Cadmium underpotential deposition on Cu(111) in situ scanning tunneling microscopy

Atomically resolved in situ STM images are presented for an underpotentially deposited (upd) cadmium layer on a Cu(111) electrode from a 10(-4) M CdCl2/10(-2) M HCl solution. The observed moiré-like structure seen in the images is analysed by means of an algebraic model for this long-range superstructure. A structure model for the upd layer is developed which reflects all features of the observed moiré pattern. Furthermore the height modulation was simulated by a hard-sphere model for the Cd overlayer and shows remarkable agreement with the detailed tunneling current density distribution of the measured STM images. The existence of translational and rotational domains is demonstrated. The results are also compared and shown to be fully consistent with previous (ex situ) low-energy electron diffraction (LEED) observations of this system. The mechanism of Cd upd involves a dynamic site exchange between preadsorbed Cl- anions and adsorbing Cd2+ cations as previously concluded from ex situ X-ray photoelectron (XPS) and low-energy ion scattering (LEIS) measurements.     

Adlayers of Sb irreversibly adsorbed on Pt(111): an electrochemical scanning tunneling microscopy study

This work presents an electrochemical scanning tunneling microscopy study of Sb irreversibly adsorbed on Pt(111) at various potentials. At an open circuit potential (0.46 V vs a Ag/AgCl electrode), well-ordered structures of SbO+ were found: four (4 x 3)-3SbO+ structures and one (2 square root(3) x 2 square root(3))R30 degrees-3SbO+ structure. In addition, several unidentifiable transient structures of SbO+ were observed, and their relations to the well-ordered structures of (4 x 3) and (2 square root(3) x 2 square root(3))R30 degrees, regarding structural evolution, were proposed. At a reducing potential (0 V), the Pt(111) surface was covered with irreversibly adsorbed Sb which consisted of three different domains: protruded domain, domain of uniaxially incommensurate (square root(3) x square root(2))-Sb, and domain of bare (1 x 1) Pt(111). During oxidation of elemental Sb at 0.30 V, the Sb domains of the (square root(3) x square root(2)) structure were oxidized, while the protruded domains were not oxidized. After underpotential deposition of additional Sb onto the Pt(111) covered with irreversibly adsorbed Sb, the whole surface was filled with the Sb domains where each Sb atoms were separated by the square root(2a) distance (a = one Pt-Pt distance, 0.277 nm). The observed electrochemical inactivity below 0.3 V was discussed in terms of the protruded domain of a presumable incommensurate (square root(2) x square root(2)) structure.     

Adsorption of formaldehyde on Pt(111) and Pt(100) electrodes: cyclic voltammetry and scanning tunneling microscopy

The adsorption of formaldehyde (HCHO) on Pt(111) and Pt(100) electrodes was examined by cyclic voltammetry (CV) and in situ scanning tunneling microscopy (STM) in 0.1 M HClO(4). The extent of HCHO adsorption at both Pt electrodes was evaluated by comparing the CVs, particularly for the hydrogen adsorption and desorption between 0.05 and 0.4 V, obtained in 0.1 M HClO(4) with and without HCHO. The adsorption of HCHO on these Pt electrodes was significant only when [HCHO] >/= 10 mM. Adsorbed organic intermediate species acted as poisons, blocking Pt surfaces and causing delays in the oxidation of HCHO. Compared to Pt(111), Pt(100) was more prone to poisoning, as indicated by a 200 mV positive shift of the onset of HCHO oxidation. However, Pt(100) exhibited an activity 3 times higher than that of Pt(111), as indicated by the difference in peak current density of HCHO oxidation. Molecular resolution STM revealed highly ordered structures of Pt(111)-( radical7 x radical7)R19.1 degrees and Pt(100)-( radical2 x radical2) in the potential region between 0.1 and 0.3 V. Voltammetric measurements further showed that the organic poisons produced by HCHO adsorption behaved differently from the intentionally dosed CO admolecules, which supports the assumption for the formation of HCO or COH adspecies, rather than CO, as the poison. On both Pt electrodes, HCHO oxidation commenced preferentially at step sites at the onset potential of this reaction, but it occurred uniformly at the peak potentials.     

In situ scanning tunneling microscopy of 1,6-hexanedithiol, 1,9-nonanedithiol, 1,2-benzenedithiol, and 1,3-benzenedithiol adsorbed on pt(111) electrodes

Cyclic voltammetry (CV) and in situ scanning tunneling microscopy (STM) were used to examine four dithiol molecules, including 1,6-hexanedithiol, 1,9-nonanedithiol, 1,2-benzenedithiol, and 1,3-benzenedithiol, adsorbed on well-ordered Pt(111) electrodes in 0.1 M HClO(4). The open-circuit potential (OCP) of Pt(111) electrodes decreased substantially from 0.95 to 0.3 V (versus reversible hydrogen electrode) upon the adsorption of dithol molecules, which indicates that these adsorbates injected electrons into the Pt electrode. For all dithiol molecules, ordered adlattices of p(2 x 2) and (square root 3 x square root 3)R30 degrees were formed when the dosing concentration was lower than 150 microM and the potential of Pt(111) was more negative than 0.5 V. Raising the potential of Pt(111) from 0.1 to 0.4 V or more positive values could transform p(2 x 2) to (square root 3 x square root 3)R30 degrees before it turned disarray. The insensitivity of the structure of dithiol adlayers with their chemical structures was explained by upright molecular orientation with the formation of one Pt-S bond per dithiol molecule. This molecular orientation was independent of the coverage of dithiol molecules, as nucleation seeds produced at the beginning of adsorption were also constructed with p(2 x 2). The triangular-shaped STM molecular resolution suggested 3-fold binding of sulfur headgroup on Pt(111). All dithiols were adsorbed so strongly on Pt(111) electrodes that switching the potential negatively to the onset of hydrogen evolution in 0.1 M HClO(4) or water reduction in 1 M KOH could not displace dithiol admolecules.     

In-situ scanning tunneling microscopy of carbon monoxide adsorbed on Au(111) electrode

In-situ scanning tunneling microscopy (STM) coupled with cyclic voltammetry was used to examine the adsorption of carbon monoxide (CO) molecules on an ordered Au(111) electrode in 0.1 M HClO4. Molecular resolution STM revealed the formation of several commensurate CO adlattices, but the (9 x radical 3) structure eventually prevailed with time. The CO adlayer was completely electrooxidized to CO2 at 0.9 V versus RHE in CO-free 0.1 M HClO(4), as indicated by a broad and irreversible anodic peak which appeared at this potential in a positive potential sweep from 0.05 to 1.6 V. A maximal coverage of 0.3 was estimated for CO admolecules from the amount of charge involved in this feature. Real-time in-situ STM imaging allowed direct visualization of the adsorption process of CO on Au(111) at 0.1 V, showing the lifting of (radical 3 x 22) reconstruction of Au(111) and the formation of ordered CO adlattices. The (9 x radical 3) structure observed in CO-saturated perchloric acid has a coverage of 0.28, which is approximately equal to that determined from coulometry. Switching the potential from 0.1 to -0.1 V restored the reconstructed Au(111) with no change in the (9 x radical 3)-CO adlattice. However, the reconstructed Au(111) featured a pairwise corrugation pattern with two nearest pairs separated by 74 +/- 1 A, corresponding to a 14% increase from the ideal value of 65.6 A known for the ( radical 3 x 22) reconstruction. Molecular resolution STM further revealed that protrusions resulting from CO admolecules in the (9 x radical 3) structure exhibited distinctly different corrugation heights, suggesting that the CO molecules resided at different sites on Au(111). This ordered structure predominated in the potential range between 0.1 and 0.7 V; however, it was converted into new structures of (7 x radical 7) and ( radical 43 x 2 radical 13) on the unreconstructed Au(111) when the potential was held at 0.8 V for ca. 60 min. The coverage of CO adlayer decreased accordingly from 0.28 to 0.13 before it was completely removed from the Au(111) surface at more positive potentials.     

Scanning tunneling microscopy studies of pulse deposition of dinuclear organometallic molecules on Au(111)

Ultrahigh-vacuum scanning tunneling microscopy (STM) was used to study trans-[Cl(dppe)2Ru(C Triple Bond C)6Ru(dppe)2Cl] [abbreviated as Ru2, diphenylphosphinoethane (dppe)] on Au(111). This large organometallic molecule was pulse deposited onto the Au(111) surface under ultrahigh-vacuum (UHV) conditions. UHV STM studies on the prepared sample were carried out at room temperature and 77 K in order to probe molecular adsorption and to characterize the surface produced by the pulse deposition process. Isolated Ru2 molecules were successfully imaged by STM at room temperature; however, STM images were degraded by mobile toluene solvent molecules that remain on the surface after the deposition. Cooling the sample to 77 K allows the solvent molecules to be observed directly using STM, and under these conditions, toluene forms organized striped domains with regular domain boundaries and a lattice characterized by 5.3 and 2.7 A intermolecular distances. When methylene chloride is used as the solvent, it forms analogous domains on the surface at 77 K. Mild annealing under vacuum causes most toluene molecules to desorb from the surface; however, this annealing process may lead to thermal degradation of Ru2 molecules. Although pulse deposition is an effective way to deposit molecules on surfaces, the presence of solvent on the surface after pulse deposition is unavoidable without thermal annealing, and this annealing may cause undesired chemical changes in the adsorbates under study. Preparation of samples using pulse deposition must take into account the characteristics of sample molecules, solvent, and surfaces.     

Adsorption and in situ scanning tunneling microscopy of cysteine on Au(111): Structure, energy, and tunneling contrasts

The amino acid L-cysteine (Cys) adsorbs in highly ordered (3 square root of 3 x 6) R30 degrees lattices on Au(111) electrodes from 50 mM ammonium acetate, pH 4.6. We provide new high-resolution in situ scanning tunneling microscopy (STM) data for the L-Cys adlayer. The data substantiate previous data with higher resolution, now at the submolecular level, where each L-Cys molecule shows a bilobed feature. The high image resolution has warranted a quantum chemical computational effort. The present work offers a density functional study of the geometry optimized adsorption of four L-Cys forms-the molecule, the anion, the neutral radical, and its zwitterion adsorbed a-top-at the bridge and at the threefold hollow site of a planar Au(111) Au12 cluster. This model is crude but enables the inclusion of other effects, particularly the tungsten tip represented as a single or small cluster of W-atoms, and the solvation of the L-Cys surface cluster. The computational data are recast as constant current-height profiles as the most common in situ STM mode. The computations show that the approximately neutral radical, with the carboxyl group pointing toward and the amino group pointing away from the surface, gives the most stable adsorption, with little difference between the a-top and threefold sites. Attractive dipolar interactions screened by a dielectric medium stabilize around a cluster size of six L-Cys entities, as observed experimentally. The computed STM images are different for the different L-Cys forms. Both lateral and vertical dimensions of the radical accord with the observed dimensions, while those of the molecule and anion are significantly more extended. A-top L-Cys radical adsorption further gives a bilobed height profile resembling the observed images, with comparable contributions from sulfur and the amino group. L-Cys radical a-top adsorption therefore emerges as the best representation of L-Cys adsorption on Au(111).     

Growth of nanocrystalline MoO3 on Au(111) studied by in situ scanning tunneling microscopy

The growth of nanocrystalline MoO3 islands on Au(111) using physical vapor deposition of Mo has been studied by scanning tunneling microscopy and low energy electron diffraction. The growth conditions affect the shape and distribution of the MoO3 nanostructures, providing a means of preparing materials with different percentages of edge sites that may have different chemical and physical properties than atoms in the interior of the nanostructures. MoO3 islands were prepared by physical vapor deposition of Mo and subsequent oxidation by NO2 exposure at temperatures between 450 K and 600 K. They exhibit a crystalline structure with a c(4 x 2) periodicity relative to unreconstructed Au(111). While the atomic-scale structure is identical to that of MoO3 islands prepared by chemical vapor deposition, we demonstrate that the distribution of MoO3 islands on the Au(111) surface reflects the distribution of Mo clusters prior to oxidation although the growth of MoO3 involves long-range mass transport via volatile MoO3 precursor species. The island morphology is kinetically controlled at 450 K, whereas an equilibrium shape is approached at higher preparation temperatures or after prolonged annealing at the elevated temperature. Mo deposition at or above 525 K leads to the formation of a Mo-Au surface alloy as indicated by the observation of embedded MoO3 islands after oxidation by NO2. Au vacancy islands, formed when Mo and Au dealloy to produce vacancies, are observed for these growth conditions.     

Role of the anion in the underpotential deposition of cadmium on a Rh(111) electrode: probed by voltammetry and in situ scanning tunneling microscopy

In situ scanning tunneling microscopy (STM) and cyclic voltammetry (CV) were employed to examine the underpotential deposition (UPD) of cadmium on a rhodium(111) electrode in sulfuric and hydrochloric acids. The (bi)sulfate and chloride anions in the electrolytes played a main role in controlling the number and arrangement of Cd adatoms. Deposition of Cd along with hydrogen adsorption occurred near 0.1 V (vs reversible hydrogen electrode) in either 0.05 M H2SO4 or 0.1 M HCl containing 1 mM Cd(ClO4)2. These coupled processes resulted in an erroneous coverage of Cd adatoms. The process of Cd deposition shifted positively to 0.3 V and thus separated from that of hydrogen in 0.05 M H2SO4 containing 0.5 M Cd2+. The amount of charge (80 microC/cm2) for Cd deposition in 0.5 M Cd2+ implied a coverage of 0.17 for the Cd adatoms, which agreed with in situ STM results. Regardless of [Cd2+], in situ STM imaging revealed a highly ordered Rh(111)-(6 x 6)-6Cd + HSO4- or SO42- structure in sulfuric acid,. In hydrochloric acid, in situ STM discerned a (2 x 2)-Cd + Cl structure at potentials where Cd deposition commenced. STM atomic resolution showed roughly one-quarter of a monolayer of Cd adatoms were deposited, ca. 50% more than in sulfuric acid. Dynamic in situ STM imaging showed potential dependent, reversible transformations between the (6 x 6) Cd adlattices and (square root 3 x square root 7)-(bi)sulfate structure, and between (2 x 2) and (square root 7 x square root 7)R19.1 degrees -Cl structures. The fact that different Cd structures observed in H2SO4 and HCl entailed the involvement of anions in Cd deposition, i.e. (bi)sulfate and chloride anions were codeposited with Cd adatoms on Rh(111).     

Observation from scanning tunneling microscopy of a striped phase for octanethiol adsorbed on Au(111) from solution

A self-assembled monolayer of 1-octanethiol was prepared on a Au(111) surface via liquid-phase adsorption. An investigation of the surface using ultrahigh-vacuum scanning tunneling microscopy revealed a striped phase of the octanethiol molecules under the conditions examined. This phase resembles the well-known "pinstripe" structure of alkanethiols on Au(111), with a registry that is similar to that of the previously observed p x radical3 structures. We discuss the nature of this structure with respect to those that have been observed for other n-alkanethiols.     

Self-assembled monolayers on Pt(111): molecular packing structure and strain effects observed by scanning tunneling microscopy

Self-assembled monolayers (SAMs) of octanethiol and benzeneethanethiol were deposited on clean Pt(111) surfaces in ultrahigh vacuum (UHV). Highly resolved images of these SAMs produced by an in situ scanning tunneling microscope (STM) showed that both systems organize into a super-structure mosaic of domains of locally ordered, closely packed molecules. Analysis of the STM images indicated a (square root 3 x square root 3)R30 degrees unit cell for the octanethiol SAMs and a 4(square root 3 x square root 3)R30 degrees periodicity based on 2 x 2 basic molecular packing for the benzeneethanethiol SAMs under the coverage conditions investigated. SAMs on Pt(111) exhibited differences in molecular packing and a lower density of disordered regions than SAMs on Au(111). Electron transport measurements were performed using scanning tunneling spectroscopy. Benzeneethanethiol/Pt(111) junctions exhibited a higher conductance than octanethiol/Pt(111) junctions.     

Single-molecule conductance of redox molecules in electrochemical scanning tunneling microscopy

Experimental data and theoretical notions are presented for 6-[1'-(6-mercapto-hexyl)-[4,4']bipyridinium]-hexane-1-thiol iodide (6V6) "wired" between a gold electrode surface and tip in an in situ scanning tunneling microscopy configuration. The viologen group can be used to "gate" charge transport across the molecular bridge through control of the electrochemical potential and consequently the redox state of the viologen moiety. This gating is theoretically considered within the framework of superexchange and coherent two-step notions for charge transport. It is shown here that the absence of a maximum in the Itunneling versus electrode potential relationship can be fitted by a "soft" gating concept. This arises from large configurational fluctuations of the molecular bridge linked to the gold contacts by flexible chains. This view is incorporated in a formalism that is well-suited for data analysis and reproduces in all important respects the 6V6 data for physically sound values of the appropriate parameters. This study demonstrates that fluctuations of isolated configurationally "soft" molecules can dominate charge transport patterns and that theoretical frameworks for compact monolayers may not be directly applied under such circumstances.     

Significance of local density of states in the scanning tunneling microscopy imaging of alkanethiol self-assembled monolayers

A systematic scanning tunneling microscopy (STM) study of alkanethiol self-assembled monolayers (SAMs) is presented as a function of the bias voltage, tunneling current, and tip-termini separation. Stable and etch-pit free SAMs of close-packed undecanethiol/Au(111) were obtained after annealing in ultrahigh vacuum. STM revealed two distinct c(4x2) structures with four nonequivalent molecules per unit cell. For both structures, reversible contrast variations occur upon systematically tuning the bias voltage, the current, and the tip-termini distance. These contrast transitions originate from probing the corresponding local density of states (LDOS) of each molecule and not from the reorientation of the alkanethiol chains. The STM contrast is particularly sensitive to the tip-termini separation in the range of 0.5-2.5 A, reflecting the distance-dependence of LDOS. At a fixed tip elevation, the STM contrast is less sensitive to changes in bias within 0.1-1.2 V. For the first time, we demonstrate that LDOS may override the physical height variations in the STM topographic contrast for alkanethiol SAM systems.     

Single molecule observations of the adsorption sites of methyl isocyanide on Pt(111) by low-temperature scanning tunneling microscopy

Scanning tunneling microscopy (STM) has been used to directly investigate the local structure of methyl isocyanide (CNCH3) adsorbed on Pt(111). At low coverages, CNCH3 is preferentially adsorbed at on-top sites, in agreement with earlier deductions based on vibrational spectroscopy. When dosed at low coverages at 50 K, the molecules tend to adsorb near other CNCH3 molecules with preferred distances of a and a, where a = 2.78 A is the lattice constant of Pt. Annealing the surface to 120 K, however, results in a more uniform separation of the molecules. At higher coverages, the CNCH3 molecules are observed to occupy both on-top and two-fold bridge sites. On the basis of STM image analysis, CNCH3 forms an ordered layer of (2 x 3) periodicity at 0.33 ML. Additional details on the structures of CNCH3 adsorbed at the on-top and two-fold bridge sites are provided by density functional theory (DFT) calculations. At a coverage that saturates the first layer (0.33 ML), the occupation ratio for the on-top and two-fold bridge bonded CNCH3 is 1:1, which is consistent with the results obtained from the combined use of experimental reflection absorption infrared spectroscopy (RAIRS) data and DFT calculations.     

Identification of single-strand DNA by in situ scanning tunneling microscopy

We report here in situ scanning tunneling microscopy imaging of hexaammineruthenium (II)/(III) (RuHex) binding to single-strand DNA oligonucleotide with 13 bases immobilized in a mixed monolayer on a single-crystal Au(111) surface. RuHex does not bind to the other component in the monolayer, mercaptohexanol. Images before and after addition of RuHex show a strong contrast increase, suggesting that single-stranded DNA is, indeed, conducting when a redox group is bound to the strand. When compared with previous results, the data also suggest that the mechanism of domain formation of the immobilized DNA is independent of the sequence.     

L-cysteine adsorption structures on Au(111) investigated by scanning tunneling microscopy under ultrahigh vacuum conditions

Adsorption structures formed upon vapor deposition of the natural amino acid L-cysteine onto the (111) surface of gold have been investigated by scanning tunneling microscopy under ultrahigh vacuum conditions. Following deposition at room temperature and at cysteine coverages well below saturation of the first monolayer, we found coexistence of unordered molecular islands and extended domains of a highly ordered molecular overlayer of quadratic symmetry. As the coverage was increased, a number of other structures with local hexagonal order emerged and became dominant. Neither of the room temperature, as-deposited, ordered structures showed any fixed rotational relationship to the underlying gold substrate, suggesting a comparatively weak and nonspecific molecule-substrate interaction. Annealing of the cysteine-covered substrate to 380 K lead to marked changes in the observed adsorption structures. At low coverages, the unordered islands developed internal order and their presence started to perturb the appearance of the surrounding Au(111) herringbone reconstruction. At coverages beyond saturation of the first monolayer, annealing led to development of a ( radical3 x radical3)R30 degrees superstructure accompanied by the formation of characteristic monatomically deep etch pits, i.e., the behavior typically observed for alkanethiol self-assembled monolayers on Au(111). The data thus show that as-deposited and thermally annealed cysteine adsorption structures are quite different and suggest that thermal activation is required before vacuum deposited cysteine becomes covalently bound to single crystalline Au(111).     

Ultrathin wagon-wheel-like TiOx phases on Pt(111): a combined low-energy electron diffraction and scanning tunneling microscopy investigation

Ultrathin ordered titanium oxide films on a Pt(111) surface have been prepared by reactive deposition and characterized by low-energy electron diffraction and scanning tunneling microscopy (STM). According to the postdeposition annealing condition, three different phases have been prepared which show a wagon-wheel-like (hereafter ww) morphological pattern. Two of them can be prepared as single phases (w- and w'-TiO(x)) and one (w(int)-TiO(x)) as a mixed phase which always coexists with at least one of the other two phases. All of them are formed by a Ti-O bilayer, where the Ti atoms are located at the interface with the substrate, but they show a rather distinct STM ww pattern. The experimental STM contrast has been discussed on the basis of a Moiré-like model, i.e., as deriving from a modulation of the Ti occupancy of the different substrate sites (i.e., hollow, bridge and on-top sites). The major part of the STM data can be easily interpreted on the basis of this simplified model.     

Behavior of binary alcohol mixtures adsorbed on graphite using calorimetry and scanning tunneling microscopy

The mixing behavior of binary combinations of linear alcohols adsorbed from their liquids is studied by calorimetry and scanning tunneling microscopy (STM). In particular, we consider combinations of primary alcohols that differ by a single methylene group. Where the shorter alcohol has an odd number of carbon atoms, the combination is found to mix, essentially, ideally on the surface. However, for combinations where the shorter alcohol has an even number of carbon atoms, we find that there is molecular complex formation for shorter members but ideal mixing for longer (n>12) homologues. This extends previous work in this area by the determination of the limits of surface molecular complex formation. We also exploit STM to address this unexpected complex formation.