Vibrational spectroscopic studies and ab initio calculations of 5-methyl-2-(p-fluorophenyl)benzoxazole

FT-Raman and FT-IR spectra of 5-methyl-2-(p-fluorophenyl)benzoxazole were recorded and analysed. The vibrational frequencies of the compound have been computed using the Hartree-Fock/6-31G* basis and compared with the experimental values.     

Evidence for a C-H...pi type weak interaction: 1 : 1 complex of styrene with acetylene studied by mass selective high-resolution UV spectroscopy and ab initio calculations

The 1 : 1 complex of styrene with acetylene has been studied by mass selective low- and high-resolution UV resonance-enhanced two-photon ionisation (R2PI) spectroscopy combined with genetic-algorithm-based computer-aided fit of the spectra with partial rotational resolution, and high level ab initio quantum chemistry calculations. Two stable conformeric geometries of the 1 : 1 complex of styrene and acetylene have been theoretically found: one with acetylene binding to styrene as a proton donor, and one with acetylene acting as a proton acceptor. From the analysis of the vibronic structure of the S1<-- S0 spectrum and the fit of the highly resolved spectrum of the 0 origin band of the complex it is shown that the favoured conformation is the one in which acetylene binds to the benzene ring of styrene through formation of a non-conventional hydrogen bond of C-H...pi type with no marked change of the transition moment orientation of styrene. The styrene moiety remains planar and the acetylene molecule is tilted by a small angle of 4 degrees relative to the C6 symmetry axis of the benzene ring, most likely due to the reduced symmetry of the benzene ring pi electrons rather than to a direct interaction with the vinyl group.     

Water binding sites in 2-para- and 2-ortho-fluorophenylethanol: a high-resolution UV experiment and ab initio calculations

The singly hydrated complexes of the flexible prototype molecules 2-para-fluorophenylethanol and 2-ortho-fluorophenylethanol have been investigated by combination of high-resolution resonance-enhanced two-photon ionization spectroscopy in a cold supersonic beam and quantum chemistry ab initio calculations. We have identified the conformational structures of the above complexes, which correspond to water binding to the most stable gauche monomer's conformers in both cases. No structural changes of the host molecules upon the attachment of a single water molecule have been found. For the 2-ortho-fluorophenylethanol-water complex we have observed an additional structure with one of the higher-in-energy gauche conformers of the monomer. This corroborates the assumption that the complexation with water stabilizes the higher-energy conformer of the monomer, precluding it from relaxation to the lowest-energy geometry.     

Synthesis, high-resolution millimeter-wave spectroscopy, and ab initio calculations of ethylmercury hydride

The millimeter-wave rotational spectrum of an organomercury compound, ethylmercury hydride, has been recorded and assigned for the first time. The spectroscopic study is complemented by quantum chemical calculations taking into account relativistic effects on the mercury atom. The very good agreement between theoretical and experimental molecular parameters validates the chosen ab initio method, in particular its capability to predict accurate quartic centrifugal distortion constants related to this type of compound. Estimations of the nuclear quadrupole coupling constants have less predictive power than those of the structural parameters, but are good enough to satisfy the spectroscopic needs. In addition, the orientation of the axis of the H-Hg-C bonds deduced from the experimental nuclear quadrupole coupling constants compares well with the corresponding ab initio value. From the good agreement between experimental and theoretical results, together with the observation of the six most abundant isotopes of mercury, ethylmercury hydride is unambiguously identified as the product of the chemical reaction described here, and its calculated equilibrium geometry is confirmed.     

Chemical bonding in Si5(2-) and NaSi5(-) via photoelectron spectroscopy and ab initio calculations

Photoelectron spectroscopy and ab initio calculations are used to investigate the electronic structure and chemical bonding of Si5(-) and Si5(2-) in NaSi5(-). Photoelectron spectra of Si5(-) and NaSi5(-) are obtained at several photon energies and are compared with theoretical calculations at four different levels of theory, TD-B3LYP, R(U)OVGF, UCCSD(T), and EOM-CCSD(T), all with 6-311+G(2df) basis sets. Excellent agreement is observed between experiment and theory, confirming the obtained ground-state structures for Si5(-) and Si5(2-), which are both found to be trigonal bipyramid with D3h symmetry at several levels of theory. Chemical bonding in Si5, Si5(-), and Si5(2-) is analyzed using NPA, molecular orbitals, ELF, and NICS indices. The bonding in Si5(2-) is compared with that in the isoelectronic and isostructural B5H5(2-) species, but they are found to differ due to the involvement of electron densities, which are supposed to be lone pairs in the skeletal bonding in Si5(2-).     

Limonene: electronic state spectroscopy by high-resolution vacuum ultraviolet photoabsorption, electron scattering, He(I) photoelectron spectroscopy and ab initio calculations

Electronic state spectroscopy of limonene has been investigated using vacuum ultraviolet photoabsorption spectroscopy in the energy range 5.0-10.8 eV. The availability of a high resolution photon beam (~0.075 nm) enabled detailed analysis of the vibrational progressions and allowed us to propose, for the first time, new assignments for several Rydberg series. Excited states located in the 7.5-8.4 eV region have been studied for the first time. A He(I) photoelectron spectrum has also been recorded from 8.2 to 9.5 eV and compared to previous low resolution works. A new value of 8.521 ± 0.002 eV for the ground ionic state adiabatic ionisation energy is proposed. Absolute photoabsorption cross sections were derived in the 10-26 eV range from electron scattering data. All spectra presented in this paper represent the highest resolution data yet reported for limonene. These experiments are complemented by new ab initio calculations performed for the three most abundant conformational isomers of limonene, which we then used in the assignment of the spectral bands.     

Lithium cluster anions: photoelectron spectroscopy and ab initio calculations

Structural and energetic properties of small, deceptively simple anionic clusters of lithium, Li(n)(-), n = 3-7, were determined using a combination of anion photoelectron spectroscopy and ab initio calculations. The most stable isomers of each of these anions, the ones most likely to contribute to the photoelectron spectra, were found using the gradient embedded genetic algorithm program. Subsequently, state-of-the-art ab initio techniques, including time-dependent density functional theory, coupled cluster, and multireference configurational interactions methods, were employed to interpret the experimental spectra.     

Evidence of an isomeric pair in furan...HCl: Fourier transform infrared spectroscopy and ab initio calculations

For the first time the coexistence of a sigma- and a pi-complex in the C(4)H(4)O:HCl system has been observed, in the same supersonic expansion of a molecular jet seeded with argon (or helium) or in a flow-cooled cell at 240 K. This is an exception to the third of the Legon-Miller rules which claims the sigma-structure to be the only one to exist. On the grounds of energetic considerations and band contour simulations, two observed bands at 2787.7 and 2795.5 cm(-1) of the nu(s) HCl stretching frequency are assigned to the two complexes, recorded as Fourier transform infrared spectra with a resolution between 0.2 and 0.5 cm(-1). Complementary calculations show that the use of the standard second-order Moller-Plesset perturbation theory may be erroneous for such a complex, due of the overestimation of the dispersion contribution with respect to the electrostatic term. It is finally established that only a balanced version of the second-order Moller-Plesset perturbation method, spin-component scaled-MP2, or a higher level of theory like a coupled-cluster approach, can provide a reliable energetic analysis for this complex.     

Vibrational spectroscopic studies and ab initio calculations of 5-methyl-2-(p-methylaminophenyl)benzoxazole

FT-IR spectra of 5-methyl-2-(p-methylaminophenyl)benzoxazole was recorded and analysed. The vibrational frequencies of the compound have been computed using the Hartree-Fock/6-31G* basis and compared with the experimental values.     

Identification of conformational structures of 2-phenylethanol and its singly hydrated complex by mass selective high-resolution spectroscopy and ab initio calculations

The flexible prototype molecule 2-phenylethanol (2-PE) and its singly hydrated complex have been investigated in a cold supersonic beam by a combination of high-resolution two-color R2PI spectroscopy and quantum chemistry ab initio calculations. The existence of two monomer structures separated by a high potential energy barrier, gauche and anti ones, was proven. Higher energy conformers are supposed to relax to the observed ones during the jet expansion process. We have identified the conformational structure of the complex between 2-PE and water, which corresponds to water binding to the most stable gauche conformer. No detectable structural changes of the host 2-PE molecule have been observed upon attachment of a single water molecule. A conformational relaxation mechanism is suggested also for the 2-PE x H2O complex.     

The interaction of water and dibromine in the gas phase: an investigation of the complex H(2)O...Br(2) by rotational spectroscopy and ab initio calculations

The ground-state rotational spectra of eight isotopomers of a complex formed by water and dibromine in the gas phase were observed by pulsed-jet, Fourier transform microwave spectroscopy. The spectroscopic constants B(0), C(0), delta(J), delta(JK), chi(aa)(Br(x)) (x=i for inner, o for outer), [chi(bb)(Br(x))-chi(cc)(Br(x))] and M(bb)(Br(x)) were determined for H(2)O...(79)Br(79)Br, H(2)O...(81)Br(79)Br, H(2)O...(79)Br(81)Br, H(2)O...(81)Br(81)Br, D(2)O...(79)Br(81)Br and D(2)O...(81)Br(81)Br. For the isotopomers HDO...(79)Br(81)Br and HDO...(81)Br(81)Br, only (B(0) + C(0))/2, delta(J), the chi(aa)(Br(x)) and M(bb)(Br(x)) were determinable. The spectroscopic constants were interpreted on the basis of several models of the complex to give information about its geometry, binding strength and the extent of electronic rearrangement on complex formation. The molecule H(2)O...Br(2) has C(s) symmetry with a pyramidal configuration at O. The zero-point effective quantities r(O...Br(i))=2.8506(1) A and phi(0)=46.8(1), where phi is the angle between the C(2) axis of H(2)O and the O...Br-Br internuclear axis, were obtained under the assumption of monomer geometries unchanged by complexation. Ab initio calculations, carried out at the aug-cc-pVDZ/MP2 level of theory, gave the equilibrium values r(e)(O...Br(i))=2.7908 A and phi(e)=45.7 degrees and confirmed the collinearity of the O...Br-Br nuclei. The potential energy function V(phi), also determined ab initio, showed that the wavenumber required for inversion of the configuration at O in the zero-point state is only 9 cm(-1). By interpreting the Br nuclear quadrupole coupling constants, the fractions delta(O-->Br(i))=0.004(5) and delta (Br(i)-->Br(o))=0.050(2) of an electron were determined to be transferred from O to Br(i) and Br(i) to Br(o), respectively, when the complex is formed. The complex is relatively weak, as indicated by the small value k(sigma)=9.8(2) N m(-1) of the intermolecular stretching force constant obtained from delta(J). A comparison of the properties, similarly determined, of H(2)O...F(2), H(2)O...Cl(2), H(2)O...Br(2), H(2)O...BrCl, H(2)O...ClF and H(2)O...ICl is presented.     

Microscopic solvation of NaBO2 in water: anion photoelectron spectroscopy and ab initio calculations

We investigated the microscopic solvation of NaBO(2) in water by conducting photoelectron spectroscopy and ab initio studies on NaBO(2)(-)(H(2)O)(n) (n = 0-4) clusters. The vertical detachment energy (VDE) of NaBO(2)(-) is estimated to be 1.00 ± 0.08 eV. The photoelectron spectra of NaBO(2)(-)(H(2)O)(1) and NaBO(2)(-)(H(2)O)(2) are similar to that of bare NaBO(2)(-), except that their VDEs shift to higher electron binding energies (EBE). For the spectra of NaBO(2)(-)(H(2)O)(3) and NaBO(2)(-)(H(2)O)(4), a low EBE feature appears dramatically in addition to the features observed in the spectra of NaBO(2)(-)(H(2)O)(0-2). Our study shows that the water molecules mainly interact with the BO(2)(-) unit in NaBO(2)(-)(H(2)O)(1) and NaBO(2)(-)(H(2)O)(2) clusters to form Na-BO(2)(-)(H(2)O)(n) type structures, while in NaBO(2)(-)(H(2)O)(3) and NaBO(2)(-)(H(2)O)(4) clusters, the water molecules can interact strongly with the Na atom, therefore, the Na-BO(2)(-)(H(2)O)(n) and Na(H(2)O)(n)···BO(2)(-) types of structures coexist. That can be seen as an initial step of the transition from a contact ion pair (CIP) structure to a solvent-separated ion pair (SSIP) structure for the dissolution of NaBO(2).     

Investigation of C–HX (X=N, O, S) intramolecular hydrogen bond in 1-vinyl-2-(2′-heteroaryl)pyrroles by ab initio calculations

The C–HX (X=N, O, S) intramolecular hydrogen bond between the α-hydrogen of the vinyl group and the corresponding heteroatom in the series of 1-vinyl-2-(2′-heteroaryl)pyrroles was examined by ab initio calculations at the B3LYP/6-311(d,p) level. It was shown that the C–HN hydrogen bond is stronger than the C–HO hydrogen bond and the latter is, in turn, stronger than the C–HS hydrogen bond. This conclusion is supported by calculations of ¹H NMR chemical shieldings.     

Pulsed-field ionization electron spectroscopy and ab initio calculations of copper-diazine complexes

Copper complexes of pyrazine (1,4-C4H4N2), pyrimidine (1,3-C4H4N2), and pyridazine (1,2-C4H4N2) are produced in laser-vaporization supersonic molecular beams and studied by pulsed-field ionization zero electron kinetic energy (ZEKE) spectroscopy and second-order Moller-Plesset perturbation theory. Both sigma and pi complexes are considered by these ab initio calculations; only sigma structures are identified in these experiments. Adiabatic ionization energies and metal-ligand vibrational frequencies of the sigma complexes are measured from the ZEKE spectra. Metal-ligand bond dissociation energies of these complexes are obtained from a thermochemical cycle. The ionization energies follow the trend of Cu pyridazine (43,054 cm(-1)) < Cu pyrimidine (45,332 cm(-1)) < Cu pyrazine (46,038 cm(-1)); the bond energies are in the order of Cu pyridazine (56.2 kJ mol(-1)) > Cu pyrazine (48.5 kJ mol(-1)) approximately Cu pyrimidine (46.4 kJ mol(-1)). The stronger binding of pyridazine is due to its larger electric dipole moment and possibly bidentate binding.     

Flexible H2O2 in water: electronic structure from photoelectron spectroscopy and ab initio calculations

The effect of hydration on the electronic structure of H(2)O(2) is investigated by liquid-jet photoelectron spectroscopy measurements and ab initio calculations. Experimental valence electron binding energies of the H(2)O(2) orbitals in water are, on average, 1.9 eV red-shifted with respect to the gas-phase molecule. A smaller width of the first peak was observed in the photoelectron spectrum from the solution. Our experiment is complemented by simulated photoelectron spectra, calculated at the ab initio level of theory (with EOM-IP-CCSD and DFT methods), and using path-integral sampling of the ground-state density. The observed shift in ionization energy upon solvation is attributed to a combination of nonspecific electrostatic effects (long-range polarization) and of the specific interactions between H(2)O(2) and H(2)O molecules in the first solvation shell. Changes in peak widths are found to result from merging of the two lowest ionized states of H(2)O(2) in water due to conformational changes upon solvation. Hydration effects on H(2)O(2) are stronger than on the H(2)O molecule. In addition to valence spectra, we report oxygen 1s core-level photoelectron spectra from H(2)O(2)(aq), and observed energies and spectral intensities are discussed qualitatively.     

Photoionization of C(4) molecular beam: ab initio calculations

Large computations are performed on the C(4) (+) cation in order to characterize its stable isomers and its lowest electronic excited states using configuration interaction methods and large basis sets. Several stable isomers are found including a linear C(4) (+)(l-C(4) (+)), a rhombic C(4) (+)(r-C(4) (+)) (or cyclic), and a branched (d-C(4) (+)) structure. Our calculations show a high density of electronic states for all of these isomers favoring their interactions. By combining the present ab initio data and those on neutral C(4), the l-C(4)(X)+hnu-->l-C(4) (+)(X(+))+e(-), d-C(4)(X)+hnu-->d-C(4) (+)(X(+))+e(-), and r-C(4)(X)+hnu-->r-C(4) (+)(X(+))+e(-) vertical photoionization transition energies are computed at 10.87, 10.92, and 10.77 eV, respectively. Photoionizing a C(4) molecular beam results on an onset at 10.4-10.5 eV and then to a linear increase of the signal due to the opening of several ionization channels involving most of the C(4) and C(4) (+) isomers and electronic states.     

Hydration of ion-biomolecule complexes: ab initio calculations and gas-phase vibrational spectroscopy of K+ (indole)m(H2O)n

In recent years neutral indole(H2O)n clusters have been used to model the hydration of biomolecules containing an indole moiety. Both experimental and theoretical studies of the binary indole...OH2 system show NH...OH sigma hydrogen-bonding. By introducing a cation to the indole...OH2 model, cation...pi and ion...dipole electrostatic interactions are placed in direct competition with conventional indole...OH2 hydrogen-bonding. The effects, arising from a monovalent potassium cation on (indole)m(H2O)n clusters, were investigated using infrared photodissociation spectroscopy in the OH and NH stretching regions. In K+ (indole)1(H2O)(n < or = 4) and K+ (indole)2(H2O)(m < or = 3) clusters, the electrostatic ion...ligand interaction inhibits the formation of an indole NH...OH2 sigma hydrogen-bond. However, indole...H2O pi hydrogen-bonding via the five-membered indole ring is observed with three or more ligands around the ion.     

Abstraction kinetics of H-atom by OH radical from pinonaldehyde (C10H16O2): ab initio and transition-state theory calculations

The kinetics and abstraction rate coefficients of hydroxyl radical (OH) reaction with pinonaldehyde were computed using G3(MP2) theory and transition-state theory (TST) between 200 and 400 K. Structures of the reactants, reaction complexes (RCs), product complexes (PCs), transition states (TSs), and products were optimized at the MP2(FULL)/6-31G* level of theory. Fifteen transition states were identified for the title reaction and confirmed by intrinsic reaction coordinate (IRC) calculations. The contributions of all the individual hydrogens in the substrate molecule to the total reaction are computed. The quantum mechanical tunneling effect was computed using Wigner's and Eckart's methods (both symmetrical and unsymmetrical methods). The reaction exhibits a negative temperature dependent rate coefficient, k(T) = (1.97 ± 0.34) × 10(-13) exp[(1587 ± 48)/T] cm(3) molecule(-1) s(-1), k(T) = (3.02 ± 0.56) × 10(-13) exp[(1534 ± 52/T] cm(3) molecule(-1) s(-1), and k(T) = (4.71 ± 1.85) × 10(-14) exp[(2042 ± 110)/T] cm(3) molecule(-1) s(-1) with Wigner's, Eckart's symmetrical, and Eckart's unsymmetrical tunneling corrections, respectively. Theoretically calculated rate coefficients are found to be in good agreement with the experimentally measured ones and other theoretical results. It is shown that hydrogen abstraction from -CHO position is the major channel, whereas H-abstraction from -COCH(3) is negligible. The atmospheric lifetime of pinonaldehyde is computed to be few hours and found to be in excellent agreement with the experimentally estimated ones.     

Ionization of aqueous cations: photoelectron spectroscopy and ab initio calculations of protonated imidazole

Photoelectron spectroscopy and ab initio calculations employing a nonequilibrium polarizable continuum model were employed for determining the vertical ionization potential of aqueous protonated imidazole. The experimental value of 8.96 eV is in in excellent agreement with calculations, which also perform quantitatively for ionization of aqueous alkali cations as benchmark species. The present results show that protonation of imidazole increases its vertical ionization potential up in water by 0.7 eV, which is significantly larger than the resolution of the experiment or the error of the calculation. This combined experimental and computational approach may open the possibility for quantitatively analyzing the protonation state of histidine, of which imidazole is the titratable side chain group, in aqueous peptides and proteins.