Oligo(p-phenylenevinylene)-peptide conjugates: synthesis and self-assembly in solution and at the solid-liquid interface

Two oligo(p-phenylenevinylene)-peptide hybrid amphiphiles have been synthesized using solid- and liquid-phase strategies. The amphiliphiles are composed of a pi-conjugated oligo(p-phenylenevinylene) trimer (OPV) which is coupled at either a glycinyl-alanyl-glycinyl-alanyl-glycine (GAGAG) silk-inspired beta-sheet or a glycinyl-alanyl-asparagyl-prolyl-asparagy-alanyl-alanyl-glycine (GANPNAAG) beta-turn forming oligopeptide sequence. The solid-phase strategy enables one to use longer peptides if strong acidic conditions are avoided, whereas the solution-phase coupling gives better yields. The study of the two-dimensional (2D) self-assembly of OPV-GAGAG by scanning tunneling microscopy (STM) at the submolecular level demonstrated the formation of bilayers in which the molecules are lying antiparallel in a beta-sheet conformation. In the case of OPV-GANPNAAG self-assembled monolayers could not be observed. Absorption, fluorescence, and circular dichroism studies showed that OPV-GAGAG and OPV-GANPNAAG are aggregated in a variety of organic solvents. In water cryogenic temperature transmission electron microscopy (cryo-TEM), atomic force microscopy (AFM), light scattering, and optical studies reveal that self-assembled nanofibers are formed in which the helical organization of the OPV segments is dictated by the peptide sequence.     

Self-assembled pi-nanotapes as donor scaffolds for selective and thermally gated fluorescence resonance energy transfer (FRET)

Self-assembled nanotapes of a few tailor-made oligo(p-phenylenevinylene)s (OPVs) have been prepared and used as supramolecular donor scaffold to study the fluorescence resonance energy transfer (FRET) to a suitable acceptor. In nonpolar solvents, FRET occurs with nearly 63-81% efficiency, exclusively from the self-assembled OPVs to entrapped Rhodamine B, resulting in the quenching of the donor emission with concomitant formation of the acceptor emission at 625 nm. The efficiency of FRET is considerably influenced by the ability of the OPVs to form the self-assembled aggregates and hence could be controlled by structural variation of the molecules, and polarity of the solvent. Most importantly, FRET could be controlled by temperature as a result of the thermally reversible self-assembly process. The FRET efficiency was significantly enhanced (ca. 90%) in a xerogel film of the OPV1 which is dispersed with relatively less amount of the acceptor (33 mol %), when compared to that of the aggregates in dodecane gel. FRET is not efficient in polar solvents due to weak self-organization of the chromophores. These results indicate that energy transfer occurs exclusively from the self-assembled donor and not directly from the individual donor molecules. The present study illustrates that the self-assembly of chromophores facilitates temperature and solvent controlled FRET within pi-conjugated nanostructures.     

Honeycomb self-assembled peptide scaffolds by the breath figure method

The self-assembly of molecules into desired architectures is currently a challenging subject for the development of supramolecular chemistry. Here we present a facile "breath figure" assembly process through the use of the self-assembled peptide building block diphenylalanine (L-Phe-L-Phe, FF). Macroporous honeycomb scaffolds were fabricated, and average pore size could be regulated, from (1.00±0.18) μm to (2.12±0.47) μm, through the use of different air speeds. It is indicated that the honeycomb formation is humidity-, solvent-, concentration-, and substrate-dependent. Moreover, water molecules introduced from "breath figure" intervene in the formation of hydrogen bonds during FF molecular self-assembly, which results in a hydrogen bond configuration transition from antiparallel β sheet to parallel β sheet. Meanwhile, as a result of the higher polarity of water molecules, the FF molecular array is transformed from laminar stacking into a hexagonal structure. These findings not only elucidate the FF molecule self-assembly process, but also strongly support the mechanism of breath figure array formation. Finally, human embryo skin fibroblast (ESF) culture experiments suggest that FF honeycomb scaffolds are an attractive biomaterial for growth of adherent cells with great potential applications in tissue engineering.     

Diverse Role of Solvents in Controlling Supramolecular Chirality

Supramolecular self-assembly stands for the spontaneous aggregation of small organic compounds or polymers into ordered structures at any scale. When being induced by inherent molecular chiral centers or ambient asymmetric factors, asymmetric spatial arrangement between building units shall occur, which is defined as supramolecular chirality. Except for molecular design, utilizing external stimulus factors to tune supramolecular chirality is a promising approach. In this Concept article, we particularly discuss the important role of solvents in manipulating the chirality of self-assembled systems. The impact of solvents on the chirality is generally based on three properties of solvents, i.e., chirality, polarity, and active coassembly with building blocks. Molecular self-assembly in chiral solvents could undergo the chirality transfer, exhibiting a chiral induction effect. Solvent polarity often determines intermolecular orientation. As a consequence, those building blocks with both polar and apolar segments might change their chirality depending on the solvent polarity. We elaborate the active participation of solvent molecules into ordered structures together with building blocks, where solvents and building blocks exhibit a coassembly manner. By specific treatments such as heating and cooling, solvents could be released or re-entrapped, allowing a smart control over supramolecular chirality. The solvent effect in manipulating two-dimensional chiral self-assemblies is then discussed. The perspective and future development in this research field are presented at last.     

Studies on the effect of solvents on self-assembled monolayers formed from organophosphonic acids on indium tin oxide

The preparation of self-assembled monolayers (SAMs) of organophosphonic acids on indium tin oxide (ITO) surfaces from different solvents (triethylamine, ethyl ether, tetrahydofuran (THF), pyridine, acetone, methanol, acetonitrile, dimethyl sulfoxide (DMSO), or water) has been performed with some significant differences observed. Cyclic voltammetry (CV), X-ray photoelectron spectroscopy (XPS), scanning tunneling microscopy (STM), and contact angle measurement demonstrated that the quality of SAMs depends critically on the choice of solvents. Higher density, more stable monolayers were formed from solvents with low dielectric constants and weak interactions with the ITO. It was concluded low dielectric solvents that were inert to the ITO gave monolayers that were more stable with a higher density of surface bound molecules because higher dielectric constant solvents and solvents that coordinate with the surface disrupted SAM formation.     

Molecular engineering of the polarity and interactions of molecular electronic switches

We have investigated and learned to control switching of oligo(phenylene ethynylene)s embedded in amide-containing alkanethiol self-assembled monolayers on Au{111}. We demonstrate bias-dependent switching of the oligo(phenylene ethynylene)s as a function of the interaction between the dipole moment of the oligo(phenylene ethynylene)s and the electric field applied between the scanning tunneling microscope tip and the substrate. We are able to invert the polarity of the switches by altering their design-inverting their dipole moments. For appropriately designed switches and matrix molecules, the conductance states are stabilized by intermolecular hydrogen bonding. These results further support the hypothesis that conductance switching in these molecules is due to hybridization changes at the molecule-substrate bonds due to tilting of the switch molecules.     

隧道结电场辅助下叔丁胺分子在Cu(111)表面跳跃(英文)

采用扫描隧道显微镜(STM)于78 K研究了单个叔丁胺分子在Cu(111)表面的横向跃迁现象.研究发现叔丁胺分子的跳跃几率随隧道电流的增加而线性增加,这表明该过程是单电子激发过程;在不同极性的隧道结电场作用下,叔丁基胺分子跳跃行为发生的几率不同,这种现象可以用电场辅助的扩散过程解释.在不同极性电场作用下叔丁胺分子在Cu(111)表面的吸附能和扩散势垒不同,从而表现出不同的跳跃几率.     

Chain-length effects on molecular conformation in and chirality of self-assembled monolayers of alkoxylated benzo[c]cinnoline derivatives on highly oriented pyrolytic graphite

Self-assembled structures of alkoxylated benzo[c]cinnoline derivatives prepared on highly oriented pyrolytic graphite at room temperature from their solutions in solvents such as 1-phenyloctane, toluene, and 1-octanol were studied by scanning tunneling microscopy. The alkoxy chain length markedly affected the molecular conformations in 2-dimensional assemblies of these derivatives. Long-chain derivatives adopted the trans conformations more often than cis, whereas short-chain derivatives took exclusively the cis conformations in the self-assembled monolayers (SAMs). For the derivatives of intermediate chain lengths, polymorphism existed, with four molecular conformations identified experimentally. Experimental evidence substantiated the formation of chiral SAM structures at the surface, which can be explained by the conformations of the molecules. The chirality was also affected by the chain length of the molecules. A simple method analyzing the angles between different domains in the SAMs was used to identify the molecular conformations and to predict their relative structures.     

Supramolecular structures of poly(γ-benzyl-L-glutamate) self-assembled on mica surface

This article reports the results of structural studies of poly (γ-benzyl-L -glutamate) (PBLG) layers self-assembled from dilute solutions in organic solvents on mica surface. Polarized dynamic light scattering and atomic force microscopy were used to study polymer properties in solutions and on the surface. The hierarchy of self-assembly from PBLG solutions in different solvents was investigated as a function of polymer concentration and solvent polarity. We show that the surface–polymer interaction is suppressed in polar solvents that is interpreted in terms of suppressed charge–dipole interaction. The transformation of the PBLG surface structure occurs upon addition of different amounts of trifluoroacetic acid to polymer solution in dioxane. Rigid-rod PBLG molecules experience rod–globular transition while assembling on nonmodified mica from the very dilute solutions. A scheme is proposed describing different stages of PBLG fibrogenesis on a charged surface. © 1998 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 36: 1567–1577, 1998     

A comprehensive study of self-assembled monolayers of anthracenethiol on gold: solvent effects, structure, and stability

The formation and molecular structure of self-assembled monolayers (SAMs) of anthracene-2-thiol (AnT) on Au(111) have been characterized by reflection adsorption infrared spectroscopy, thermal desorption spectroscopy, X-ray photoelectron spectroscopy, near-edge X-ray absorption spectroscopy, scanning tunneling microscopy, and low energy electron diffraction. It is demonstrated that highly ordered monolayer films are formed upon immersion, but their quality depends critically on the choice of solvents and rinsing conditions. The saturated monolayer is characterized by a closed packed arrangement of upright standing molecules forming a (2 x 4)rect unit cell. At about 450 K a partial desorption takes place and the remaining molecules form a dilute (4 x 2)-phase with an almost planar adsorption geometry, while further heating above 520 K causes a thermally induced fragmentation. According to their different densities both phases reveal very diverse chemical reactivities. Whereas the saturated monolayer is stable and inert under ambient conditions, the dilute phase does not warrant any protection of the sulfur headgroups which oxidize rapidly in air.     

Solvent effect on self-assembled structures of 3,8-bis-hexadecyloxy-benzo[c]cinnoline on highly oriented pyrolytic graphite

3,8-Bis-hexadecyloxy-benzo[c]cinnoline (BBC16) self-assembled into two structures at highly oriented pyrolytic graphite (HOPG) surface: one was formed by molecules with a V-like configuration (C2v symmetry) and the other by molecules with a Z-like configuration (C(s) symmetry). The self-assembled structures could be tweaked by the solvents used. In the self-assembled monolayers (SAMs) on HOPG, the BBC16 molecule adopted the V-like configuration in polar solvents and the Z-like configuration in nonpolar solvents. Moreover, the solvent viscosity, solvent dissolvability of BBC16, and substrate temperature also played some roles in tuning the two-dimensional self-assembled structures.     

Self-assembly of manganese phthalocyanine on Pb(111) surface: a scanning tunneling microscopy study

The self-assembled structure of submonolayer manganese phthalocyanine (MnPc) on Pb(111) surface is investigated by using low-temperature scanning tunneling microscopy (STM). A "holelike" superlattice, which is superimposed on the self-assembled nearly quadratic network, is observed. High resolution STM images reveal that there are two distinct azimuthal orientations of MnPc molecules. It is found that by taking the two different orientations the self-assembly can further be optimized energetically by maximizing intermolecular orbital overlapping. It is this intralayer energy minimization process that leads to the characteristic holelike superlattice.     

Solvent effects on two-dimensional molecular self-assemblies investigated by using scanning tunneling microscopy

Self-assembly structures investigated by using scanning tunneling microscopy (STM) at liquid/solid interface have been a topic of broad interest in surface science, molecular materials, molecular electronics. The delicate balance among the adsorbate–solvent, adsorbate–adsorbate, solvent–solvent interactions would give rise to the coadsorption or competitive deposition of solvent with adsorbate. The solvents at the interface enable dynamic absorption and desorption of the adsorbates leading to the controlled assembly of the molecular architectures. The solvent-induced polymorphism, coadsorption effect, as well as solvent effects on chirality and electronic structures are discussed in this report in view of the polarity, solubility and viscosity of the solvent, the hydrogen bonding formation between solute and solvent, and the solvophobic and solvophilic effects. The systematic studies on the solvent effects would shed light on better control of assembly structures for design of new molecular materials and molecular electronics.     

Isolated supramolecules on surfaces studied with scanning tunneling microscopy

To date, supramolecular chemistry is an ever growing research field owing to its crucial role in molecular catalysis, recognition, medicine, data storage and processing as well as artificial photosynthetic devices.Different isolated supramolecules were prepared by molecular self-assembly on surfaces. This review mainly focuses on supramolecular aggregations on noble metal surfaces studied by scanning tunneling microscopy, including dimers, trimers, tetramers, pentamers, wire-like assemblies and Sierpin′ ski triangular fractals. The variety of self-assembled structures reflects the subtle balance between intermolecular and molecule–substrate interactions, which to some extent may be controlled by molecules, substrates and the molecular coverage. The comparative study of different architectures helps identifying the operative mechanisms that lead to the structural motifs. The application of these mechanisms may lead to novel assemblies with tailored physicochemical properties.     

Self-assembled monolayers of clamped oligo(phenylene-ethynylene-butadiynylene)s

Rigid rod oligo(phenylene-ethynylene-butadiynylene)s (oPEBs), "half-rings" of two rigid rods connected via a molecular clamp unit, and shape-persistent macrocycles (cyclic "half-ring dimers") are synthesized and their self-assembled monolayers (SAMs) are investigated by scanning tunneling microscopy (STM) at the interface of 1,2,4-trichlorobenzene (TCB)/highly oriented pyrolytic graphite (HOPG). The results are important for the design of molecular building blocks for two-dimensional nanoscale architectures on solid surfaces.     

Competition and coadsorption of di-acids and carboxylic acid solvents on HOPG

The self-assemblies of di-acids HOOC-(CH(2))(n)-COOH (n = 20, 18, 16, 14, 12, 10) in three solvents hexanoic acid, octanoic acid, and decanoic acid on highly oriented pyrolytic graphite (HOPG) were studied with scanning tunneling microscopy (STM). In the solvent hexanoic acid, solvent molecules coadsorb with HOOC-(CH(2))(n)-COOH (n = 20, 18, 16) via formation of hydrogen bonds. The solvent octanoic acid coadsorbs with HOOC-(CH(2))(n)-COOH (n = 20, 18). Decanoic acid only coadsorbs with HOOC-(CH(2))(20)-COOH. In each solvent, the trend of coadsorption between solvent molecules and di-acid molecules decreases with decreasing chain-length of di-acid molecules. These systematic investigations suggest that coadsorption of solvent molecules with di-acid solute molecules is mainly dependent on the relative hydrogen-bond densities in the formed monolayer. This is consistent with the maximization of adsorption heat of the self-assembled monolayers of di-acids dissolved in solvents of carboxylic acids.     

Controlled metalation of self-assembled porphyrin nanoarrays in two dimensions.

We report a bottom-up approach for the fabrication of metallo-porphyrin compounds and nanoarchitectures in two dimensions. Scanning tunneling microscopy and tunneling spectroscopy observations elucidate the interaction of highly regular porphyrin layers self-assembled on a Ag(111) surface with iron monomers supplied by an atomic beam. The Fe is shown to be incorporated selectively in the porphyrin macrocycle whereby the template structure is strictly preserved. The immobilization of the molecular reactants allows the identification of single metalation events in a novel reaction scheme. Because the template layers provide extended arrays of reaction sites, superlattices of coordinatively unsaturated and magnetically active metal centers are obtained. This approach offers novel pathways to realize metallo-porphyrin compounds, low-dimensional metal-organic architectures and patterned surfaces which cannot be achieved by conventional means.     

Nature of non-radiative processes involved in the excited state of 9-cyanoanthracene in presence of 2-methylindole/2-methylindoline quenchers. A laser flash photolysis study to reveal the medium effects

By using steady state and time-resolved (laser flash photolysis and single photon counting) spectroscopic techniques the quenching of the lowest excited singlet (S1) state of 9-cyanoanthracene (9CNA) by the donors (quenchers) 2-methylindole (2MI) and 2-methylindoline (2MIN) in solvents of different polarity has been studied. Both the transient absorption, by laser flash photolysis technique, and photobleaching measurements were made at the ambient temperature both in non-polar n-heptane (NH) and highly polar acetonitrile (ACN) solvents. The photobleaching efficiency (alpha) was found to depend significantly on the polarity of surrounding solvents and also on the molecular structures of the quenchers. In NH the values of alpha are found to be larger than the corresponding values observed in ACN for both 2MI and 2MIN which possess highly reactive H atom bound to the heterocyclic N atom. Following the results obtained from the transient absorption spectra of the present donor-acceptor molecules in the different polarity solvents, a scheme describing the overall reaction mechanisms of the different photoreactions involved has been proposed. The probable causes for the changes observed in the mechanisms of the photoreactions involved in the cases of 2MI and 2MIN donors have been discussed in the light of their canonical structures.     

Photoionization versus photoheterolysis of all-trans-retinol. The effects of solvent and laser radiation intensity

The time-resolved formation of the retinyl carbocation from all-trans-retinol and all-trans-retinol acetate was studied by use of picosecond flash photolysis. From both precursors, the retinyl cation is produced by heterolytic C-O bond cleavage in solvents of medium polarity (acetonitrile, tetrahydrofuran, propanol with Reichardt polarity parameter ET(N) approximately 0.5) and high polarity (EtOH, MeOH, TFE, HFIP, ET(N) > 0.6) during the laser pulse (< or =5 ps) where its lifetime is >10 ns. The absorption maximum of the cation at early times (t < 100 ps) is at lambda = 590-600 nm; it shifts to shorter wavelengths (Deltalambda = 5-10 nm) within 1-10 ns. This spectral shift is suggested to be due to contact ion pair --> solvent-separated ion pair --> free-ion transformation. The quantum yield of cation formation phi(cat) is independent of excitation wavelength (213, 266 or 355 nm). Photoheterolysis proceeds via a one-quantum process. In chlorinated solvents, i.e. n-BuCl, 1,2-dichloroethane, chloroform or CCl(4), formation of the retinol radical cation (which is characterized by a peak at 610 nm and further absorption maxima at approximately 840 and approximately 940 nm) by intermolecular electron transfer to the solvent molecules was detected. The radical cation lifetime in all these solvents is 1.5-2 ns, except for CCl(4) where it is 0.25 ns. The formation of the radical cation or cation was not detected in the low polarity solvents: cyclohexane, hexane, dioxane and p-xylene. However, in solvents of medium and high polarity, at high radiation intensities the radical cation may form in addition to the cation (as a result of two-quantum ionization). DFT calculations confirm our experimental results. The rate of retinol S(1) depopulation (k = 0.3-1 x 10(9) s(-1)) is almost independent of the solvent polarity in the range from cyclohexane to methanol. In highly polar solvents (ET(N) > 0.9) the rate increases to (0.5-5) x 10(10) s(-1).     

β-联碳酰基类衍生物有序自组装膜的STM研究

在大气条件下, 利用扫描隧道显微镜研究了四个β-联碳酰基类衍生物在高定向裂解石墨(HOPG)表面的自组装结构. 研究分子的结构中均包含π电子共轭体系和烷基链. 实验研究了分子结构对自组装结构的影响, 并利用分子结构的变化实现了自组装膜结构的调控. 结果表明, 在甲苯溶剂中制备的这些自组装结构均长程有序, 分子间氢键和偶极相互作用是影响自组装膜结构变化的重要因素.