Molecular switch triggered by solvent polarity: synthesis,Acid-base behavior,alkali metal ion complexation,and crystal structure

The synthesis and characterization of the new tetraazamacrocycle L, bearing two 1,1'-bis(2-phenol) groups as side-arms, is reported. The basicity behavior and the binding properties of L toward alkali metal ions were determined by means of potentiometric measurements in ethanol/water 50:50 (v/v) solution (298.1+/-0.1 K, I=0.15 mol dm(-3)). The anionic H(-1)L(-) species can be obtained in strong alkaline solution, indicating that not all of the acidic protons of L can be removed under the experimental conditions used. This species behaves as a tetraprotic base (log K(1)=11.22, log K(2)=9.45, log K(3)=7.07, log K(4)=5.08), and binds alkali metal ions to form neutral [MH(-1)L] complexes with the following stability constants: log K(Li)=3.92, log K(Na)=3.54, log K(K)=3.29, log K(Cs)=3.53. The arrangement of the acidic protons in the H(-1)L(-) species depends on the polarity of the solvents used, and at least one proton switches from the amine moiety to the aromatic part upon decreasing the polarity of the solvent. In this way two different binding areas, modulated by the polarity of solvents, are possible in L. One area is preferred by alkali metal ions in polar solvents, the second one is preferred in solvents with low polarity. Thus, the metal ion can switch from one location to the other in the ligand, modulated by the polarity of the environment. A strong hydrogen-bonding network should preorganize the ligand for coordination, as confirmed by MD simulations. The crystal structure of the [Na(H(-1)L)].CH(3)CN complex (space group P2(1)/c, a=12.805(1), b=20.205(3), c=14.170(2) A, beta=100.77(1) degrees, V=3601.6(8) A(3), Z=4, R=0.0430, wR2=0.1181), obtained using CH(2)Cl(2)/CH(3)CN as mixed solvent, supports this last aspect and shows one of the proposed binding areas.     

A novel series of vanadium-sulfite polyoxometalates: synthesis, structural, and physical studies

Reaction of NH4VO3 with sulfur dioxide affords the hexanuclear cluster (NH4)2(Et4N)[(V(IV)O)6(mu4-O)2(mu3-OH)2(mu3-SO3)4(H2O)2]Cl x H2O (1), and the decapentanuclear host-guest compound (Et4N)5{Cl subset [(VO)15(mu3-O)18(mu-O)3]} x 3 H2O (2). Sequential addition of magnesium oxide to an acidic aqueous solution of NH4VO3 (pH approximately 0) followed by (NH4)2SO3 resulted in the formation of either the non-oxo polymeric vanadium(IV) compound trans-(NH4)2[V(IV)(OH)2(mu-SO3)2] (3) or the polymeric oxovanadium(IV) sulfite (NH4)[V(IV)O(SO3)1.5(H2O)] x 2.5 H2O (4) at pH values of 6 and 4, respectively. The decameric vanadium(V) compound {Na4(mu-H2O)8(H2O)6}[Mg(H2O)6][V(V)10(O)8(mu6-O)2(mu3-O)14] x 3 H2O (5) was synthesised by treating an acidic aqueous solution of NH4VO3 with MgO and addition of NaOH to pH approximately 6. All the compounds were characterised by single-crystal X-ray structure analysis. The crystal structure of compound 1 revealed an unprecedented structural motif of a cubane unit [M4(mu4-O)2(mu3-OH)2] connected to two other metal atoms. Compound 3 comprises a rare example of a non-oxo vanadium(IV) species isolated from aqueous solution and in the presence of the reducing agent SO3(2-), while compound 4 represents a rare example of an open-framework species isolated at room temperature (20 degrees C). In addition to the synthesis and crystallographic studies, we report the IR and magnetic properties (for 1, 2 and 3) of these vanadium clusters as well as theoretical studies on compound 3.     

A Tunable Cyclic Container: Guest‐Induced Conformational Switching,Efficient Guest Exchange,and Selective Isolation of C70 from a Fullerene Mixture

An adaptable cyclic porphyrin dimer with highly flexible linkers has been used as an artificial molecular container that can efficiently encapsulate various aromatic guests (TCNQ/C₆₀/C₇₀) through strong π–π interactions by adjusting its cavity size and conformation. The planar aromatic guest (TCNQ) can be easily and selectively exchanged with larger aromatic guests (C₆₀/C₇₀). During the guest‐exchange process, the two porphyrin rings switch their relative orientation according to the size and shape of the guests. This behavior of the cyclic container has been thoroughly investigated by using UV/Vis spectroscopy, NMR spectroscopy, and X‐ray crystal structure determination of the host–guest assemblies. The electrochemical and photophysical studies demonstrated the occurrence of photoinduced electron transfer from bisporphyrin to TCNQ/C₆₀/C₇₀ in the respective host–guest assemblies. The cyclic host can form complexes with C₆₀ and C₇₀ with association constants of (2.8±0.2)×10⁵ and (1.9±0.3)×10⁸ m ⁻¹, respectively; the latter value represents the highest binding affinity for C₇₀ reported so far for zinc(II) bisporphyrinic receptors. This high selectivity for the binding of C₇₀ versus C₆₀ allows the easy extraction and efficient isolation of C₇₀ from a C₆₀/C₇₀ fullerene mixture. Experimental evidence was substantiated by DFT calculations.     

Chiral diaminopyrrolic receptors for selective recognition of mannosides, part 2: a 3D view of the recognition modes by X-ray, NMR spectroscopy, and molecular modeling

The structural features of a representative set of five complexes of octyl α- and β-mannosides with some members of a new generation of chiral tripodal diaminopyrrolic receptors, namely, (R)-5 and (S)- and (R)-7, have been investigated in solution and in the solid state by a combined X-ray, NMR spectroscopy, and molecular modeling approach. In the solid state, the binding arms of the free receptors 7 delimit a cleft in which two solvent molecules are hydrogen bonded to the pyrrolic groups and to the benzenic scaffold. In a polar solvent (CD(3)CN), chemical shift and intermolecular NOE data, assisted by molecular modeling calculations, ascertained the binding modes of the interaction between the receptor and the glycoside for these complexes. Although a single binding mode was found to adequately describe the complex of the acyclic receptor 5 with the α-mannoside, for the complexes of the cyclic receptors 7 two different binding modes were required to simultaneously fit all the experimental data. In all cases, extensive binding through hydrogen bonding and CH-π interactions is responsible for the affinities measured in the same solvent. Furthermore, the binding modes closely account for the recognition preferences observed toward the anomeric glycosides and for the peculiar enantiodiscrimination properties exhibited by the chiral receptors.     

Binding of VIVO2+, VIVOL,VIVOL2 and VVO2L Moieties to Proteins: X-ray/Theoretical Characterization and Biological Implications

Vanadium compounds have frequently been proposed as therapeutics, but their application has been hampered by the lack of information on the different V-containing species that may form and how these interact with blood and cell proteins, and with enzymes. Herein, we report several resolved crystal structures of lysozyme with bound V^IVO²⁺ and V^IVOL²⁺, where L=2,2’-bipyridine or 1,10-phenanthroline (phen), and of trypsin with V^IVO(picolinato)₂ and V^VO₂(phen)⁺ moieties. Computational studies complete the refinement and shed light on the relevant role of hydrophobic interactions, hydrogen bonds, and microsolvation in stabilizating the structure. Noteworthy is that the trypsin−V^VO₂(phen) and trypsin−V^IVO(OH)(phen) adducts correspond to similar energies, thus suggesting a possible interconversion under physiological/biological conditions. The obtained data support the relevance of hydrolysis of V^IV and V^V complexes in the several types of binding established with proteins and the formation of different adducts that might contribute to their pharmacological action, and significantly widen our knowledge of vanadium–protein interactions.     

新的氨基酸受体的合成和分子识别性质研究

从双氨基甲基手性双环胍出发,经三步反应合成了由稳定的共价键桥联双环胍、氮杂冠醚和萘环的氨基酸受体1.液-液竞争萃取和^1HNMR实验表明受体对氨基酸两性离子具有较好的侧链选择性和对映选择性,能够选择性地将L-芳香族氨基酸从水相转移到二氯甲烷有机相。     

A base-free thorium-terminal-imido metallocene: synthesis, structure, and reactivity

The synthesis, structure, and reactivity of a base-free thorium terminal-imido metallocene have been comprehensively studied. Treatment of thorium metallocenes [{η(5)-1,2,4-(Me(3)C)(3)C(5)H(2)}(2)ThMe(2)] and [{η(5)-1,3-(Me(3)C)(2)C(5)H(3)}(2)ThMe(2)] with RNH(2) gives diamides [{η(5)-1,2,4-(Me(3)C)(3)C(5)H(2)}(2)Th(NHR)(2)] (R=Me (7), p-tolyl (8)) and [{η(5)-1,3-(Me(3)C)(2)C(5)H(3)}(2)Th(NH-p-tolyl)(2)] (9), respectively. Diamides 7 and 9 do not eliminate methylamine or p-toluidine, but sublime without decomposition at 150 °C under vacuum (0.01 mmHg), whereas diamide 8 is converted at 140 °C/0.01 mmHg into the primary amine p-tolyl-NH(2) and [{η(5)-1,2,4-(Me(3)C)(3)C(5)H(2)}(2)Th=N(p-tolyl)] (10), which may be isolated in pure form. Imido metallocene 10 does not react with electrophiles such as alkylsilyl halides; however, it reacts with electron-rich or unsaturated reagents. For example, reaction of 10 with sulfur affords the metallacycle [{η(5)-1,2,4-(Me(3)C)(3)C(5)H(2)}(2)Th{N(p-tolyl)S-S}]. Imido 10 is an important intermediate in the catalytic hydroamination of internal alkynes, and an efficient catalyst for the trimerization of PhCN. Density functional theory (DFT) studies provide a detailed understanding of the experimentally observed reactivity patterns.     

Novel structural motifs consisting of chiral thiazolines: synthesis, molecular recognition, and anticancer activity

The facile synthesis of linear and cyclic chiral oligo(4-alpha/beta-methyl)thiazolines is described. Linear oligothiazolines have been efficiently synthesized by the iterative formation of thiazoline rings and two-directional block condensation. The construction of 24- to 36-membered cyclic oligothiazolines was achieved through the head-to-tail cyclo-oligomerization of doubly deprotected linear fragments. Studies of the interactions of both the linear and cyclic oligomers with chiral compounds revealed that cyclic oligomers displayed a strong binding affinity towards mandelic acid, whereas linear oligomers showed a poor affinity. Linear oligomers have been proven to inhibit the cell growth of the cancer cell lines HPAC, PC-3, and HCT-116. Studies of the structure-activity relationships showed that the IC50 values are clearly dependent on both the length and the terminal functionalities of the linear oligomers. Longer derivatives showed more potent activity (e.g., hexi- and octithiazolines exhibit IC50<1 microM) against all three cancer cell lines. In sharp contrast, cyclic oligomers were inactive to all three cell lines.     

A combined computational and experimental approach for the analysis of the enantioselective potential of a new macrocyclic receptor for N-protected alpha-amino acids

A new macrocyclic receptor incorporating a thiourea moiety has been synthesised. Crystal structures of the macrocycle showed that the receptor has a rigid backbone but the thiourea moiety can orientate itself to bind to a DMSO solvent molecule. Force-field (MMFFs) calculations were performed to model the macrocycle and its binding properties with respect to N-protected amino acids, which were measured experimentally by NMR titration. Binding free energies were calculated by using the mode integration algorithm (MINTA) or free-energy perturbation (FEP). Excellent qualitative agreement with experiment was obtained. To further exploit the accuracy of the free-energy predictions for this system, the faster free-energy algorithm MINTA was used as a prediction tool to test the binding affinity of the macrocycle towards a series of several other amino acid derivatives, which speeded up considerably the screening process and reduced laboratory costs.     

Two new bismuth salts with succinic acid: synthesis,structural, spectroscopic and thermal characterization

Two novel bismuth succinate hydrates, namely, poly[[diaqua(μ₃-butane-1,4-dicarboxylato)hemi(μ-butane-1,4-dicarboxylato)bismuth] monohydrate], {[Bi(C₄H₄O₄)_1.5(H₂O)₂]·H₂O}_n ( 1 ), and poly[[μ-aqua-aqua(μ₃-butane-1,4-dicarboxylato)(μ-butane-1,4-dicarboxylato)-μ-oxido-dibismuth] monohydrate], {[Bi₂(C₄H₄O₄)₂O(H₂O)₂]·H₂O}_n ( 2 ), have been synthesized. Their crystal structures were determined by single-crystal X-ray diffraction and the compounds were characterized by IR and Raman spectroscopy, powder X-ray diffraction and thermal analysis. The crystal structure analysis revealed that the compounds are coordination polymers, with 1 having a two-dimensional layered structure and 2 displaying a three-dimensional (3D) framework. Fully deprotonated succinate anions (C₄H₄O₄²⁻) in two different conformations (trans and gauche) are included in their composition. The Bi³⁺ cations are surrounded by O atoms from the carboxylate groups of succinate anions and aqua ligands. BiO₉ coordination polyhedra in 1 are connected in pairs by edges. These pairs are bound together by bridging succinate ligands to form layers. Bismuth coordination polyhedra of two different types (BiO₉ and BiO₇) in 2 are connected by edges to form infinite ribbons. Ribbons of polyhedra with bridging succinate ligands form a 3D polymeric structure.     

Molecular Recognition and Crystal Energy Landscapes: An X‐ray and Computational Study of Caffeine and Other Methylxanthines

We introduce a new approach to crystal‐packing analysis, based on the study of mutual recognition modes of entire molecules or of molecular moieties, rather than a search for selected atom–atom contacts, and on the study of crystal energy landscapes over many computer‐generated polymorphs, rather than a quest for the one most stable crystal structure. The computational tools for this task are a polymorph generator and the PIXEL density sums method for the calculation of intermolecular energies. From this perspective, the molecular recognition, crystal packing, and solid‐state phase behavior of caffeine and several methylxanthines (purine‐2,6‐diones) have been analyzed. Many possible crystal structures for anhydrous caffeine have been generated by computer simulation, and the most stable among them is a thermodynamic, ordered equivalent of the disordered phase, revealed by powder X‐ray crystallography. Molecular recognition energies between two caffeine molecules or between caffeine and water have been calculated, and the results reveal the largely predominant mode to be the stacking of parallel caffeine molecules, an intermediately favorable caffeine–water interaction, and many other equivalent energy minima for lateral interactions of much less stabilization power. This last indetermination helps to explain why caffeine does not crystallize easily into an ordered anhydrous structure. In contrast, the mono‐ and dimethylxanthines (theophylline, theobromine, and the 1,7‐isomer, for which we present a single‐crystal X‐ray study and a lattice energy landscape) do crystallize in anhydrous form thanks to the formation of lateral hydrogen bonds.     

Structure characterization and possible biogenesis of three new families of nortriterpenoids: schisanartane, schiartane, and 18-norschiartane

Four new, highly oxygenated nortriterpenoids with unique schisanartane skeletons, micrandilactones D-G (1-4), have been isolated from the leaves and stems of Schisandra micrantha, and their structures have been elucidated on the basis of extensive spectral studies. The postulated biogenetic sequences of sixteen highly oxygenated nortriterpenoids and bisnortriterpenoids with new skeletons from three Schisandra species are discussed and have been compared from a chemotaxonomic standpoint.     

ortho‐(Aminomethyl)phenylboronic acids—synthesis,structure and sugar receptor activity

A series of ortho‐(aminomethyl)phenylboronic acids was synthesized and their structures were determined by single‐crystal X‐ray diffraction. The structures are stabilized by the inter‐ and intramolecular hydrogen bonds. The sugar‐binding ability of these compounds was evaluated for D ‐glucose, D ‐fructose and D ‐galactose by the competition assay with Alizarin Red S (ARS). The results indicate that the sugar binding ability and selectivity towards sugars depend on the substituents in amino group. Copyright © 2008 John Wiley & Sons, Ltd.     

The complexes of macromolecules and metal nanoparticles: pseudo-template synthesis and behavior

Metal sols composed of metal nanoparticles (1 - 10 nm in diameter) protected with polymer molecules may be regarded as dispersions of polymer-metal complexes formed due to cooperative non-covalent (e.g., hydrophobic, coulombic) interaction of polymer chains with the surface of metal nanoparticles. The sols are commonly prepared by reducing of metal ions in solutions of appropriate polymers. The interactions between macromolecules and nanoparticles are reversible. In the case of long polymer chains and minute particles, the equilibrium constant of the reaction exponentially depends on the surface area of the particle. The probability of mutual “recognition” (complex formation) of growing particle and a macromolecule rapidly increases from practically zero to practically unity in narrow interval of the particle's diameters. The recognition is followed with the shadowing of the particles and the stop of their growths. Such kind of processes was termed “pseudo-template”. In frame of the concept of pseudo-template processes can be estimated: (1) the conditions at which sol particles of desirable size can be prepared, (2) the influence of temperature, polymer concentration, nanoparticles size, and other conditions on the stability of polymer - particle complex having been prepared, and (3) the conditions at which stable sol does not exist and can not be prepared at all. The interactions between metal nanoparticles and macromolecules are highly selective regard to the structure of polymer chains. The property can be effectively used for the control the size characteristics of metal nanoparticles (in course of their formation) and the stability of metal sols. The selectivity provides high conversions in catalytic chemical modification reactions in which a macromolecule is the substrate and a component of the catalyst in the same time. As an example, the hydrolysis of lactame groups in monomer unites of poly(N-vinyl pyrrolidone) catalyzed with copper sols is discussed.     

A 3D structural and conformational study of procyanidin dimers in water and hydro-alcoholic media as viewed by NMR and molecular modeling

The three-dimensional structures of 5 procyanidin dimers have been determined in a hydro-alcoholic medium and in water using 2D NMR and molecular mechanics. They are made from monomers of catechin (CAT) and epicatechin (EPI)-B1: EPI-CAT, B2: EPI-EPI, B3: CAT-CAT, B4: CAT-EPI and B2g: EPI-EPI-3-O-gallate. These tannins exist in two conformations that are in slow exchange in the NMR timescale (s), one is compact and the other extended. The compact form is found to dominate (76-98%) when the dimer is made of at least one CAT monomer (B1, B3, B4). Both forms are found in even proportions only in the case of procyanidin B2. The latter tannin can be converted into a dominant compact form when the lower EPI unit is galloylated. The finding of a predominant compact form for procyanidin dimers is discussed in relation with tannin-saliva protein interactions that are of importance for the wine-tasting/making processes.