Synthesis, characterization and structure determination of two isotypes of a layered aluminophosphate with a new 2D network topology

Two isotypes of a new layered aluminophosphate, further denoted MDAP-3 and MDAE-1, have been synthesized under hydrothermal conditions using N-methyl-1,3-propanediamine and N-methyl-ethylenediamine, respectively. MDAP-3, with the empirical formula [Al₂(HPO₄)(PO₄)₂](C₄N₂H₁₄)(H₂O), crystallizes in the orthorhombic space group Pna2(1) (No. 33) with , , , Z=4, R₁=0.0498 and wR₂=0.1217. The second solid, MDAE-1, with the empirical formula [Al₂(HPO₄)(PO₄)₂](C₃N₂H₁₂)(H₂O), crystallizes in the same space group with , , , Z=4, R₁=0.0407 and wR₂=0.0954. The two compounds possess the same layer topology. Inorganic layers contain PO₃=O, PO₃OH, AlO₄ and AlO₆ polyhedra, linked together to generate a new 4×8 net. MDAP-3 and MDAE-1 represent the first examples of two-dimensional layered aluminophosphates with the Al₂P₃O₁₂ stoichiometry, and containing AlO₆ octahedra.     

Synthesis,crystal structure,thermal stability,and photoluminescence of a 3-D silver(I) network with twofold interpenetrated dia-f topology

A silver(I) coordination polymer with mixed 3,3′,5,5′-tetramethyl-4,4′-bipyrazole (bpz) and maleic acid, [Ag₂(bpz)₃(fum)]_n (1, H₂fum = fumaric acid), was synthesized under hydrothermal condition by in situ isomerization of maleic acid to fumaric acid and characterized by elemental analysis, IR spectroscopy, powder X-ray diffraction, TGA, and single-crystal X-ray diffraction. The maleic acid in situ isomerizes to fumaric acid and participates in the formation of 1. Topologically, the structure of 1 features a rare 3-connected twofold interpenetrated dia-f net with a point symbol of {4.14²}. Compound 1 exhibits photoluminescence in the solid state with an emission maximum at 470 nm upon excitation at 365 nm at room temperature, which is attributed to intraligand or/and interligand π → π* transition.     

Synthesis and characterization of two new metal–organic frameworks with interpenetrated structures and luminescent properties

Two new metal–organic compounds, [Ag₂(HADC)₂(bimh)] (1) and [Cd(ADC)(bpp)]_n (2) [H₂ADC = 1,3-adamantanedicarboxylic acid, bimh = 1,6-bis(2-methyl-imidazole-1-yl)hexane, bpp = 1,3-bis(4-pyridyl)propane], have been synthesized and characterized. Compound 1 exhibits a discrete symmetric unit with 0D→2D interpenetrating structure. Compound 2 crystallizes in a chiral space group P212121 and presents a threefold interpenetrated 3D diamondoid network containing three helical chains. Thermal stability, X-ray powder diffraction, and luminescence for 1 and 2 are also measured and discussed.     

From diamondoid network to (4,4) net: effect of ligand topology on the supramolecular structural diversity

While N,N'-bis(4-pyridyl)urea affords a 5-fold interpenetrated diamondoid network, its positional isomer N,N'-bis(3-pyridyl)urea gave a net-to-net hydrogen-bonded (4,4) net (square grid network) displaying temperature-dependent anion-induced reversible single-crystal-to-single-crystal disorder-order phase transition, when the ligands are reacted with zinc perchlorate.     

Design of a new mimochrome with unique topology

Peptide-based metalloprotein models represent useful systems to help understand how metalloproteins can support different functions, by the use of similar metal ion cofactors. In order to shed light on the role of the protein matrix in modulating the heme properties, we developed new models: mimochromes. They are pseudo-C(2) symmetric systems, composed of two helical peptides covalently linked to the deuteroporphyrin. The use of C(2) symmetry is particularly advantageous, because it simplifies the design, synthesis and characterization. However, it leaves the problem of possible diastereomeric forms. In the cobalt complex of the first derivative, mimochrome I, Lambda and Delta isomers were indeed experimentally observed. All the insights derived from the Co(III)-mimochrome I structure were used to obtain a re-designed molecule, mimochrome IV. The spectroscopic characterization of the iron and cobalt derivatives suggested the presence of the Lambda isomer as unique species. The NMR solution structure of the diamagnetic Co(III)-mimochrome IV confirmed the ability of the molecule to adopt a unique topology, and revealed the peptide chains to be in helical conformation, as designed. The insertion of intramolecular, inter-chain interactions was successful in favoring the formation of one of the two possible diastereomers. The stereochemically stable structure of mimochrome IV provides an attractive model for modulating the redox potential of the heme, by simple changing the peptide chain composition around the heme.     

Selective CO2 adsorption in a robust and water-stable porous coordination polymer with new network topology

A robust and water-stable porous coordination polymer [Cd(NDC)(0.5)(PCA)]·G(x) (1) (H(2)NDC = 2,6-napthalenedicarboxylic acid, HPCA = 4-pyridinecarboxylic acid, G = guest molecules) with new network topology has been synthesized solvothermally. The framework is 3D porous material and forms a 1D channel along the c-axis, with the channel dimensions ~9.48 × 7.83 ?(2). The compound has high selectivity in uptake of CO(2) over other gases (H(2), O(2), Ar, N(2), and CH(4)). The framework is highly stable in presence of water vapor even at 60 °C. The high CO(2) selectivity over other gases and water stability makes the compound promising candidate for industrial postcombustion gas separation application.     

Undulating layers in a new rhodate network: structure of Bi(1.4)CuORh5O10

A new rhodate, Bi(1.4)CuRh(5)O(11), with an hitherto unknown channel structure containing undulating layers of RhO(6) octahedra sharing corners and edges has been discovered and its structure refined from single crystal X-ray diffraction data. The channels contain Bi(3+), Cu(2+), and some O strongly bound to Cu. The Cu coordination is distorted square planar. Mixed Rh(3+)/Rh(4+) valency leads to significant electrical conductivity.     

A new family of octanuclear Mn complexes with a rod-like topology

Three new octanuclear compounds were prepared from reactions of [Mn(O₂CR)₂]·2H₂O (R = Et or Ph) with the diols 1,3-propanediol (pdH₂) or 2-methyl-1,3-propanediol (mpdH₂) in the presence of NaN₃. All three compounds [Mn₈(N₃)₄(O₂CR)₆(L)₄(py)₆] (L = pd²⁻, R = Et 1; L = mpd²⁻, R = Et 2; L = pd²⁻, R = Ph 3) (py = pyridine) possess a novel near-planar, rod-like topology. Dc and ac magnetic susceptibility studies in the 2–300 K range for complexes 1 and 2 revealed the presence of dominant antiferromagnetic exchange interactions, leading to diamagnetic ground spin states.     

Functionalization of single layers and nanofibers: a new strategy to produce polymer nanocomposites with optimized properties

Nanocomposites are the emerging materials of the 21st century in view of their possessing design uniqueness without any compromises, certain unusual property combinations that are not found in conventional composites, as well as a wide spectrum of applications. Polymer-based layered compound nanocomposites have special place in view of their best property enhancement. Hence, the objective of this article is to bring new ideas to optimize the design of polymer/layered compounds/fibrous nanocomposites, starting with a brief overview of the preparation, structure, properties and applications. The proposed strategy suggests the use of synthetic and natural layered compounds, taking into account their ability to be exfoliated in the form of single layers, which can be chemically grafted with key molecules. The same procedure can also be applied to fibrous materials. These surface-grafted molecules can carry reactive groups to be bonded to the polymer matrices. Thus adhesion between the reinforcement and the polymer matrix can be achieved. This methodology, which has not been explored systematically in the specialized literature, can be used to produce polymer nanocomposites with low-cost fibrous materials having similarity to expensive carbon nanotubes exhibiting optimized dispersion, interfacial bonding, and attractive physical and other properties.     

From isocyanides to trichloropyruvamides: application to a new preparation of oxamide derivatives

Isocyanides react readily with trichloroacetic acid anhydride forming stable hydrates of trichloropyruvamides. These compounds are valuable intermediates for obtaining oxamides by reaction with TMSCl/NEt₃ followed by addition of an amine.     

Structural diversity of two novel complexes of Co(II) with bis-triazole ligand: From one-dimensional chain to two-dimensional porous network

Using two novel bis-triazole ligands, 2,6-bis(1,2,4-triazole-4-yl)pyridine (L¹) and 1,6-bis(1,2,4-triazole-1-yl)hexane (L²), one novel one-dimensional (1D) chain polymer [Co(NCS)₂(L¹)₂] _n (I) and one two-dimensional (2D) coordination polymer [Co(NCS)₂(L²)₂] _n (II) have been synthesized and structurally characterized. The crystal crystallizes in the triclinic system for I, space group $P\bar 1$ , a = 7.879(6), b = 8.830(7), c = 9.837(8)Å, α = 70.230(11)°, β = 115.474(6)°, γ = 85.591(12)°, Z = 1. The crystal crystallizes in the mo-noclinic system for II, space group $P\bar 1$ , a = 7.879(6), b = 8.830(7), c = 9.837(8) α = 70.230(11)°, β = 115.474(6)°, γ = 85.591(12)°, Z = 1. The structural diversity of these two new Co(II) complexes vary from 1D chain to 2D porous supramolecular network, which may be ascribed to ligand directing effects under similar synthetic conditions (L¹ contains rigid pyridine spacers while L2 contains flexible hexane spacers).     

Modeling three-dimensional network formation with an atomic lattice model: application to silicic acid polymerization

We present an atomic lattice model for studying the polymerization of silicic acid in sol-gel and related processes for synthesizing silica materials. Our model is based on Si and O atoms occupying the sites of a body-centered-cubic lattice, with all atoms arranged in SiO(4) tetrahedra. This is the simplest model that allows for variation in the Si-O-Si angle, which is largely responsible for the versatility in silica polymorphs. The model describes the assembly of polymerized silica structures starting from a solution of silicic acid in water at a given concentration and pH. This model can simulate related materials-chalcogenides and clays-by assigning energy penalties to particular ring geometries in the polymerized structures. The simplicity of this approach makes it possible to study the polymerization process to higher degrees of polymerization and larger system sizes than has been possible with previous atomistic models. We have performed Monte Carlo simulations of the model at two concentrations: a low density state similar to that used in the clear solution synthesis of silicalite-1, and a high density state relevant to experiments on silica gel synthesis. For the high concentration system where there are NMR data on the temporal evolution of the Q(n) distribution, we find that the model gives good agreement with the experimental data. The model captures the basic mechanism of silica polymerization and provides quantitative structural predictions on ring-size distributions in good agreement with x-ray and neutron diffraction data.     

Synthesis,structure, and magnetic properties of two new vanadocarboxylates with three-dimensional hybrid frameworks

(V(III)(OH))(2)[C(6)H(2)(CO(2))(4)].4H(2)O (labeled MIL-60) and V(III)(OH)[(2)(O(2)C)C(6)H(2)(COOH)(2)].H(2)O (labeled MIL-61) were hydrothermally synthesized from mixtures of VCl(3), 1,2,4,5-benzenetetracarboxylic acid, and water heated for 3 days at 473 K. The structure of MIL-60 was solved from single-crystal X-ray diffraction data in the triclinic centrosymmetric P1 (No. 2) space group with lattice parameters a = 6.3758(5) A, b = 6.8840(5) A, c = 9.0254(5) A, alpha = 69.010(2) degrees, beta = 85.197(2) degrees, gamma = 79.452(2) degrees, V = 363.53(5) A(3), and Z = 1. The structure of MIL-61 was ab initio determined from an X-ray powder diffraction pattern. MIL-61 crystallizes in the Pnma (No. 62) orthorhombic space group with lattice parameters a = 14.8860(1) A, b = 6.9164(1) A, c = 10.6669(2) A, V = 1098.23(3) A(3), and Z = 4. Both structures contain the same inorganic building block that consists of trans chains of V(III)O(4)(OH)(2) octahedra. The three-dimensional frameworks of MIL-60 and MIL-61 are constituted by the linkage of these chains via the organic molecules so delimiting the channels or cages where the water molecules are encapsulated. The magnetic behavior of these two phases is presented: MIL-60 is paramagnetic, and MIL-61 antiferromagnetically orders below T(N) = 55(5) K.     

Crystal structure of zeolite MCM-68: a new three-dimensional framework with large pores

The crystal structure of the aluminosilicate MCM-68 was solved from synchrotron powder diffraction data by the program FOCUS. The unit cell framework contains Si100.6Al11.4O224. This material crystallizes in space group P42/mnm, where, after Rietveld refinement, a=18.286(1) A and c=20.208(2) A. A three-dimensional framework is found that contains continuous 12-ring channels and two orthogonal, intersecting, undulating 10-ring channels. Rietveld refinement of the model coordinates optimizes the framework geometry, to match the observed intensity profile by Rwp=0.1371, R(F2)=0.1411. It is not possible to determine the location of approximately 0.84 K+ cations remaining in the unit cell after the material is steamed and then dehydrated. The framework model also successfully predicts observed electron diffraction data in two projections, and the tetragonal projection can be determined independently from these data by direct methods. The calculated density of the framework structure is 1.66 g/cm3, and the T-site framework density is 16.6 T/1000 A3.     

Polypeptide folding on a conformational‐space network: Dependence of network topology on the structural discretization procedure

Mapping the conformational space of a polypeptide onto a network of conformational states involves a number of subjective choices, mostly in relation to the definition of conformation and its discrete nature in a network framework. Here, we evaluate the robustness of the topology of conformational‐space networks derived from Molecular Dynamics (MD) simulations with respect to the use of different discretization (clustering) methods, variation of their parameters, simulation length and analysis time‐step, and removing high‐frequency motions from the coordinate trajectories. In addition, we investigate the extent to which polypeptide dynamics can be reproduced on the resulting networks when assuming Markovian behavior. The analysis is based on eight 500 ns and eight 400 ns MD simulations in explicit water of two 10‐residue peptides. Three clustering algorithms were used, two of them based on the pair‐wise root‐mean‐square difference between structures and one on dihedral‐angle patterns. A short characteristic path length and a power‐law behavior of the probability distribution of the node degree are obtained irrespective of the clustering method or the value of any of the tested parameters. The average cliquishness is consistently one or two orders of magnitude larger than that of a random realization of a network of corresponding size and connectivity. The cliquishness as function of node degree and the kinetic properties of the networks are found to be most dependent on clustering method and/or parameters. Although Markovian simulations on the networks reproduce cluster populations accurately, their kinetic properties most often differ from those observed in the MD simulations. © 2010 Wiley Periodicals, Inc. J Comput Chem, 2010