio Studies of Diisopropylsulfoxide and its Solutions

Fourier transform infrared (FTIR) measurements, ab initio quantum chemical calculations at the restricted Hartree–Fock (RHF) level and density functional theory (DFT) calculations have been performed to study molecular interactions in pure diisopropylsulfoxide (DiPSO) and the binary mixtures DiPSO/CCl₄ and DiPSO/water. The optimized molecular geometry, vibrational wavenumbers, dipole moments and several thermodynamic parameters of free DiPSO and DiPSO/water 1:1 complex in the ground state were calculated using the RHF and B3LYP methods with the 6-31G(d) basis set. A fitting procedure has been performed for both SO and CH stretching regions and a detailed spectral interpretation has been done based on the data obtained from ab initio calculations, infrared spectra and band deconvolution analysis.     

Vibrational spectra and structure of the photochromic 2-(2′,4′-dinitrobenzyl)pyridine

The molecular structure of the pale yellow crystals of 2-(2′,4′-dinitrobenzyl)pyridine (CH₂ form) and its photo induced ‘enamine’ NH tautomer (dark blue crystals) have been studied by means of vibrational spectra and ab initio calculations. The Raman spectrum of the photo-sensitive CH₂ form was registered by NIR FT-Raman spectroscopy by means of the Nd:YAG laser as an excitation source. Ab initio calculations have been performed for the CH₂ and NH tautomers at the Hartree-Fock level using a 6-21G** basis set. The theoretical geometrical parameters for the isolated 2-(2′,4′-dinitrobenzyl)pyridine molecule (CH₂ form) are close to the literature X-ray diffraction data. According to the theory the dihedral angle between the benzene and pyridine ring planes in the NH photo induced tautomer is about 46°, the ortho-nitro group is twisted about 25° towards the benzene ring plane, whereas the para-nitro group is coplanar to the benzene ring. The assignment of the fundamental vibration frequencies of both 2-(2′,4′-dinitrobenzyl)pyridine tautomers CH₂ and NH have been performed on the basis of Raman and infrared spectra and ab initio force field calculations. The computed frequencies are in coincidence with the registered ones; the mean deviations are between 23.7 and 28.5 cm⁻¹.     

Infrared Spectra of Krypton Solutions of Methylamine

Variable temperature (–105 to –145°C) studies of the infrared spectra (3500–400 cm^–1) of methylamine, CH₃NH₂, dissolved in liquid krypton have been recorded. From these data, the hydrogen bonding enthalpy has been determined to be 530 ± 29 cm^–1 (6.34 ± 0.35 kJ/mol). The elusive ₁₃ and ₁₄ fundamentals, which are strongly mixed CH₃ rock and NH₂ twist, have been observed at 1244 and 876 cm^–1, respectively. These assignments are supported by frequency predictions from ab initio MP2/6-31G(d) calculations where the predicted infrared intensities for these two vibrations are 0.054 and 0.002 km/mol. The ab initio predicted infrared spectrum compares very favorably with that observed in the krypton solution. Normal coordinate calculations have also been carried out for four other isotopomers of methylamine, CH₃NHD, CH₃ND₂, CD₃NH₂, and CD₃ND₂ and vibrational assignments given from previously reported infrared spectra of matrix isolated samples. The Raman spectrum of these latter three isotopes, along with the normal species, have been predicted from MP2/6-31G(d) calculations and the results compared to the experimental spectra. The equilibrium structural parameters have been obtained from ab initio calculations utilizing several different basis sets with full electron correlation by the perturbation method to second order. These predicted values are compared to the previously reported experimental structural parameters.     

The molecular and electronic structure of homoaromatic compounds: cis,cis,cis-cyclonona-1,4,7-triene and 1,4,7-trioxonin; a study by photoelectron spectroscopy and ab initio molecular orbital methods

The molecular structure of 1,4,7-trioxonin (2) has been optimised by ab initio MO studies for both crown and planar forms. The crown form is energetically preferred, but there is little resonance energy in the system, which is of a classical nature. The angle between the carbon and the COC planes is very similar to that known experimentally for cyclonona-1,4,7-triene (1). The calculations show that a heavy degree of mixing of the (CC)_π levels with LP^σ_o or with (CH₂)_sym occurs. The photoelectron spectra of both the hydrocarbon (1) and the trioxonin (2) have been assigned, on the basis of comparisons with simple molecules and by the use of ab initio calculations of single and double zeta quality.     

The structure of trimethoxymethane in the gas phase,an electron diffraction,ab initio and molecular mechanics study

The structure of trimethoxymethane in the gas phase was studied by electron diffraction, ab initio molecular orbital calculations and molecular mechanics. The molecule was found to exist almost exclusively as an asymmetric all-staggered TGG conformer. The electron diffraction structural parameters (r_g distances, r_α angles) as obtained from geometrically consistent r_α-refinements are: r(C-O) central 1.382(6) Å, r(C-O) terminal 1.418(6) Å, r(C-H) 1.112(1) Å, ∠(O-C-O) in the gauche—gauche chain 115.0(1.0)°, in the gauche-anti chains 109.2(0.6)° ∠(C-O-C) 114.3(0.6)°, ∠(O-C-H)_Me 109.9(0.3)°, methyl torsion 68(6)°. The structure is adequately reproduced by molecular mechanics calculations applying Allinger's force field. The structures of methoxymethanes can be explained in terms of the anomeric effect. This is confirmed by ab initio calculations.     

Sensitivity of the H + CH3 → CH4 recombination rate constant to the shape of the CH stretching potential

Using a potential-energy surface obtained in part from ab initio calculations, the H + CH₃ → CH₄ bimolecular rate constant at T = 300 K is determined from a Monte Carlo classical trajectory study. Representing the CH stretching potential with a standard Morse function instead ofthe ab initio curve increases the calculated rate constant by an order of magnitude. The experimental recombination rate constant is intermediate of the rate constants calculated with the Morse and ab initio stretching potentials.Two properties of the H + CH₃ α CH₄ potential-energy surface which significantly affect the recombination rate constant are the shape of the CH stretching potential and the attenuation of the H₃CH bending frequencies. Ab initio calculations with a hierarchy of basis sets and treatment of electron correlation indicate the latter is properly described [13]. The exact shape of the CH stretching potential is not delineated by the ab initio calculations, since the ab initio calculations are not converged for bond lengths of 2.0–3.0 Å [12]. However, the form of this stretching potential deduced from the highest-level ab initio calculations, and fit analytically by eq. (2), is significantly different from a Morse function. The experimental recombination rate constant is intermediate of the rate constants calculated with the Morse and ab initio CH stretching potentials. This indicates that the actual CH potential energy curve lies between the Morse and ab initio curves. This is consistent with the finding that potential energy curves for diatomics are not well described by a Morse function [12].     

Ab initio CI study and vibronic analysis of the photoelectron spectra of formaldoxime

The photoelectron spectrum of formaldoximie, CH₂NOH, has been re-investigated with higher resolution and interpreted by, means of ab initio SCF Cl calculations. Calculations have confirmed that the states increase in energy as π₁ < n₁ < π₂ < n₂ and have shown the existence of a shake-up peak at ≈15 eV. The calculation of Franck-Condon factors allowed the interpretation of the observed vibrational structure.     

Decomposing total IR spectra of aqueous systems into solute and solvent contributions: a computational approach using maximally localized Wannier orbitals

The theoretical principles underpinning the calculation of infrared spectra for condensed-phase systems in the context of ab initio molecular dynamics have been recently developed in literature. At present, most ab initio molecular dynamics calculations are restricted to relatively small systems and short simulation times. In this paper we devise a method that allows well-converged results for infrared spectra from ab initio molecular dynamics simulations using small systems and short trajectories characteristic of simulations typically performed in practice. We demonstrate the utility of our approach by computing the imaginary part of the dielectric constant epsilon"(omega) for H2O and D2O in solid and liquid phases and show that it compares well with experimental data. We further demonstrate that maximally localized Wannier orbitals can be used to separate the individual contributions of different molecular species to the linear spectrum of complex systems. The new spectral decomposition method is shown to be useful in present-day ab initio molecular dynamics calculations to compute the magnitude of the "continuous absorption" generated by excess protons in aqueous solutions with good accuracy even when other species present in the solutions absorb strongly in the same frequency window.     

Infrared and Raman spectra, ab initio calculations and vibrational assignment for 3-fluoro-1-butyne

The infrared (3500-80 cm⁻¹) and Raman (3500-20 cm⁻¹) spectra of 3-fluoro-1-butyne, CH₃CHFCCH, have been recorded for the gas and solid. Additionally, the Raman spectrum of the liquid has also been recorded to aid in the vibrational assignment. Ab initio electronic structure calculations of energies, geometrical structures, vibrational frequencies, infrared intensities, Raman activities and the potential energy function for the methyl torsion have been calculated to assist in the interpretation of the spectra. The fundamental torsional mode is observed at 251 cm⁻¹ with a series of sequence peaks falling to lower frequency. The three-fold methyl torsional barrier is calculated to be 1441 ± 20 cm⁻¹ (4.12 ± 0.06 kcal mol⁻¹) where the uncertainty is partly due to the uncertainty in values of the V₆ term. A complete vibrational assignment is proposed based on band contours, relative intensities, and ab initio predicted frequencies. Several fundamentals are significantly shifted in the condensed phases compared to values in the vapor state.     

Equilibrium Structure and Fundamental Vibrational Wavenumbers in Difluorosilanone: An ab Initio Study

High‐level ab initio calculations with large basis sets have been performed for difluorosilanone, F₂SiO. Based on these calculations, an empirically corrected theoretical equilibrium structure is derived: r_e(SiO) = 149.8(1) pm, r_e(SiF) = 155.5(1) pm, α_e(FSiF) = 104.7(3)°. Furthermore, these calculations confirm the experimental assignments of the observed infrared bands to the fundamentals in F₂SiO, except for ν₃. The previous assignment of ν₃ appears to be incorrect and should be reinvestigated.     

Structural determination of a recalcitrant molecule (S2F4)

The structure determination of S₂F₄ (or SF₃SF), the dimer of SF₂, is made difficult by the large variety of possible conformers and the instability of the compound. An electron diffraction and microwave study succeeded only with the help of a molecular model derived from ab initio calculations, after initial experimental attempts had failed. The force field required for a joint electron diffraction and microwave spectroscopy analysis was calculated by ab initio methods and adjusted to the experimental vibrational frequencies. The structure of S₂F₄ is a trigonal bipyramid with the electron lone pair, the SF group and one fluorine atom in equatorial positions. The SF₃ group is strongly distorted with the two axial SF bonds differing by 0.10 Å and bond angles between axial bonds and equatorial plane of about 77° and 92°, respectively. The geometric structure of S₂F₄ in combination with the ab initio calculations allows one to visualize the dissociation process SF₃SF → 2 SF₂ more clearly.     

Theoretical calculations of the vibrational spectra of the complex LibeF3 molecule

Ab initio calculations of the structure, force field, frequencies and intensities of normal modes of the LiBeF₃ molecule have been carried out, using basis sets of Huzinaga and Dunning in a double-zeta contraction. The calculated results are compared with the infrared spectrum of LiBeF₃ in an inert matrix obtained by Snelson et al.     

The structures of some trimers of carbon monoxide—An infrared matrix isolation spectroscopic and ab initio molecular orbital study

Using a number of potential models for the gas-phase structure of the trimer of carbon monoxide as a guide, ab initio molecular orbital calculations have been carried out on this aggregate in order to determine its probable structure and vibrational spectrum in cryogenic matrices. The Fourier transform infrared spectra of carbon monoxide trapped in argon and nitrogen matrices have been recorded and, on the basis of the results of the theoretical calculations, a search for possible absorptions which may be assigned to trimeric species has been undertaken.     

The <Emphasis Type="Italic">r</Emphasis><Subscript>0</Subscript> structural parameters of equatorial and axial chlorocyclobutane,conformational stability from temperature dependent infrared spectra of xenon solutions,and vibrational assignments

Variable temperature (?55 to ?100 °C) studies of the infrared spectra (4,000–400 cm^?1) of chlorocyclobutane, c-C₄H₇Cl, dissolved in liquid xenon have been carried out. The infrared spectrum (4,000–100 cm^–1) of the gas has also been recorded. For this puckered ring molecule the enthalpy difference between the more stable equatorial conformer and the axial form, has been determined to be 361 ± 17 cm^?1 (4.32 ± 0.20 kJ/mol). This stability order is consistent with that predicted by ab initio calculations but the ?H is much lower than the average energy value of 646 ± 73 cm^?1 obtained from the MP2 ab initio calculations or 611 ± 28 cm^?1 from the B3LYP density functional theory calculations. The percentage of the axial conformer present at ambient temperature is estimated to be 15 ± 1%. By utilizing previously reported microwave rotational constants for both conformers combined with ab initio MP2(full)/6–311+G(d,p) predicted structural values, adjusted r ₀ parameters have been obtained. The determined heavy atom structural parameters for the equatorial conformer are: the distances C–Cl = 1.783(5), C₁–C₄ = 1.539(3), C₄–C₆ = 1.558(3) Å, and angles ∠C₆C₄C₁ = 86.9(5), ∠C₄C₁C₅ = 89.7(5)°, and for the axial conformer are: the distances C–Cl = 1.803(5), C₁–C₄ = 1.547(3), C₄–C₆ = 1.557(3) Å, and angles ∠C₆C₄C₁ = 86.3(5), ∠C₄C₁C₅ = 88.9(5) and the puckering angles for the equatorial and axial conformers are 30.7(5)° and 22.3(5)°, respectively. The conformational stabilities, harmonic force fields, infrared intensities, Raman activities, depolarization ratios and vibrational frequencies have been obtained for both conformers from MP2(full)/6-31G(d) ab initio calculations and compared to experimental values where available. The results are discussed and compared to the corresponding properties of some similar molecules.     

Photoelectron spectroscopy and ab initio LCAO MO SCF calculations on thiazyl fluoride

The He l, He II and Ne I photoelectron (p.e.) spectra of thiazyl fluoride. NSF, are compared with ab initio LCAO MO SCF calculations via Koopmans' theorem. The calculations predict the valence formulation NSF, and the p.e. spectrum is consistent with this. Comparisons are drawn with the isoelectronic molecule SO₂     

Infrared and Raman spectra, conformational stability, normal coordinate analysis, ab initio calculations, and vibrational assignment of 1-fluoro-1-methylsilacyclobutane

The infrared (3500–40 cm⁻¹) spectra of gaseous and solid 1-fluoro-1-methylsilacyclobutane, c-C₃H₆SiF(CH₃), have been recorded. Additionally, the Raman spectrum (3500–30 cm⁻¹) of the liquid has been recorded and quantitative depolarization values have been obtained. Both the axial and equatorial (with respect to the methyl group) conformers have been identified in the fluid phases. Variable temperature (−55–−100°C) studies of the infrared spectra of the sample dissolved in liquid xenon have been carried out. From these data, the enthalpy difference has been determined to be 267±10 cm⁻¹ (3.19±0.12 kJ mol⁻¹), with the axial conformer being the more stable form and the only conformer remaining in the polycrystalline solid. A complete vibrational assignment is proposed for the axial conformer and many of the fundamentals for the equatorial conformer have also been identified. The vibrational assignments are supported by normal coordinate calculations utilizing ab initio force constants. Complete equilibrium geometries have been determined for both rotamers by ab initio calculations employing the 6-31G* and 6-311++G** basis sets at the levels of restricted Hartree–Fock (RHF) and/or Moller–Plesset (MP) to second order. The results are discussed and compared to those obtained for some similar molecules.     

An empirical potential for the O-H·O Hydrogen bond: Part I. Comparison with ab initio molecular orbital results

An empirical potential energy function has been devised for the O-H·O hydrogen bond, for use with the MMI force field. The energy of the hydrogen bond is described as the sum of van der Waals, electrostatic and Morse components. The function has been used to calculate the potential energy hypersurface of the water dimer, and the results are compared with published ab initio molecular orbital studies. Satisfactory agreement is obtained except for orientations involving very short H·H contacts. The geometry and hydrogen bond energy of the equilibrium linear form of (H₂O)₂ are calculated to be r(O·O) = 2.84 Å, θ = 36°, ΔE = ?5.35 kcal mol^?1, which are close to the values obtained by experiment, and from molecular orbital calculations. The relative importance of the electrostatic component of the empirical hydrogen bond energy is consistent with molecular orbital energy decomposition studies. The empirical function has also been used to calculate the energy of the water trimer in orientations which serve as models for the crystallographic bifurcated hydrogen bond. The results indicate that, in these orientations, the trimer is typically 0–3 kcal mol^?1 more stable than the dimer, a result which is consistent with ab initio calculations.     

Synthesis, molecular structure and vibrational spectra of a dimeric complex formed by cobalt and glycine

The structure of [Co(gly)(2)(OH)(2)].1.5(H(2)O) was solved by X-ray diffraction. It crystallizes in the space group P-1, with two independent dimmers in the unit cell. The results for the calculated vibrational spectra are in good agreement with the experimental one. The infrared spectrum and ab initio calculations are consistent with the crystallographic results.