A rapid and highly selective method for the estimation of pyro-, tri- and orthophosphates

A rapid, highly selective and simple method has been developed for the quantitative determination of pyro-, tri- and orthophosphates. The method is based on the formation of a solid complex of bis(ethylenediamine)cobalt(III) species with pyrophosphate at pH 4.2-4.3, with triphosphate at pH 2.0-2.1 and with orthophosphate at pH 8.2-8.6. The proposed method for pyro- and triphosphates differs from the available method, which is based on the formation of an adduct with tris(ethylenediamine)cobalt(III) species. The complexes have the composition [Co(en)(2)HP(2)O(7)]4H(2)O and [Co(en)(2)H(2)P(3)O(10)]2H(2)O, respectively. The precipitation is instantaneous and quantitative under the recommended optimum conditions giving 99.5% gravimetric yield in both cases. There is no interferences from orthophosphate, trimetaphosphate and pyrophosphate species in the triphosphate estimation up to 5% of each component. The efficacy of the method has been established by determining pyrophosphate and triphosphate contents in various matrices. In the case of orthophosphate, the proposed method differs from the available methods such as ammonium phosphomolybdate, vanadophosphomolybdate and quinoline phosphomolybdate, which are based on the formation of a precipitate, followed by either titrimetry or gravimetry. The precipitation is instantaneous and the method is simple. Under the recommended pH and other reaction conditions, gravimetric yields of 99.6-100% are obtainable. The method is applicable to orthophosphoric acid and a variety of phosphate salts.     

The analysis of solutions containing mixtures of linear sodium phosphates

A new method for analysis of sodium ortho-, pyro-, and triphosphate is reported. This procedure consists of the measurement of three values which permit a simultaneous solution of three independent equations, yielding the relative amounts of linear phosphates present in the mixture. The measured quantities were: 1) pyrophosphate, gravimetrically determined as zinc pyrophosphate, reprecipitated at 19° and at a pH of 4.0 – 4.5, 2) silver phosphate, determined by a conductance titration at 12°, of standardized silver nitrate solution, and 3) total phosphate, determined after complete hydrolysis to orthophosphate in hot acid solution.     

Analysis of mixtures of the condensed phosphates by ion-exchange chromatography: Mixtures of ortho-, pyro-, tri-, tiltra-, trimeta-, and tetrametaphosphates and graham's salt

When a mixture of condensed phosphates is cluted on a column of Dowex-1 with various concentrations of potassium chloride buffered at pH 5.00, appropriate fractions of the cluate contain (1) orthophosphate, (2) pyrophosphate, (3) triphosphate, (4) a mixture of tetra- and tetrametaphosphates, and (5) trimetaphosphate. A similar elution with eluants buffered at pH 9.00 yields eluate fractions containing (1) a mixture of ortho-, pyro-, tri-, and tetraphosphates, (2) tetrametaphosphate, and (3) trimetaphosphate. In both elutions, Graham's salt is retained on the column until it is treated with hydrochloric acid. Thus two elutions serve for the determination of the seven constituents.     

Polarographic determination of thiamine and its monophosphate and pyrophosphate esters

A d.c. polarographic method for estimating thiamine and its monophosphate and pyrophosphate esters in the same sample is proposed. The anodic waves of thiamine and its monophosphate and pyrophosphate appear at E_{$\text{1}\text{2}$} values of —0-36 to —0.4 V vs. s.c.e., at pH higher than 9.0, 9.3 and 9.6, respectively. Careful adjustment of pH in separate aliquote to pH 9.0–9.3, 9.3–9.6, and >9.6 allows measurement of waves corresponding to thiamine, thiamine and its monophosphate, and thiamine and its monophosphate and pyrophosphate, respectively. Samples containing thiamine disulfide can also be analysed.     

Anionic Lead Complexes on the Solid Phase of Fibrous Filled Materials in the Reaction with 4(2-Pyridylazo)resorcinol

The influence of the nature of anions (iodide, bromide, thiosulfate, pyrophosphate, tartrate, and acetate) in the anionic lead complex adsorbed on a solid phase of a fibrous sorbent filled with the AV-17 anion exchanger on the color reaction between lead and 4-(2-pyridylazo)resorcinol (PAR) was studied by diffuse reflectance spectrometry. The influence of anions on the complexation of lead with PAR on the solid phase was discussed for different types of the color reaction. It was demonstrated that the reactions with iodide at pH 5–10 and with thiosulfate at pH 10 are significant in the determination of lead as three-component complexes on the support. In the presence of other anions, lead ions do not react with PAR on the AV-17 solid phase.     

FeIII–Salen-Based Probes for the Selective and Sensitive Detection of E450 in Foodstuff

Inorganic pyrophosphate (PPi) is considered as a diagnostic marker for various diseases such as cancer and vascular calcification. PPi also plays an important preservative role as an additive E450 in foodstuff. In this work, a selective Fe^III–salen-based probe for PPi is described; this probe disassembles in the presence of the target analyte into its molecular blocks, 1,2-propanediamine and 3-chloro-5-formyl-4-hydroxybenzenesulfonic acid. The latter signaling unit leads to a fluorometric response. Compared with a related prototype, the new complex shows a 2.3-times stronger emission at 500 nm and a 155-times better selectivity of PPi over adenosine triphosphate (ATP). Importantly, the new probe was successfully applied for detecting E450 in foodstuff.     

Relationships of lignosulfonate adsorption onto the zinc sulfide surface

Low-molecular-mass lignosulfonates (M _w = 9250 amu) are adsorbed more strongly onto ZnS from neutral solutions (pH 4.5–4.8), and high-molecular-mass lignosulfonates (M _w = 46300 rpm), from acid solutions (pH 1.4–1.5). The sorption of the low-molecular-mass sample at pH 1.5 is affected by competing sorption of the solvent (Н₂SO₄). The lignosulfonate samples studied are adsorbed onto zinc sulfide by the chemisorption mechanism.     

Effect of Pyrophosphate Ions on the Mechanism of Discharge–Ionization of Copper in Acid Sulfate Solutions

The acceleration of the electrodeposition and anodic dissolution of copper in acid sulfate solutions, caused by sodium pyrophosphate, is found to be due to a chemical heterogeneous stage, which involves an adsorbed pyrophosphate ion (probably, H₂P₂O₇ ^2–). The assumption about the presence of a surface complex on the surface of copper is substantiated. As follows from adsorption isotherms, obtained for strongly acid (to 2 M H₂SO₄) solutions from anodic Tafel plots, the effect of the acid concentration on the rate of the discharge–ionization of copper is caused by its effect on the surface coverage by the adsorbate. Measurements of the quasi-equilibrium potential of the freshly renewed surface of copper confirm the assumption about the inhibiting of the surface diffusion of adsorbed atoms by adsorbed pyrophosphate.     

Effects of copolymer concentration and chain length on the pH-responsive behavior of diblock copolymer micellar films

The pH-responsive behavior of adsorbed diblock copolymer films of PDMA-PDEA (poly(2-(dimethylamino)ethyl methacrylate)-block-poly(2-(diethylamino)ethyl methacrylate)) on silica has been characterized using a quartz crystal microbalance with dissipation monitoring (QCM-D), an optical reflectometer (OR) and an atomic force microscope (AFM). The copolymer was adsorbed at pH 9 from various copolymer concentrations; QCM-D measurements indicate that the level of desorption when rinsed at pH 9 depends on the initial copolymer concentration. The adsorbed films produced at pH 9 generally have low charge densities; adjusting the solution pH to 4 results in a significant protonation of the constituent copolymers and a related interfacial structural change for the copolymer film. OR studies show no significant change during pH cycling, while QCM-D measurements indicate that the adsorbed mass and dissipation alter dramatically in response to the solution pH. The difference between the QCM-D adsorbed masses and dissipation values at pH 4 and 9 were found to be dependent on the initial copolymer concentration. This is due to differences in the initial conformations within the adsorbed copolymer layers at pH 9. The effect of the PDMA chain length on the pH-responsive behavior has also been studied; both the QCM-D adsorbed mass and dissipation of PDMA54-PDEA24 (shorter PDMA block) at pH 4 and 9 were observed to be greater than those of PDMA9X-PDEA2Y (longer PDMA block). This suggests that the normal extension of the adsorbed PDMA54-PDEA24 copolymer films is more significant than that of the PDMA9X-PDEA2Y films on silica.     

Synthesis, DNA polymerase incorporation, and enzymatic phosphate hydrolysis of formamidopyrimidine nucleoside triphosphates

The nucleoside triphosphates of N6-(2-deoxy-alpha,beta-d-erythro-pentofuranosyl)-2,6-diamino-4-hydroxy-5-formamidopyrimidine (Fapy.dGTP) and its C-nucleoside analogue (beta-C-Fapy.dGTP) were synthesized. The lability of the formamide group required that nucleoside triphosphate formation be carried out using an umpolung strategy in which pyrophosphate was activated toward nucleophilic attack. The Klenow fragment of DNA polymerase I from Escherichia coli accepted Fapy.dGTP and beta-C-Fapy.dGTP as substrates much less efficiently than it did dGTP. Subsequent extension of a primer containing either modified nucleotide was less affected compared to when the native nucleotide is present at the 3'-terminus. The specificity constants are sufficiently large that nucleoside triphosphate incorporation could account for the level of Fapy.dG observed in cells if 1% of the dGTP pool is converted to Fapy.dGTP. Similarly, polymerase-mediated introduction of beta-C-Fapy.dG could be useful for incorporating useful amounts of this nonhydrolyzable analogue for use as an inhibitor of base excision repair. The kinetic viability of these processes is enhanced by inefficient hydrolysis of Fapy.dGTP and beta-C-Fapy.dGTP by MutT, the E. coli enzyme that releases pyrophosphate and the corresponding nucleoside monophosphate upon reaction with structurally related nucleoside triphosphates.     

Flow-injection determination of inorganic pyrophosphate with use of an enzyme thermistor containing immobilized inorganic pyrophosphate

Inorganic pyrophosphate immobilized on controlled-pore glass is used in a simple flow enzyme thermistor system. The heat produced in hydrolysis of pyrophosphate is enhanced. by using Tris-HCl buffer, pH 7.2, containing 1 mM magnesium chloride, as carrier stream. The calibration graph is linear for 0.1–20 mM pyrophosphate; 500 assays are possible without loss of enzyme activity. For 0.5-ml injections of 10 mM pyrophosphate, the relative standard deviation was 2.0% (n=30). A single determination takes 6 min. Calcuim and strontium interfere.     

Conformational analysis of three pyrophosphate model species: Diphosphate,methyl diphosphate,and triphosphate

Whereas theoretical investigations of the energetic origin of hydrolyzing a pyrophosphate linkage abound, few studies have focused on the energetics of the rotation of this linkage. This less-studied property of the pyrophosphate linkage was investigated here by use of ab initio calculations to characterize the conformational space of three model species of pyrophosphate anions: diphosphate (P₂O), methyl diphosphate (CH₃P₂O), and triphosphate (P₃O). By carefully selecting conformationally distinct rotational isomers of the three model compounds, their potential surfaces were thoroughly explored. In addition to showing that a terminal phosphate group is indeed very flexible in accordance with the general perception of free rotation, a number of intriguing features of this linkage emerged from the ab initio calculations, which include an influential sp3-hybridized C HO intramolecular hydrogen bond in methyl diphosphate, and a highly restricted rotational space pertaining to the central pyrophosphate linkage of the triphosphate anion. These ab initio findings were then evaluated by, and proved insightful in, follow-up examinations of experimentally determined complex structures of proteins and their dinucleotide or adenine and guanine triphosphate ligands. © 1999 John Wiley & Sons, Inc. J Comput Chem 20: 1702–1715, 1999     

Characterizing the pH-responsive behavior of thin films of diblock copolymer micelles at the silica/aqueous solution interface

The pH-responsive behavior of cationic diblock poly(2-(dimethylamino)ethyl methacrylate)-block-poly(2-(diethylamino)ethyl methacrylate) copolymer micelles adsorbed at the silica/aqueous solution interface has been characterized. The micellar morphology of this copolymer, initially adsorbed at pH 9, can be dramatically altered by lowering the solution pH. The original micelle-like morphology of the adsorbed copolymer chains at pH 9 completely disappears as the pH is decreased to 4, and a brush-like layer structure is produced. This change results from protonation of the copolymer chains: the subsequent electrostatic repulsions within the film drive the copolymer chains to expand into the aqueous phase. Returning the solution pH from 4 to 9 causes this brush-like layer to collapse, with atomic force microscopy images suggesting degradation of the film. Hence, the pH-responsive behavior of the copolymer film exhibits irreversible morphological changes. Measurements of the adsorbed/desorbed amounts of the copolymer film were conducted using both a quartz crystal microbalance with dissipation monitoring (QCM-D) and optical reflectometry (OR). After an initial rinse at both pH values, the OR adsorbed mass becomes almost constant during subsequent pH cycling, whereas the corresponding QCM-D adsorbed mass changes significantly but reversibly in response to the solution pH. Since the QCM-D measures a bound mass that moves in tandem with the surface, the discrepancy with the OR data is due to changes in the amount of bound water in the copolymer film as a result of the pH-induced changes in surface morphology. The larger effective mass observed at pH 4 suggests that the brush-like layer contains much more entrapped water than the micellar films at pH 9. The pH dependence of the contact angle of the adsorbed film is consistent with the changes observed using the other techniques, regardless of whether the solution pH is altered in situ or the aqueous solution is completely replaced. In fact, comparison of these two approaches provides direct evidence of the exposure of adsorbed micelle core blocks to the solution during pH cycling and the concomitant impact upon all the other measurements.     

Anthracene-Based Cyclophanes with Selective Fluorescent Responses for TTP and GTP: Insights into Recognition and Sensing Mechanisms

Three anthracene-based cyclophanes were synthesized and their binding properties towards nucleoside triphosphates were studied. A new polycyclic amine derived from dearomatized anthracene was identified as a major side product in the cyclization reaction between 9,10-anthracenedicarboxaldehyde and diethylenetriamine. Its structure was determined by single-crystal X-ray analysis. The cyclophanes were found to form 1:1 complexes with all nucleoside triphosphates as well as with pyrophosphate in a buffered aqueous solution at pH 6.2. A turn-on fluorescence response was observed for all nucleotides except for GTP, which demonstrated strong fluorescence quenching. The strongest turn-on fluorescence was observed for the largest receptor 3 in the presence of thymidine triphosphate (TTP). Based on the NMR and fluorescence experiments, two major binding modes for nucleotide complexes were identified.     

Effect of pH on the adsorption and activity of creatine phosphokinase

The combination of in situ ellipsometry with atomic force microscopy in the liquid for the study of adsorption of creatine phosphokinase (CPK) onto silicon wafers was shown for the first time. The thickness, adsorbed amount, and topographic information of the adsorbed CPK layers were obtained under different pH conditions. The thickness values of adsorbed CPK layer determined by both techniques were in excellent agreement. At pH 4, CPK monomers present in solution adsorb, forming a very thin (approximately 0.8 nm) layer, indicating CPK unfolding. Upon increasing the pH to 6.8, the adsorbed layer is composed of a mixture of CPK dimers (native structure) and intermediates, increasing the film thickness (approximately 2.4 nm). At pH 9, CPK dimers form monolayers with the highest thickness (approximately 4.0 nm). The nature of interactions between CPK and Si wafers associated with the hydration force seems to control the degree of CPK unfolding upon adsorbing. The enzymatic activity of free CPK and of adsorbed CPK at pH 4, pH 6.8, and pH 9 was measured as a function of pH. In comparison to free CPK in solution, adsorbed CPK presented a shift of the optimal pH from 6.8 toward alkaline pH.     

Oxidation of 3‐(3,4‐dihydroxy phenyl)‐l‐alanine (levodopa) and 3‐(3,4‐dihydroxy phenyl)‐2‐methyl‐l‐alanine (methyl dopa) by manganese(III) in pyrophosphate media: Kinetic and mechanistic study

Manganese(III) (Mn(III)) has been stabilized in weakly acidic solution by means of pyrophosphate and the nature of the complex was elucidated spectrophotometrically. Stoichiometry of Mn(III)‐oxidation of levodopa and methyl dopa in pyrophosphate medium was established in the pH range 2.5–4.0 by iodometric and spectrophotometric methods. The reaction shows a distinct variation in kinetic order with respect to [Mn(III)], a first‐order dependence in the pH range 1.9–2.6, decreasing to fractional order above pH 3. Other common features include first‐order dependence on [dopa], positive fractional order dependence on [H⁺], and inverse first‐order dependence on [Mn(III)] in the pH range studied. The effects of varying ionic strength and solvent composition were studied. Added ions such as SO₄^2? and ClO₄^? alter the reaction rate, probably due to the change in the formal redox potential of Mn(III)–Mn(II) couple because of the changes in coordination environment of the oxidizing species. Evidence for the transient existence of the free radical intermediate is given. Cyclic voltametric sensing of levodopa and methyl dopa has ruled out the formation of dopaquinones as oxidation products in the pH range studied. Activation parameters have been evaluated using the Arrhenius and Erying plots. Mechanisms consistent with the kinetic data have been proposed and discussed. These studies are expected to throw some light on dopa metabolism. © 2001 John Wiley & Sons, Inc. Int J Chem Kinet 33: 449–457, 2001     

Behaviour in solution of piezoelectric quartz crystals coated with poly(vinylpyridines). Application to the determination of copper(II)

Poly(2-vinylpyridine) or poly(4-vinylpyridine) coated on a piezoelectric quartz crystal adsorbed copper, thus decreasing the oscillation frequency. The bound copper could be removed by EDTA solution. Poly(4-vinylpyridine) is recommended to determine copper (5–35 μM) in a maleate buffer at pH 6.6 flowing over the coated crystal for 5 min. Iron(III) and cadmium interfered.     

酪氨酸在活性炭/水界面上的吸附

研究了不同pH值介质中酪氨酸在活性炭上的吸附行为.结果表明,pH值4.2～6.1时吸附量较大,在酪氨酸的等电点时吸附量最大;酪氨酸被吸附的主要形式是兼性离子;酪氨酸离子靠VanderWaals力吸附在活性炭/水界面上.用介质pH值对酪氨酸溶解度的影响和活性炭的表面性质解释了实验结果     

Highly effective fluorescent and colorimetric sensors for pyrophosphate over H2PO4- in 100% aqueous solution

[Structure: see text]. This study demonstrated that Zinpyr-1*Zn2+ acts as a fluorescent and colorimetric sensor for pyrophosphate at pH 7.4. In addition, Zinpyr-1*Cu2+ and DIARB-1*Cu2+ complexes were found to act as selective fluorescent sensors for pyrophosphate. Furthermore, the chemosensors Zinpyr-1*Zn2+ and Zinpyr-1*Cu2+ show highly selective and ratiometric fluorescence changes for pyrophosphate compared with H2PO4-.     

A general RNA-capping ribozyme retains stereochemistry during cap exchange

Numerous natural and artificial ribozymes have been shown to facilitate reactions that invert stereochemistry. Here, we demonstrate that an RNA-capping ribozyme retains stereochemistry at a phosphorus reaction center. The ribozyme synthesizes a broad range of 5'-5' RNA caps by exchanging phosphate groups around the alpha-phosphate found at the 5' terminus of the ribozyme. A ribozyme prepared with an Rp adenosine(5')alpha-thiotetraphosphate cap was found to exchange this cap for an Rp 4-thiouridine(5')alpha-thiotetraphosphate cap when incubated with 4-thiouridine triphosphate. The same Rp capped construct, when incubated with [gamma-(32)P]-ATP, exchanged the unlabeled ATP for a radiolabeled one while maintaining the same stereoconfiguration. In contrast, ribozymes prepared with an Sp cap failed to react even in the presence of thiophilic metal ions such as manganese. The kinetics of capping was also unusual as compared to inverting ribozymes. When the ribozyme was prepared with a triphosphate, capping was found to follow Michaelis-Menten-type kinetics even though the rate of pyrophosphate release was completely independent of nucleotide substrate concentration. Interestingly, the rate of capping and hydrolysis, when summed, was found to be indistinguishable from the rate of pyrophosphate release, indicating that an early rate-limiting step precedes both capping and hydrolysis. Together the retention of stereochemistry and kinetics imply that capping utilizes two inverting chemical steps that are separated by the transient formation of a rate-limiting covalent intermediate. As all protein enzymes that mediate similar capping reactions utilize a covalent intermediate, chemical necessity may have strongly guided the evolution of both protein and RNA-capping catalysts.