Studies of systemic acylanilide fungicides. Part IV. Crystal structure and molecular conformation ofN-(2-methoxyacetyl)-N-(2,6-xylyl)-α-amino-γ-butyrolactone

The crystal structure of the title compound (C₁₅H₁₉NO₄, MW 277.3 amu) was determined by three-dimensional X-ray analysis from diffractometer data. Crystal data are: monoclinic,P2₁/n,a=9.600(3) Å,b=11.964(6) Å,c=12.802(4) Å,=101.25(3)°,V=1442.1(16) ų,Z=4;D _x =1.277 Mg m^–3;(MoK)=0.10 mm^–1. FinalR=0.055 for 1686 observed reflections having 2 (MoK)<50° andI>2.5 (I). The compound is isostructural withN-(2-methoxyacetyl)-N-(2,6-xylyl)-3-amino-1,3-oxazolidin-2-one. The dimethylphenyl ring is almost perpendicular to the amidic plane of the molecule (dihedral angle 81.9°); the butyrolactone ring is in the typical envelope conformation.     

Crystal structures of (I) 2-(9,9-dipropylfluorene-2-yl)-9,9- dipropylfluorene and (II) 2-(1,1-dimethylpropyl)-7- {4-[(1,1-dimethylpropyl)-9,9-diethylfluoren-2-yl]phenyl}-9,9-diethylfluorene and (III) 2-(4-ethylphenyl) -7-[7-(ethylphenyl)-9,9-dipropylfluoren-2-yl]-9,9-dipropylfluorene

The crystal structures of the three fluorene related molecules, (I) 2-(9,9-dipropylfluorene-2-yl)-9,9-dipropylfluorene, [Exalite 384, C₃₈H₄₂], (II) 2-(1,1-dimethylpropyl)-7-{4-[(1,1-dimethylpropyl)-9,9-diethylfluoren-2-yl] phenyl}-9,9-diethylfluorene, [Exalite 404, C₅₀ H₅₈], and (III) 2-(4-ethylphenyl)-7-[7-(ethylphenyl)-9,9-dipropylfluoren-2-yl]-9,9-dipropylfluorene, [Exalite 416, C₅₄H₅₈], have been determined. Structural details reveal a novel new bonding arrangement at the C2 atoms of symmetry-related fluorene moieties in all three molecules producing a linear type array with an inversion center connecting adjacent asymmetric units within each molecule. Exalite 384 is monoclinic, space group P2₁/c with a = 9.002(2) Å, b = 16.275(4) Å, c = 10.525(1) Å, = 103.05(1), and V = 1502.1(5) ų with Z = 4, for d _calc = 1.103 g/cm³. Exalite 404 is triclinic, space group P1 with a = 10.383(1) Å, b = 13.404(2) Å, c = 7.7007(9) Å, = 105.296(9), = 104.23(1), = 73.707(9), and V = 974.9(2) ų with Z = 2, for d _calc = 1.141. Exalite 416 is monoclinic, space group P2₁/c with a = 15.99(10) Å, b = 11.178(8) Å, c = 23.766(4) Å, = 104.21(4), and V = 4117(4) ų with Z = 4, for d _calc = 1.141 g/cm³.     

Crystal and molecular structure of: 5-(1-oxoethyl)-1-methyl-2-(5-bromo-6-methoxy-2-naphthyl)-6-oxabicyclo[3.2.1]octan-7-one and 5-(1-oxoethyl)-1-methyl-2-(5-bromo-6-methoxy-2-naphthyl)-6-oxabicyclo[3.2.1]octane

X-ray crystallographic studies of the two title compounds have shown that the molecules crystallize in the same triclinic space group, , with very similar cell dimensions. For C₂₁H₂₁BrO₄,a=12.056(5),b=13.206(5),c=7.595(3)Å, =90.38(3), =106.07(3) and =124.42(3)° and for C₂₁H₂₃BrO₃,a=12.076(6),b=13.090(5),c=7.490(3)Å, =92.65(5), =104.90(5) and =124.55(5)°. Both compounds possess the oxabicyclo[3.2.1]octane bridged ring system and differ only at the carbon to the ring oxygen where the Csp³ in the ether is replaced by Csp²=O in the lactone. Both cyclohexane rings adopt distorted chair conformations and the lactone and ether rings approximate closely to the envelope conformation. The bromine substituent at C(4) results in distortion of the naphthalene ring. Both molecules pack with the naphthalene rings parallel to each other with interplanar spacings of 3.71 Å in the ether and 3.66Å in the lactone.     

The crystal structure of 5-methyl-1-(octahydro-1-iodo-1H-1-inden-4-yl)-1H-tetrazole

The title compound is C₁₁H₁₇N₄I, F.W.=330.20, monoclinic, space groupP2₁/a,a=11.586(2),b=10.617(1),c=10.417(1) Å, =94.567(2)°,Z=4,F(000)=652, (MoK)=0.7107 Å, (MoK)=2.31 mm^–1,V=1277.31 Å₃,D _C=1.71 gcm^–3,D _m=1.70 gcm^–3. The structurewassolved by Patterson and Fourier methods and refined to anR value 0.031 for 1620 observed reflections. The connectivity and conformation of the addition product ofcis-1,5-cyclononadiene and iodine azide was determined by X-ray analysis. The reaction product contains a chair-conformation cyclohexane ring that iscis fused to a cyclopentane ring. The cyclopentane ring has an envelope conformation and an equatorially oriented iodine substituent. A planar tetrazole ring is axially substituted on the cyclohexane ring. The plane of the tetrazole ring makes a dihedral angle of 69.6° with the average plane of the carbon atoms of the cyclohexane ring.     

Crystal structure of 4,6-dinitro-1-(5-tetrazolyl)-1H-indazole trihydrate

The title compound, C₈H₄N₈O₄·3H₂O, crystallizes in space groupP¯1 with cell constantsa=7.022(1),b=9.507(2),c=10.906(2) Å,=84.99(1),=71.89(1),=72.56(1)°,Z=2, andV _c =660.2 ų. The structure was solved by direct methods using diffractometer data and was refined by full-matrix least-squares methods to anR value of 0.060 for 2112 observed reflections. The molecule, consisting of a phenyl ring fused to a pyrazole ring with a tetrazole ring connected to it equatorially, is planar except for the N(7) nitro-group oxygen atoms. The structure is stabilized by a three-dimensional network of O-HO, O-HN, and N-HO hydrogen bonds through the water molecules.     

Crystal structure and spectroscopic study of 4-(N-acetyl) cysteinyl-6,7-dimethoxy-2,2-dimethyl-3-hydroxybenzo-1H-pyran,a potential metabolite of glutathione conjugation of precocene II 3,4-epoxide

The X-ray crystal structure of the title compound has been determined. The crystals are monoclinic:P2₁/a, a=9.804(7),b=20.544(4),c=13.288(3) Å,=105.94(4)°,V _c=2561.9 ų,Z=4,D _x=1.39Mg m^–3, (MoK)=0.71069 Å. The structure was solved by direct methods and refined with 2147 reflections to a finalR value of 0.072. The 1h-pyran ring departs from ideal symmetry towards a half-chair conformation. Mass, IR, and¹H NMR spectra are also reported.     

Structures of 8α-(2′-methylbutyryloxy)-9α-hydroxymontahibisciolide,a new skeletal type of sesquiterpene lactone,and of its precursor 8α-isobutyryloxy-9-oxo-germacra-4E, 1(10)Z-dien-6β,12-olide

The structures of a new skeletal type of sesquiterpene lactone, containing a seven, five, fivering system, and of its putative precursor, a 9-oxo-melampolide, have been confirmed by single crystal X-ray structure determination. The central 5-membered ring of the new skeleton istrans-fused to the cycloheptene ring andcis-fused to the lactone ring. Transannular interactions and the geometry of thetrans carbon-carbon double bond of the oxo-melampolide and the keto-group at C9, suggest that the new seven, five, five tricyclic skeleton-type of montahibisciolide can easily be reached by a transannular cyclization process. The isobutyrloxy group of the oxo-melampolide is disordered into two partially populated conformations. 8-(2-Methylbutyryloxy)-9-hydroxymontahibisciolide,3, C₂₀H₂₈O₅, crystallizes in orthorhombic space groupP2₁2₁2₁ witha=8.294(2),b=9.740(2),c=22.675(1) Å,V=1832(1)ų,Z=4. The structure was refined toR=0.043 andR _w=0.048 for 2898 observed reflections with CuK radiation. 8-isobutyryloxy-9-oxo-germacra-4E, 1(10)Z-dien-6, 12-olide,4, C₁₉H₂₄O₅, crystallizes in monoclinic space groupC2 witha=32.879(7),b=5.793(2),c=9.884(4)Å, =99.01(3)°,V=1859.5(9)å³,Z=4. The structure was refined toR=0.054 andR _w=0.064 for 1010 observed reflections with MoK radiation.     

Crystal structure of racemic 5-(p-nitrobenzoylamino)-5-methyl-4-oxo-1,3-dioxane

C₁₂H₁₂N₂O₆ crystallized from methanol in the monoclinic space group P2₁/c (Z=4) witha=13.333(4),b=10.154(3),c=9.597(2) Å and=102.37(2)°.M _r=280.24,V=1269.1(6) ų,D _x=1.466 g cm^–3,(Mo K)=0.71069 Å,=1.29 cm^–1,T=295 K. The structure was solved by direct methods and refined by full-matrix least-squares to a finalR (R _w)=0.049 (0.057) for 916 observed reflections. The molecules are linked by strong N-HO(4) hydrogen bonds with NO distance of 2.995(4) Å. The infinite racemic chains run in [001] direction.     

Preparation,spectral studies,and X-ray crystal structures of (16S, 17R, 20S)-3-oxo-16-hydroxy-25-nor-lanostan-24-oic lactone (II) and (16S, 17R, 20S)-4,16-dihydroxy-25-nor-3,4-seco-lanostan-3,24-dioic acid dilactone (III)

The crystal and molecular structures of the title compounds have been determined by direct methods, and refined to a finalR of 0.059 forII and 0.046 forIII. Both molecules crystallize in space group P2₁2₁2₁. The cell dimensions forII area=10.096(5),b=11.255(3),c=20.300(7) Å;Z=4,D _x=1.188 g cm^–3, (MoK)=0.70 cm^–1, while the cell dimensions forIII area=7.346(1),b=10.470(3),c=30.546(5) Å;Z=4,D _x=1.212 g cm^–3, (MoK)=0.74 cm^–1. The rings of the triterpene skeletons aretrans-cis-trans-cis connected. The conformations of both molecules are discussed. Also the preparation and the spectral data of (17R, 20S)-3,16-dioxo-25-nor-lanostan-24-oic acid (V) and (17R, 20S)-3,16,24-trioxo-25-hydroxy-16,24-seco-lanostan-25-acetate (VI) are given.     

4- and 5-nitroindane

Mononitration of indane produces a mixture of 4- and 5- nitroindanes. Crystallization from mixtures occurs after distillation improves composition of a major component to above 80%. 4-Nitroindane: triclinic, space group (#2),a=7.332(4) Å,b=8.304(4) Å,c=8.358(4) Å, =61.43(4)°, =67.60(4)°, =70.15(4)°,V=405.4(4) ų,Z=2. Non-H-atoms are nearly planar, aliphatic H's are eclipsed. 5-Nitroindane: monoclinic, space groupP2₁/c (#14),a=10.946(8) Å,b=15.643(10) Å,c=9.415(6) Å, =92.34(5)°,V=1611(2) ų,Z=8. Non-H-atoms in the two molecules differ in torsion of the nitro group with respect to indane and fold of the nonbenzylic methylene group. Semiempirical calculations (PM3) suggest that distorsion from planarity may be associated with the two lowest energy vibrational modes. Uv, ir, ms, proton, and¹³C-nmr spectra are correlated with the solid state structures.     

Crystal and molecular structure of rac (1R,5R,6S,7R)-1-oxy-7-benzoyl-5-methyl-8-azabicyclo-[4.3.0]-nonane-4,9-dione, C16H17NO4 (perhydroisoindole)

The structure of the title compound (perhydroisoindole) was determined by X-rays, using CuK radiation (graphite-crystal monochromator, =1.54184 Å):T=290 K, C₁₆H₁₇NO₄,M _r =287.31, orthorhombic, space groupPbcn,a=18.732(1),b=10.663(1),c=14.074(1) 0A,V _c =2811.2 ų,Z=8,D _x =1.361 Mg m^–3 and (CuK)=8.19 cm^–1. The final conventionalR-factor=0.036, (R _w =0.046) for 1951 unique reflections and 241 variables. The structure was solved usingMultan. The six-membered ring of the molecule is in the chair configuration. The molecules are connected by hydrogen bonds.     

Synthesis and X-ray analysis of 1-((1S)-phenylethyl)-azetidine-(2R)-piperidinamide

The crystal and molecular structure of a new azetidine-2-carboxylic amide derivative is described. The structure was solved by direct methods and refined by least squares methods toR1=0.0393 for 4264 reflections (withI>2(I)) The structure consists of two independent molecules which are chemically the same with slight differences in geometry. Crystal data: C₁₇H₂₄N₂O, monoclinic, space groupP2₁,a=8.3782(4),b=20.0342(13),c=9.7769(8) Å, =109.687(6)°,V=1545.1(2)ų,Z=4.     

X-ray crystal structures ofcis-bis(diphenylphosphinamide)tetracarbonylmolybdenum(0) andtrans-bis(N-methyl diphenylphosphinamide)tetracarbonylmolybdenum(0)

The X-ray crystal structures ofcis-Mo(CO)₄(Ph₂PNH₂)₂,I, andtrans-Mo(CO)₄(Ph₂PNHMe)₂,II, are presented. ComplexI crystallizes in the monoclinic space groupP2₁/c(a=13.433(1),b=12.2719(8),c=17.318(2)Å;=109.79(1)°;V=2686.1(8)ų;Z=4). ComplexII crystallizes in the triclinic space groupP¯1 (a=6.9986(8),b=10.328(1),c=11.241(2)Å,=107.58(1)°,=91.76(1)°, =101.28(1)°,V=756.1(4)ų,Z=1). The molybdenum coordination geometry in each complex is a slightly distorted octahedron. The molybdenum-carbon bond lengths for the carbonyls trans to phosphorus in complexI are shorter than those the carbonyls trans to other carbonyls. The average molybdenum-phosphorus distance inI (2.525(5)Å) is similar to those in other diphenylphosphinamide complexes and longer than the molybdenum-phosphorus distance inII in 2.4585(7)Å). The distance between two nitrogen atoms incis Mo(CO)₄(Ph₂PNH₂)₂ (3.74(3)Å) is significantly larger than the sum of their van der Waals radii (3.10 Å) indicating that the two nitrogens are not hydrogen bonded.     

Conformational study on aryl ketones: The structure of 2,6-dimethyl-1,5-di-(2-methyl)-propanoylnaphthalene

C₂₀H₂₄O₂ (M _r =296.4) crystallizes in the monoclinic system, space groupC2/c witha=24.154(4),b=8.001(2),c=12.751(3) Å;=136.8(1)°;V=1686.9 ų,Z=4,D _c =1.17 g cm^–3,(Cu-)=5.4 cm^–1,=1.5418 Å,F(000)=640. The molecule in the solid state adopts a centrosymmetric geometry with the molecular center of symmetry coincident with a crystallographic center of symmetry. This fact forces the molecule to themeso conformation.     

Crystal structures of two azo compounds, 2-methyl-2-(4-bromphenylazo)-1,3-indandione and 2-methyl-2-(4-ethoxyphenylazo)-1,3-indandione

In the two title compounds, the 2-methyl-1,3-dioxoindan-2-yl and 4-(brom; ethoxy) phenyl groups aretrans with respect to one another. The phenyl ring and the azo group are not coplanar in the two molecules. The five-membered rings of the two compounds adopt an envelope conformation. The crystallographic parameters are as follows: 2-Methyl-2-(4-bromphenylazo)-1,3-indandione (I): monoclinic, P2₁/a witha=8.098(2),b=14.442(2),c=12.554(1)Å, =100.55(2)^o, andD _calc=1.58 g cm^–3 forZ=4; 2-methyl-2-(4-ethoxyphenylazo)-1, 3-indandione (II): monoclinic, P2₁/a witha=8.258(2),b=14.449(1),c=13.559(2)Å, =101.19(1)^o, andD _calc=1.29 g cm^–3 forZ=4.     

Crystal structure of a nucleoside analog: 1-(R)-[6-(R)-hydroxymethyl-1,4-dioxan-2-yl] uracil

The title compound (C₉H₁₂N₂O₅,M _r =228.2) crystallizes in the trigonal space groupP3₁,21 witha=b=9.438(3) andc=19.775(3) Å,V=1525.5 ų,D _x =1.490 gm cm^–3,Z=6,=0.12 mm^–1,F(000)=720.0,T=293 K. The structure was solved by direct methods and refined by full-matrix least-squares calculations to anR value of 0.044 on 843 unique observed reflections. The dioxane ring adopts a chair conformation. The crystal structure is stabilized by N-HO hydrogen bonds and C-HO close contacts.     

Crystal structure of DMAP-C-HMTCAQ,C30H20N6O2, N,N-dimethylaminophenyl-carbamate-2′-hydroxymethyl-11,11,12,12-tetracyano-anthraquinodimethan

C₃₀H₂₀N₆O₂,M _r =496.53, triclinic, P¯1,a=8.748(4) Å,b=10.989(3) Å,c=13.541(8) Å,=90.67(4)°,=99.15(4)°, =98.62(4)°,V=1269.8 ų,Z=2,D _c =1.30 g cm^–3, (Mo K)=0.71069 Å,=1.02 cm^–1,F(000)=516.0,T=295(3) K,R=0.127% for 1839 observed reflections, 363 parameters. The molecule has an extended, rather than a folded geometry. The HMTCAQ moiety has mm symmetry, and is shaped like a hawk about to land. The anthraquinone ring system is folded, with a dihedral angle of 37.3°; the two propanedinitrile groups have a mutual dihedral angle of 80.2°. The dihedral angle between the central ring of the TCAQ moiety and the phenyl ring is 37.2°. The phenyl rings stack over each other with a perpendicular distance of 3.36 Å. The dipole moment of the molecule is 6.254 Debyes; the crystal Madelung energy isE _M=–8.989 kJ/mol; the dispersion energy isE _d =–318.370 kJ/mol; the repulsion energy isE _r =130.139 kJ/mol.On leave at Department of Chemistry, University of Alabama, Tuscaloosa, Ala. 35487-9671.     

Crystal structures of anhydro-bases of 1- and 2-(ethoxycarbonylmethylo)-4-hydroxycinnolinium hydroxides

C₁₂H₁₂N₂O₃,M _r=232.24. (1): C2/c,Z=8,a=14.658(1),b=4.9375(4),c=31.859(4) Å, =91.710(6)°. (2): P2₁/c,Z=4,a=11.422(2),b=4.8864(2),c=21.176(3)Å, =103.29(3)°. The study confirms significant contribution of quinoid diazine ring form in anhydrobase of 1-substituted 4-hydroxycinnolinium hydroxides. The phenomenon corresponds with a negative net charge at formerly positively charged N(1) atom, with fewer hydrogen contacts of less negatively charged O(4) and with increased stacking in 1-substituted derivative, in comparison with 2-substituted structure.     

Crystal and molecular structure of 2-(p-tolyl)-2-dehydrosparteine

The formula of the title compound is C₂₂H₃₀N₂,M _T =322.5; monoclinic:P2₁,a=7.569(3),b=9.381(1),c=13.684(4) Å,=105.81(2)°,Z=2,V _c =933.7 ų,D _x =1.15 g cm^–3,(CuK)=5.1 cm^–1. The sparteine skeleton (bis-quinolizidine system) has atrans-trans configuration. RingA has an intermediate form between the sofa and half-chair conformations, ringsB andD-chair, and ringC-boat conformations, respectively. The double bond C(2)=C(3) is equal to 1.343(9) Å. The phenyl ring is planar and makes an angle with a plane through N(1), C(2), C(3), and C(4) atoms equal to 43.9°.     

Crystal structures of bis-11-aminoundecanoic chlorocuprate and bis-11-aminoundecanoic-Cu(II) sulfate trihydrate

Bis-11-aminoundecanoic chlorocuprate: (I),M _r =609.5, triclinic,P¯1 (No. 2),a=7.237(1),b=7.536(1),c=27.605(2) Å, =97.98(8),=92.45(8), =90.02(8)°,V _c =1492 ų,Z=2,D _x =1.357 g cm^–3,D _m =1.35(1) g cm^–3 (flotation), =43.85 cm^–1, CuK radiation=1.5418 Å,F(000)=642,T=23 °C,R=0.065 for 4121 observed reflections. Bis-11-aminoun-decanoic sulfate Cu(II) trihydrate: (II),M _r =616.4, triclinic,P¯1,a=7.745(2),b=9.553(4),c=20.343(5) Å, =80.91(3),=79.28(2), =87.58(3)°,V _c =1460 ų,Z=2,D _x =1.40(1) g cm^–3,D _m =1.38(2) g cm^–3 (flotation),=8.16 cm^–1, MoK radiation=0.71069 Å,F(000)=658,T=23°C,R=0.064 for 3384 observed reflections. In (I) the two copper ions are in special positions 0, 0, 0 and 1/2, 1/2, 0 octahedrally coordinated to Cl^–. The CuCl ₂ ^2– ions make square planes with the short bonds of mean values 2.289 and 2.295 Å. The carbonyls are hydrogen bonded, and the conformation of the amino acid chains ist for whole chain except at C(11) of chainA and N of chainB where it isg. In (II) Cu²⁺ shows a very distorted octahedral coordination with a mean value of 1.959 Å for the short bonds Cu-O and 2.512 Å for the long bonds. TheB amino acid chain presents a similar conformation change at C(11) as in theA chain of complex (I).