Experimental and theoretical study of the intramolecular C–H···N and C–H···S hydrogen bonding effects in the 1H and 13C NMR spectra of the 2‐(alkylsulfanyl)‐5‐amino‐1‐vinylpyrroles: a particular state of amine nitrogen

In the ¹H NMR spectra of the 1‐vinylpyrroles with amino‐ and alkylsulfanyl groups in 5 and 2 positions, an extraordinarily large difference between resonance positions of the H_A and H_B terminal methylene protons of the vinyl group is discovered. Also, the one‐bond ¹J(C_β,H_B) coupling constant is surprisingly greater than the ¹J(C_β,H_A) coupling constant in pyrroles under investigation, while in all known cases, there was a reverse relationship between these coupling constants. These spectral anomalies are substantiated by quantum chemical calculations. The calculations show that the amine nitrogen lone pair is removed from the conjugation with the π‐system of the pyrrole ring so that it is directed toward the H_B hydrogen. These factors are favorable to the emergence of the intramolecular C–H_B???N hydrogen bonding in the s‐cis(N) conformation. On the other hand, the spatial proximity of the sulfur to the H_B hydrogen provides an opportunity of the intramolecular C–H_B???S hydrogen bonding in the s‐cis(S) conformation. Presence of the hydrogen bond critical points as well as ring critical point for corresponding chelate ring revealed by a quantum theory of atoms in molecules (QTAIM) approach confirms the existence of the weak intramolecular C–H???N and C–H???S hydrogen bonding. Therefore, an unusual high‐frequency shift of the H_B signal and the increase in the ¹J(C_β,H_B) coupling constant can be explained by the effects of hydrogen bonding. Copyright © 2013 John Wiley & Sons, Ltd.     

Synthesis,Spectroscopy and Crystal Structures of Chiral Organic Ammonium Tetrathiometalates Showing N‐H···S and C‐H···S Interactions

The reaction of ammonium tetrathiometalate (NH₄)₂[MS₄] (M = W or Mo) with the R(+) or S(?) forms of the organic amine α‐methylbenzylamine [PhCH(CH₃)NH₂] results in the formation of the corresponding non‐centrosymmetric bis(α‐methylbenzylammonium) tetrathiometalate complexes [PhCH(CH₃)NH₃]₂[MS₄] (R‐ammonium M = W 1 ; R‐ammonium M = Mo 2 ; S‐ammonium M = W 3 , S‐ammonium M = Mo 4 ) which were characterized by elemental analysis, IR, Raman, UV‐Vis and CD spectra, X‐ray powder diffractometry and single crystal X‐ray crystallography. Compounds 1 ‐ 4 crystallize in the chiral space group P2₁ and constitute the first examples of structurally characterized chiral organic ammonium group VI tetrathiometalates. The structures of 1 ‐ 4 consist of two crystallographically independent chiral organic ammonium cations and a tetrahedral tetrathiometalate dianion. The N‐H···S and C‐H···S interactions between the anions and cations organise them such that the organic ammonium ions always point towards the S atoms of [MS₄]^2?.     

Supramolecular Networks Extended by N–H···O Interactions between Cu‐Benzimidazole Subunits and Keggin Anions

Three new 2D/3D supramolecular architectures derived from Cu‐organic subunits and Keggin anions, [Cu^II₂(biz)₈(HPMo^VI₁₀Mo^V₂O₄₀)(H₂O)₂] · 2H₂O ( 1 ), [Cu^I₄(biz)₈(SiW₁₂O₄₀)] · 2H₂O ( 2 ) and [Cu^I₂(dmbiz)₄(Hdmbiz)₂(SiW₁₂O₄₀)] ( 3 ) (biz = benzimidazole, dmbiz = 5, 6‐dimethyl benzimidazole), were obtained under hydrothermal conditions. Single crystal X‐ray diffraction analysis reveals that compound 1 has two kinds of [Cu^II(biz)₂]²⁺ cations, which are further extended by Keggin anions into a 2D (4, 8)‐connected supramolecular network by hydrogen bonding interactions. In compound 2 , four types of [Cu^I(biz)₂]⁺ subunits link the [SiW₁₂O₄₀]^4– anions to form a 3D (2, 6)‐connected supramolecular structure. Compound 3 shows a 3D supramolecular network with a NaCl‐type topology constructed by [Cu^I(dmbiz)₂]⁺ subunits, anions, and discrete [Hdmbiz]⁺ cations. Moreover, the electrochemical and photocatalytic properties of compounds 1 and 2 were investigated.     

Influence of the C—H· · ·N intramolecular interaction on the spatial structures and 1H and 13C NMR parameters of heteroaryl vinyl ethers and sulfides

A complete analysis of the ¹H and ¹³C spectra of the representative series of heteroaryl vinyl ethers and sulfides and heteroaryl styryl sulfides was carried out. The electronic and spatial structures of these compounds are discussed. It was shown that the C—H· · ·N intramolecular interactions in the investigated molecules influence significantly the spectral parameters and the conformational equilibrium. Copyright © 2003 John Wiley & Sons, Ltd.     

Cocrystals of 1,4‐diethynylbenzene with 1,3‐diacetylbenzene and benzene‐1,4‐dicarbaldehyde exhibiting strong nonconventional alkyne–carbonyl C—H…O hydrogen bonds between the components

Weak interactions between organic molecules are important in solid‐state structures where the sum of the weaker interactions support the overall three‐dimensional crystal structure. The sp‐C—H…N hydrogen‐bonding interaction is strong enough to promote the deliberate cocrystallization of a series of diynes with a series of dipyridines. It is also possible that a similar series of cocrystals could be formed between molecules containing a terminal alkyne and molecules which contain carbonyl O atoms as the potential hydrogen‐bond acceptor. I now report the crystal structure of two cocrystals that support this hypothesis. The 1:1 cocrystal of 1,4‐diethynylbenzene with 1,3‐diacetylbenzene, C₁₀H₆·C₁₀H₁₀O₂, (1), and the 1:1 cocrystal of 1,4‐diethynylbenzene with benzene‐1,4‐dicarbaldehyde, C₁₀H₆·C₈H₆O₂, (2), are presented. In both cocrystals, a strong nonconventional ethynyl–carbonyl sp‐C—H…O hydrogen bond is observed between the components. In cocrystal (1), the C—H…O hydrogen‐bond angle is 171.8 (16)° and the H…O and C…O hydrogen‐bond distances are 2.200 (19) and 3.139 (2) Å, respectively. In cocrystal (2), the C—H…O hydrogen‐bond angle is 172.5 (16)° and the H…O and C…O hydrogen‐bond distances are 2.25 (2) and 3.203 (2) Å, respectively.     

C—H···X (X = N,O, S) intramolecular interaction in 1‐vinyl‐2‐(2′‐heteroaryl)pyrroles as monitored by 1H and 13C NMR spectroscopy

¹H and ¹³C NMR spectroscopy of a series of 1‐vinyl‐2‐(2′‐heteroaryl)‐pyrroles were employed for the analysis of their electronic and spatial structure. The C—H···N intramolecular interaction between the α‐hydrogen of the vinyl group and the pyridine nitrogen, a kind of hydrogen bonding, was detected in 1‐vinyl‐2‐(2′‐pyridyl)pyrrole, which disappeared in its iodide methyl derivative. It was shown that this interaction is stronger than the C—H···O and C—H···S interactions in 1‐vinyl‐2‐(2′‐furyl)‐ and ‐2‐(2′‐thienyl)‐pyrroles. Copyright © 2001 John Wiley & Sons, Ltd.     

Influence of substitution on the strength and nature of CH···N hydrogen bond in XCCH···NH3 complexes

The effect of substitution on the strength and nature of CH···N hydrogen bond in XCCH···NH₃ (X = F, Cl, Br, OH, H, Me) and NCH···NH₃ complexes were investigated by quantum chemical calculations. Ab initio calculations were performed using MP2 method with a wide range of basis sets. With tacking into account the BSSE and ZPVE, the values of BEs decrease. Replacement of the nonparticipatory hydrogen atom of HCCH by the electronegative atoms (F, Cl, and Br), lead to the BEs increases. The BE corresponding to the replacement of the nonparticipatory hydrogen atom of HCCH by the OH and CH₃ groups decreases. A far greater enhancement of the interaction energy arises from replacement of HCCH by the more acidic HCN. The natural bond orbital analysis and the Bader's quantum theory of atoms in molecules were also used to elucidate the interaction characteristics of these complexes. The electrostatic nature of H‐bond interactions is predicted from QTAIM analysis. In addition, the relationship between the isotropic and anisotropic chemical shifts of the bridging hydrogen and binding energy of complexes as well as electron density at N···H BCPs were investigated. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

17O, 13C and 1H NMR and IR spectral study of crowded ketones: possible intramolecular C—H···O interactions

Unusual behaviour was observed in the study of the ¹⁷O, ¹³C and ¹H NMR and IR spectra of crowded (1‐adamantyl)alkyl ketones. As the size of the alkyl substituent is increased, abnormal upfield chemical shifts in the ¹³C NMR and downfield shifts in the ¹⁷O NMR of the carbonyl group, as well as downfield shifts in the ¹H NMR of the adamantyl γ'‐protons, are found. In the IR spectrum, the ν_C?O stretching frequencies of the ketones with bulky substituents show considerable red shifts. Correlation of the NMR shifts with the number of γ‐carbon atoms of the alkyl substituents and comparison with the IR results indicated that there is an intramolecular through‐space CH···O interaction in crowded ketones. This was supported by the results of ab initio calculations. Copyright © 2002 John Wiley & Sons, Ltd.     

C?H···N and C?H···O intramolecular hydrogen bonding effects in the 1H, 13C and 15 N NMR spectra of the configurational isomers of 1‐vinylpyrrole‐2‐carbaldehyde oxime substantiated by DFT calculations

According to the ¹H, ¹³C and ¹⁵N NMR spectroscopic data and DFT calculations, the E‐isomer of 1‐vinylpyrrole‐2‐carbaldehyde adopts preferable conformation with the anti‐orientation of the vinyl group relative to the carbaldehyde oxime group and with the syn‐arrangement of the carbaldehyde oxime group with reference to the pyrrole ring. This conformation is stabilized by the C? H···N intramolecular hydrogen bond between the α‐hydrogen of the vinyl group and the oxime group nitrogen, which causes a pronounced high‐frequency shift of the α‐hydrogen signal in ¹H NMR (～0.5 ppm) and an increase in the corresponding one‐bond ¹³C–¹H coupling constant (ca 4 Hz). In the Z‐isomer, the carbaldehyde oxime group turns to the anti‐position with respect to the pyrrole ring. The C? H···O intramolecular hydrogen bond between the H‐3 hydrogen of the pyrrole ring and the oxime group oxygen is realized in this case. Due to such hydrogen bonding, the H‐3 hydrogen resonance is shifted to a higher frequency by about 1 ppm and the one‐bond ¹³C–¹H coupling constant for this proton increases by ～5 Hz. Copyright © 2008 John Wiley & Sons, Ltd.     

Crystal and molecular structure of (r-2, c-4)-3-benzyl-2,4,5,5-tetraphenyl1,3-thiazolidine, intramolecular C–HS hydrogen bonds

The crystal and molecular structures of (r-2, c-4)-3-benzyl-2,4,5,5-tetraphenyl-1,3-thiazolidine are investigated showing the existence of C(sp²)–HS and C(sp²)–HN intramolecular contacts. The analysis of geometrical parameters shows that C–HS contacts may be treated as hydrogen bonds but C–HN do not fulfil the geometrical criteria of the existence of H-bonds. The B3LYP/6-311+G* single point calculations were performed to obtain wave functions applied later for ‘atoms in molecules’ (AIM) study. The analysis of bond critical points based on the Bader theory (AIM) supports the existence of intramolecular C–HS H-bonds.     

GIAO,DFT, AIM and NBO analysis of the N?H···O intramolecular hydrogen‐bond influence on the 1J(N,H) coupling constant in push–pull diaminoenones

In the series of diaminoenones, large high‐frequency shifts of the ¹H NMR of the N? H group in the cis‐position relative to the carbonyl group suggests strong N? H···O intramolecular hydrogen bonding comprising a six‐membered chelate ring. The N? H···O hydrogen bond causes an increase of the ¹J(N,H) coupling constant by 2–4 Hz and high‐frequency shift of the ¹⁵N signal by 9–10 ppm despite of the lengthening of the relevant N? H bond. These experimental trends are substantiated by gauge‐independent atomic orbital and density functional theory calculations of the shielding and coupling constants in the 3,3‐bis(isopropylamino)‐1‐(aryl)prop‐2‐en‐1‐one (12) for conformations with the Z‐ and E‐orientations of the carbonyl group relative to the N? H group. The effects of the N? H···O hydrogen‐bond on the NMR parameters are analyzed with the atoms‐in‐molecules (AIM) and natural bond orbital (NBO) methods. The AIM method indicates a weakening of the N? H···O hydrogen bond as compared with that of 1,1‐di(pyrrol‐2‐yl)‐2‐formylethene (13) where N? H···O hydrogen bridge establishes a seven‐membered chelate ring, and the corresponding ¹J(N,H) coupling constant decreases. The NBO method reveals that the LP(O) →σ*_{N? H} hyperconjugative interaction is weakened on going from the six‐membered chelate ring to the seven‐membered one due to a more bent hydrogen bond in the former case. A dominating effect of the N? H bond rehybridization, owing to an electrostatic term in the hydrogen bonding, seems to provide an increase of the ¹J(N,H) value as a consequence of the N? H···O hydrogen bonding in the studied diaminoenones. Copyright © 2010 John Wiley & Sons, Ltd.     

Diazabicyclo[2.2.2]octane-1,4-diium occluded in cubic anionic coordinated framework: the role of trifurcated hydrogen bonds of N–HO and C–HO

A unique coordinated molecular capsule compound is synthesized and characterized by X-ray diffraction. The compound crystallizes in cubic space group of Pa-3 with a=14.348(1), b=14.348(1), c=14.348(1) Å, V=2953.8(4) ų, Z=8. The diazabicyclo[2.2.2]octane-1,4-diium is occluded in the cubic anionic coordinated framework of K⁺ and (ClO₄)⁻ in a dimension of 7.174(1) Å, and assumes ordered feature. All of hydrogen atoms take parts in trifurcated hydrogen bonds of N–HO and C–HO type, respectively, the later being reported for the first time. The IR spectrum of the title compound shows significant shift of CH₂ vibrational bands, and are correlated with X-ray structural data.     

A theoretical structural analysis of the factors that affect 1JNH, 1hJNH and 2hJNN in N–H···N hydrogen‐bonded complexes

Calculations of ¹ J_NH, ^1h J_NH and ^2h J_NN spin–spin coupling constants of 27 complexes presenting N–H·N hydrogen bonds have allowed to analyze these through hydrogen‐bond coupling as a function of the hybridization of both nitrogen atoms and the charge (+1, 0, ? 1) of the complex. The main conclusions are that the hybridization of N atom of the hydrogen bond donor is much more important than that of the hydrogen bond acceptor. Positive and negative charges (cationic and anionic complexes) exert opposite effects while the effect of the transition states ‘proton‐in‐the‐middle’ is considerable. Copyright © 2008 John Wiley & Sons, Ltd.     

Synthesis,X‐ray characterization and density functional theory studies of N6‐benzyl‐N6‐methyladenine–M(II) complexes (M = Zn,Cd): The prominent role of π–π, C–H···π and anion–π interactions

We report the synthesis and X‐ray characterization of the N⁶‐benzyl‐N⁶‐methyladenine ligand (L) and three metal complexes, namely [Zn(HL)Cl₃]·H₂O ( 1 ), [Cd(HL)₂Cl₄] ( 2 ) and [H₂L]₂[Cd₃(μ‐L)₂(μ‐Cl)₄Cl₆]·3H₂O ( 3 ). Complex 1 consists of the 7H‐adenine tautomer protonated at N3 and coordinated to a tetrahedral Zn(II) metal centre through N9. The octahedral Cd(II) in complex 2 is N⁹‐coordinated to two N⁶‐benzyl‐N⁶‐methyladeninium ligands (7H‐tautomer protonated at N3) that occupy apical positions and four chlorido ligands form the basal plane. Compound 3 corresponds to a trinuclear Cd(II) complex, where the central Cd atom is six‐coordinated to two bridging μ‐L and four bridging μ‐Cl ligands. The other two Cd atoms are six‐coordinated to three terminal chlorido ligands, to two bridging μ‐Cl ligands and to the bridging μ‐L through N3. Essentially, the coordination patterns, degree of protonation and tautomeric forms of the nucleobase dominate the solid‐state architectures of 1 – 3 . Additionally, the hydrogen‐bonding interactions produced by the endocyclic N atoms and NH groups stabilize high‐dimensional‐order supramolecular assemblies. Moreover, energetically strong anion–π and lone pair (lp)–π interactions are important in constructing the final solid‐state architectures in 1 – 3 . We have studied the non‐covalent interactions energetically using density functional theory calculations and rationalized the interactions using molecular electrostatic potential surfaces and Bader's theory of atoms in molecules. We have particularly analysed cooperative lp–π and anion–π interactions in 1 and π⁺–π⁺ interactions in 3 .     

Synthesis and Characterization of (–)‐Menthyl Containing N‐Alkyl Cycloimmonium Salts

The reaction of 4‐phenyl‐2‐aminothiazole or 2‐amino pyridine with α‐bromo acetic (–)‐menthyl ester ( 2c ) yields new N‐alkyl cycloimmonium bromides ( 1c , 3 ) with the chiral (–)‐menthyl substituent, which were isolated and fully characterized by ¹H and ¹³C NMR spectroscopy for the first time. In addition, starting from 4‐phenyl‐2‐aminothiazole, two further N‐alkyl cycloimmonium bromides ( 1a , 1b ) were prepared. The molecular and crystal structures of all three thiazole derived N‐alkyl cycloimmonium bromides ( 1a – c ) were determined by single‐crystal X‐ray diffraction. In all cases the crystal structures are dominated by N–H ··· Br hydrogen bonds, which results in the formation of an extensive hydrogen bonded network in the crystal. Interestingly, in all structures S ··· Br^– distances shorter than the sum of the van der Waals radii are observed.     

Investigation of C–HX (X=N, O, S) intramolecular hydrogen bond in 1-vinyl-2-(2′-heteroaryl)pyrroles by ab initio calculations

The C–HX (X=N, O, S) intramolecular hydrogen bond between the α-hydrogen of the vinyl group and the corresponding heteroatom in the series of 1-vinyl-2-(2′-heteroaryl)pyrroles was examined by ab initio calculations at the B3LYP/6-311(d,p) level. It was shown that the C–HN hydrogen bond is stronger than the C–HO hydrogen bond and the latter is, in turn, stronger than the C–HS hydrogen bond. This conclusion is supported by calculations of ¹H NMR chemical shieldings.     

NMR study of O and N,O‐substituted 8‐quinolinol derivatives

The ¹H and ¹³C NMR spectral study of several biologically active derivatives of 8‐quinolinol have been made through extensive NMR studies including homodecoupling and 2D‐NMR experiments such as COSY‐45°, NOESY, and HeteroCOSY. Electron donating resonance and electron withdrawing inductive effect of several groups showed marked changes in chemical shifts of nuclei at the seventh positions of O‐substituted quinolinols (2–15). Although in N‐alkyl, 8‐alkoxyquinolinium halides (16–21), ring A rightly showed low frequency chemical shift values. Copyright © 2013 John Wiley & Sons, Ltd.     

Study of conformations and hydrogen bonds in the configurational isomers of pyrrole‐2‐carbaldehyde oxime by 1H, 13C and 15N NMR spectroscopy combined with MP2 and DFT calculations and NBO analysis

The ¹H, ¹³C and ¹⁵N NMR studies have shown that the E and Z isomers of pyrrole‐2‐carbaldehyde oxime adopt preferable conformation with the syn orientation of the oxime group with respect to the pyrrole ring. The syn conformation of E and Z isomers of pyrrole‐2‐carbaldehyde oxime is stabilized by the N? H···N and N? H···O intramolecular hydrogen bonds, respectively. The N? H···N hydrogen bond in the E isomer causes the high‐frequency shift of the bridge proton signal by about 1 ppm and increase the ¹J(N, H) coupling by ～3 Hz. The bridge proton shows further deshielding and higher increase of the ¹J(N, H) coupling constant due to the strengthening of the N? H···O hydrogen bond in the Z isomer. The MP2 calculations indicate that the syn conformation of E and Z isomers is by ～3.5 kcal/mol energetically less favorable than the anti conformation. The calculations of ¹H shielding and ¹J(N, H) coupling in the syn and anti conformations allow the contribution to these constants from the N? H···N and N? H···O hydrogen bondings to be estimated. The NBO analysis suggests that the N? H···N hydrogen bond in the E isomer is a pure electrostatic interaction while the charge transfer from the oxygen lone pair to the antibonding orbital of the N? H bond through the N? H···O hydrogen bond occurs in the Z isomer. Copyright © 2010 John Wiley & Sons, Ltd.     

Investigation of the resonance‐assisted hydrogen bond in model β‐diketones through localized molecular orbital analysis of the spin–spin coupling constants related to the O–H · · · O hydrogen bond

The resonance‐assisted hydrogen bond (HB) phenomenon has been studied theoretically by a localized molecular orbital (LMO) decomposition of the spin–spin coupling constants between atoms either involved or close to the O–H · · · O system of some β‐diketones and their saturated counterparts. The analysis, carried out at the level of the second‐order polarization propagator approximation, shows that the contributions in terms of LMO to the paramagnetic spin orbital and the spin dipolar Ramsey terms proof the importance of the delocalized π‐electron structure supporting the idea of the existence of the resonance‐assisted HB phenomenon phenomenon. The LMO contributions to the Fermi contact term indicate mainly the presence of the HB that may or not be linked to the π‐electrons. Copyright © 2014 John Wiley & Sons, Ltd.     

The nature and energy characteristics of intramolecular hydrogen bonds in crystals

The review concerns the results of systematic X-ray diffraction studies of the electron density distribution in the crystals of compounds with strong intramolecular hydrogen bonds N-H...O, O-H...O, O-H...N, and N-H...S. The advantages of the topological analysis of the electron density distribution function in the analysis of the nature and estimation of the H-bond energies directly from experimental data are discussed. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 1, pp. 1–14, January, 2006.