Protonation of Unsaturated Hydrocarbon Ligands: Regioselectivity,Stereoselectivity, and Product Specificity

Understanding the mechanisms of protonation of hydrocarbon ligands is fundamental to a wide range of chemistry including organic synthesis, organometallic chemistry, and even bioinorganic chemistry. Protonation at carbon or metal sites is often slow, with the result that in species containing both types of sites, initial protonation can be at either the metal or the carbon. This has fundamental consequences on the reactivity of hydrocarbon ligands, which are highlighted in this article. In particular, many reactions are apparently the result of a regioselective protonation on the basis of structural analysis of the isolated products. In fact, these products are often formed by an indirect route involving kinetically controlled protonation at the “wrong” site followed by rearrangement to form the thermodynamically controlled, apparently regioselective, product. Other aspects of the protonation mechanisms of complexes containing hydrocarbon ligands are discussed, with an emphasis on the manner in which competitive protonation at metal or ligand can be exploited to select which hydrocarbon is produced and to control the stereochemistry of the hydrocarbon.     

Physical Characterization of Acid-Doped Polyaniline

Polyaniline has been synthesized by the chemical and electrochemical oxidation of aniline. The conductivities increase by seven order of magnitude upon protonation. The IR absorption band near 1590 cm^?1 shifts to a lower frequency upon protonation. Visible spectra vary with the degree of protonation and the applied potential. Cyclic voltammetry indicates that polyaniline exists in several forms.     

Carbon protonation of 2,4,6-triaminopyrimidines: synthesis, NMR studies, and theoretical calculations

Several C5-substituted 2,4,6-triaminopyrimidine derivatives and their HBF4 salts were synthesized to study the carbon protonation of the pyrimidine ring. NMR investigations in DMSO-d6 prove experimentally that, in addition to the usual protonation at N1, the compounds can be protonated at C5 as well. We present several new stable cationic sigma-complexes in the pyrimidine series, where C5 protonation predominates over N1 protonation. Quantum chemical calculations using the B3LYP/cc-pVDZ method were utilized in the gas phase and also in DMSO solvent with the polarized continuum model (PCM) method to rationalize the observed protonation behavior. Results of the calculations accord with the experimental observations and prove that combined steric and electronic effects are responsible for the observed C5 protonation and for sigma-complex stability. We demonstrate that C5 protonation is a general feature of the 2,4,6-triaminopyrimidine system.     

氨基酸质子化反应的滴定量热测定

在298．2K和0．1mol•dm－3（KNO3）离子强度的实验条件下，用常规滴定量热法测定了八种氨基酸羧基质子化反应的平衡常数和反应焓变；用扩展的滴定量热法测定了这些氨基酸氨基质子化反应的平衡常数和反应焓变；并讨论了各热力学性质之间的关系．     

Protonation behavior of 6-deoxy-6-(2-aminoethyl)amino cellulose: a potentiometric titration study

The protonation behavior of 6-deoxy-6-(2-aminoethyl)amino cellulose as a novel soluble aminated derivate of cellulose was studied by means of the potentiometric titration technique. The resulting proton binding isotherms exhibit two equivalent steps, which can be described by the standard macroscopic two-pK model, in which the degree of protonation is averaged over all the amine groups. In addition, a microscopic proton binding model was applied, in which the protonation sites are distinguished and the protonation free energy is expanded into an intrinsic term and an electrostatic repulsion between the primary and secondary amine groups. The protonation behavior of 6-deoxy-6-(2-aminoethyl)amino cellulose was compared with a model compound (N-methylethylenediamine).     

Ionic strength dependence of formation constants-V Protonation constants of some nitrogen-containing ligands at different temperatures and ionic strengths

The protonation constants of 2,2'-bipyridyl, 1,10-phenanthroline, 1,3-diaminopropane, l-histidine and histamine have been determined potentiometrically, in the temperature range 10-40 degrees and at ionic strengths ranging from 0.04 to 1 (potassium chloride). The dependence of the protonation constants on ionic strength is described by a simple general equation. The enthalpy changes for the protonation of the ligands have been calculated from the temperature dependence of the protonation constants.     

Spectrophotometric determination of the protolytic dissociation constants of the new chromogenic reagent "PALLADIAZO"-II Study of the protonation processequals, single dot aboves undergone by the azo-groups of the reagent in sulphuric acid media

The protonation of the reagent 1,8-dihydroxynaphthalene-3,6-disulphonic-2,7-bis(azophenyl-p-arsonic) acid ("palladiazo") has been investigated by a spectrophotometric method in 0.25-18M sulphuric acid media. Graphical assessment of the experimental results points to the protonation of only one azo-group, although a two-stage protonation process cannot be conclusively ruled out at very high acidity. The first protonation instability constant is pK(9) = -(2.4 +/- 0.1) and the second is tentatively estimated as -7.4. Most of the current views on the complexation and protonation reactions of bis(azophenyl)chromotropic acid derivatives.with metal cations and protons are reviewed and critically discussed in some detail in order to interpret the experimental findings. It is concluded that the fully protonated palladiazo molecule exists in very concentrated acid media predominantly in the form of a symmetrical positively charged tautomeric quinonehydrazone proton complex species which is responsible for the appearance of a very strong single absorption band with a maximum at 665 run which gives the protonated reagent solutions a characteristic deep-emerald-green colour.     

The mechanism of the protonation of metal (hydr)oxides in aqueous solutions studied for various interfacial/surface ionization models and physicochemical parameters: a critical review and a novel approach

The mechanism of the protonation of solid metal (hydr)oxides in aqueous media was investigated using simulation and experimental work. It was found that the apparent acidity/basicity of each kind of surface sites of metal (hydr)oxides in aqueous suspensions is strongly influenced by the overall surface charge of the (hydr)oxide and thus by the electrical potential smeared out at the interfacial region. Depending on its sign this increases or decreases the hydrogen ion concentration on the surface, thus promoting or hindering protonation. This is manifested by the shifts of the protonation peaks of the various kinds of sites with respect to the -pK values of the corresponding intrinsic protonation constants and the appearance of an extra peak in the d[H+cons,surf]/dpH vs. pH curves. Potentiometric titrations experiments performed for four technologically important oxides showed that the proposed protonation mechanism describes indeed the protonation of polycrystalline (hydr)oxides in aqueous media.     

Structural and energetic aspects of the protonation of phenol,catechol, resorcinol,and hydroquinone

The various protonated forms of phenol (1), catechol (2), resorcinol (3), and hydroquinone (4) were explored by ab initio quantum chemical calculations at the MP2/6-31G(d) and B3LYP/6-31G(d) levels. Proton affinities (PA) of 1-4 were calculated by the combined G2(MP2,SVP) method, and their gas-phase basicities were estimated after calculation of the change in entropy on protonation. These theoretical data were compared with the corresponding experimental values determined in a high-pressure mass spectrometer. This comparison confirmed that phenols are essentially carbon bases and that protonation generally occurs in a position para to the hydroxyl group. Resorcinol is the most effective base (PA = 856 kJ mol-1) due to the participation of both oxygen atoms in the stabilization of the protonated form. Since protonation is accompanied by a freezing of the two internal rotations, a significant decrease in entropy is observed. The basicity of catechol (PA = 823 kJ mol-1) is due to the existence of an intramolecular hydrogen bond, which is strengthened upon protonation. The lower basicity of hydroquinone (PA = 808 kJ mol-1) is a consequence of the fact that protonation necessarily occurs in a position ortho to the hydroxyl group. When the previously published data are reconsidered and a corrected protonation entropy is used, a proton affinity value of 820 kJ mol-1 is obtained for phenol.     

Theoretical analysis of pyridine protonation in water clusters of increasing size.

The protonation of pyridine in water clusters as a function of the number of water molecules was theoretically analyzed as a prototypical case for the protonation of organic bases. We determined the variation of structural, bonding, and energetic properties on protonation, as well as the stabilization of the ionic species formed. Thus, we used supermolecular models in which pyridine interacts with clusters of up to five water molecules. For each complex, we determined the most stable unprotonated and protonated structures from a simulated annealing at the semi ab initio level. The structures were optimized at the B3LYP/cc-pVDZ level. We found that the hydroxyl group formed on protonation of pyridine abstracts a proton from the ortho-carbon atom of the pyridine ring. The "atoms in molecules" theory showed that this C-H group loses its covalent character. However, starting with clusters of four water molecules, the C-H bond recovers its covalent nature. This effect is associated with the presence of more than one ring between the water molecules and pyridine. These rings stabilize, by delocalization, the negative charge on the hydroxyl oxygen atom. Considering the protonation energy, we find that the protonated forms are increasingly stabilized with increasing size of the water cluster. When zero-point energy is included, the variation follows closely an exponential decrease with increasing number of water molecules. Analysis of the vibrational modes for the strongest bands in the IR spectra of the complexes suggests that the protonation of pyridine occurs by concerted proton transfers among the different water rings in the structure. Symmetric water stretching was found to be responsible for hydrogen transfer from the water molecule to the pyridine nitrogen atom.     

Protonation sites of isolated fluorobenzene revealed by IR spectroscopy in the fingerprint range

Protonated fluorobenzene ions (C6H6F+) are produced by chemical ionization of C6H5F in the cell of a FT-ICR mass spectrometer using either CH5+ or C2H5+. The resulting protonation sites are probed by IR multiphoton dissociation (IRMPD) spectroscopy in the 600-1700 cm-1 fingerprint range employing the free electron laser at CLIO (Centre Laser Infrarouge Orsay). Comparison with quantum chemical calculations reveals that the IRMPD spectra are consistent with protonation in para and/or ortho position, which are the thermodynamically favored protonation sites. The lack of observation of protonation at the F substituent, when CH5+ is used as protonating agent, is attributed to the low-pressure conditions in the ICR cell where the ions are produced. Comparison of the C6H6F+ spectrum with IR spectra of C6H5F and C6H7+ reveals the effects of both protonation and H F substitution on the structural properties of these fundamental aromatic molecules.     

Protonation States of Glufosinate in Aqueous Solution

Glufosinate, an analogue of glutamic acid (also known as phosphinothricin), is an important herbicide. The protonation constants of glufosinate were determined by means of potentiometric titrations at variable temperatures with ionic strength 0.5 mol·L^?1 (NaCl solution). The heat effects of the protonation reactions of glufosinate were measured by direct calorimetry. NMR spectroscopies have demonstrated that the first protonation site occurs on the nitrogen atom in the amino group, followed by one of the oxygen atoms in the phosphono group, and finally the carboxyl oxygen atom. This trend is in good agreement with the enthalpy of protonation and crystal structure results. These data will help to predict the speciation of glufosinate in physiological systems.     

Influence of protonation on physico-chemical properties of metal extractants

Summary The protonation constants of several metal extractants, especially hydroxamic acids have been determined by a solvent extraction method. The influence of the acidity on the solubility and the distribution ratio has been studied. A plot correlates the protonation behaviour of these metal extractants with the Hammett Acidity Function, H_o. The protonation constant is useful to explain the acid catalysed hydrolysis rate of these metal extractants and to determine the extraction coefficients of their metal chelates.     

Highly non-planar dendritic porphyrin for pH sensing: observation of porphyrin monocation

Metal-free porphyrin-dendrimers provide a convenient platform for the construction of membrane-impermeable ratiometric probes for pH measurements in compartmentalized biological systems. In all previously reported molecules, electrostatic stabilization (shielding) of the core porphyrin by peripheral negative charges (carboxylates) was required to shift the intrinsically low porphyrin protonation pK(a)'s into the physiological pH range (pH 6-8). However, binding of metal cations (e.g., K(+), Na(+), Ca(2+), Mg(2+)) by the carboxylate groups on the dendrimer could affect the protonation behavior of such probes in biological environments. Here we present a dendritic pH nanoprobe based on a highly non-planar tetraaryltetracyclohexenoporphyrin (Ar(4)TCHP), whose intrinsic protonation pK(a)'s are significantly higher than those of regular tetraarylporphyrins, thereby eliminating the need for electrostatic core shielding. The porphyrin was modified with eight Newkome-type dendrons and PEGylated at the periphery, rendering a neutral water-soluble probe (TCHpH), suitable for measurements in the physiological pH range. The protonation of TCHpH could be followed by absorption (e.g., ε(Soret)(dication)～270,000 M(-1) cm(-1)) or by fluorescence. Unlike most tetraarylporphyrins, TCHpH is protonated in two distinct steps (pK(a)'s 7.8 and 6.0). In the region between the pK(a)'s, an intermediate species with a well-defined spectroscopic signature, presumably a TCHpH monocation, could be observed in the mixture. The performance of TCHpH was evaluated by pH gradient measurements in large unilamellar vesicles. The probe was retained inside the vesicles and did not pass through and/or interact with vesicle membranes, proving useful for quantification of proton transport across phospholipid bilayers. To interpret the protonation behavior of TCHpH we developed a model relating structural changes on the porphyrin macrocycle upon protonation to its basicity. The model was validated by density functional theory (DFT) calculations performed on a planar and non-planar porphyrin, making it possible to rationalize higher protonation pK(a)'s of non-planar porphyrins as well as the easier observation of their monocations.     

The gas phase structure of some protonated and ethylated aromatic amines

The fundamental processes of protonation and ethylation, occurring in a methane chemical ionization source, have been investigated for a variety of aromatic amines. The positions of protonation and ethylation on the substrate amines were determined by generating isomeric ions either by protonation of neutral ethyl substituted amines or by ethylation of the amines themselves. The product ions were investigated for structural differences via collision induced dissociation and subsequent analysis via mass analysed ion kinetic energy spectrometry. Similarities and differences between mass analysed ion kinetic energy/collision induced dissociation spectra of these isomeric ions were used to determine protonation and ethylation sites for imidazole, benzimidazole, indazole, pyrrole, pyridine and aniline.     

Electro-organic reactions : Part 34. Kinetic basicities of some electrogenerated organic dianions and the competition between protonation and reproportionation

Convenient and reliable double potential step chronamperometry methods are described for measurement of the rates of protonation of 9-fluorenylidene dianions by carbon acids. The rates of protonation are shown to be insensitive to competing base-catalysed enolisation of the carbon acid. Comparison of experimental i-t transients with those simulated for plausible mechanisms shows that although the measured protonation rate constants are affected by allowing for rapid reproportionation, they are all affected in a similar manner. In contrast, ion-pairing or complexation effects are significant; protonation rate differences caused by varying cation: dianion interactions have been measured and explained. For the dianion of diethyl(4,5-diazafluoren-9-ylidene)malonate a 1:2 complex is formed with Na⁺ and its formation constant in DMSO has been measured as 1.7 × 10⁸.     

Protonation of a histidine copper ligand in fern plastocyanin

Plastocyanin is a small blue copper protein that shuttles electrons as part of the photosynthetic redox chain. Its redox behavior is changed at low pH as a result of protonation of the solvent-exposed copper-coordinating histidine. Protonation and subsequent redox inactivation could have a role in the down regulation of photosynthesis. As opposed to plastocyanin from other sources, in fern plastocyanin His90 protonation at low pH has been reported not to occur. Two possible reasons for that have been proposed: pi-pi stacking between Phe12 and His90 and lack of a hydrogen bond with the backbone oxygen of Gly36. We have produced this fern plastocyanin recombinantly and examined the properties of wild-type protein and mutants Phe12Leu, Gly36Pro, and the double mutant with NMR spectroscopy, X-ray crystallography, and cyclic voltammetry. The results demonstrate that, contrary to earlier reports, protonation of His90 in the wild-type protein does occur in solution with a pKa of 4.4 (+/-0.1). Neither the single mutants nor the double mutant exhibit a change in protonation behavior, indicating that the suggested interactions have no influence. The crystal structure at low pH of the Gly36Pro variant does not show His90 protonation, similar to what was found for the wild-type protein. The structure suggests that movement of the imidazole ring is hindered by crystal contacts. This study illustrates a significant difference between results obtained in solution by NMR and by crystallography.     

Geometry,basis set,and correlation energy dependence of computed protonation energies of imino bases

The nitrogen protonation energies of the imino bases HN?CHR, where R is H, CH₃, NH₂, OH, and F, have been evaluated to determine the dependence of absolute and relative protonation energies on geometry, basis set, and correlation effects. Reliable absolute protonation energies require a basis set larger than a split-valence plus polarization basis, the inclusion of correlation, and optimized geometries of at least Hartree–Fock 4-31G quality. Consistent relative protonation energies can be obtained at the Hartree–Fock level with smaller basis sets. Extending the split-valence basis set by the addition of polarization functions on all atoms decreases the computed absolute Hartree–Fock nitrogen protonation energies of the imino bases HN?CHR except when R is F, but increases the oxygen protonation energies of the carbonyl bases O?CHR.     

The protonation of polyacrylate in seawater. Analysis of concentration effects

The protonation of polyacrylate (PAA, MW 2 kDa) was studied potentiometrically at 25 degrees C, in mixed electrolyte aqueous solution simulating the composition of seawater, in the salinity range 30 < or = S < or = 40. The salt composition of different solutions was varied in order to study its effect on apparent protonation constants. Results were analysed using two fairly different approaches: by simple regression analysis on a combination of concentration parameters and salinity, and by canonical correlation analysis. Unexpectedly we found that variations on protonation constants, due to the different relative component concentrations, are fairly low, revealing a sort of buffering capacity of seawater respect to protonation properties of polyacrylate (and likely for other HMW and LMW polycarboxylates). The intrinsic protonation constant of polyacrylate 2 kDa at 25 degrees C and 35 salinity is log K(H*) = log K(int) = 4.399 +/- 0.004. The use of different pH scales and standard seawater compositions is also discussed.     

Chiral Primary‐Amine‐Catalyzed Conjugate Addition to α‐Substituted Vinyl Ketones/Aldehydes: Divergent Stereocontrol Modes on Enamine Protonation

Enantioselective protonation with a catalytic enamine intermediate represents a challenging, yet fundamentally important process for the synthesis of α‐chiral carbonyls. We describe herein chiral primary‐amine‐catalyzed conjugate additions of indoles to both α‐substituted acroleins and vinyl ketones. These reactions feature enamine protonation as the stereogenic step. A simple primary–tertiary vicinal diamine 1 with trifluoromethanesulfonic acid (TfOH) was found to enable both of the reactions of acroleins and vinyl ketones with good activity and high enantioselectivity. Detailed mechanistic studies reveal that these reactions are rate‐limiting in iminium formation and they all involve a uniform H₂O/acid‐bridged proton transfer in the stereogenic steps but divergent stereocontrol modes for the protonation stereoselectivity. For the reactions of α‐branched acroleins, facial selections on H₂O‐bridged protonation determine the enantioselectivity, which is enhanced by an OH???π interaction with indole as uncovered by DFT calculations. On the other hand, the stereoselectivity of the reactions with vinyl ketones is controlled according to the Curtin–Hammett principle in the C? C bond‐formation step, which precedes a highly stereospecific enamine protonation.