Boron,carbon, and aluminum supertetrahedral graphane analogues

The electronic and spatial structures of carbon, boron, and aluminum supertetrahedrane models of graphane have been studied by means of density functional theory methods in the supermolecular approximation (B3LYP/6-311G(df,2p)) and with imposing periodic boundary conditions (PBEPBE/6-311G (d,p), HSEH1PBE/6-311G (d,p)). Calculations predict that pure boron and aluminum structures are narrow-gap semiconductors. For supertetrahedral carbon graphane, calculations predict properties intermediate between the semiconductor and insulator properties. All bonds in the carbon system are two-center two-electron (2с–2е), while for the boron system, intratetrahedrane bonds are three-center two-electron (3с–2е), and intertetrahedrane bonds are common two-center two-electron bonds (2с–2е).     

Comparative conventional and microwave assisted synthesis of heterocyclic oxadiazole analogues having enzymatic inhibition potential

A comparative microwave assisted and conventional synthetic strategies were applied to synthesize heterocyclic 1,3,4-oxadiazole analogues as active anti-enzymatic agents. Green synthesis of compound 1 was achieved by stirring 4-methoxybenzenesulfonyl chloride ( a ) and ethyl piperidine-4-carboxylate ( b ). Compound 1 was converted into respective hydrazide ( 2 ) by hydrazine and then into 1,3,4-oxadiazole ( 3 ) by CS₂ on reflux. The electrophiles, N-alkyl/aralkyl/aryl-2-bromopropanamides ( 6a–p ) were synthesized and converted to N-alkyl/aralkyl/aryl-2-propanamide derivatives ( 7a–p ) by reaction with 3 under green chemistry. Microwave assisted method was found to be effective relative to conventional method. ¹³C-NMR, ¹H-NMR and IR techniques were availed to corroborate structures of synthesized compounds and then subjected to screening against lipoxygenase (LOX), α-glucosidase, acetylcholinesterase (AChE) and butyrylcholinesterase (BChE) enzymes. A number of compounds presented better potential against these enzymes. The most active compounds against LOX and α-glucosidase enzymes were subjected to molecular docking study to explore their interactions with the active sites of the enzymes.     

Synthesis,stereochemistry and anti-tetrabenazine activity of bicyclo analogues of 2-phenylmorpholines

A series of bicyclo analogues of several 2-phenylmorpholines were synthesized and tested for anti-tetrabenazine activity in mice. Most of the target compounds were prepared by reaction of 2-bromopropio-phenone ( 22 ) with the appropriate amino alcohol to form 2-phenylmorpholinols. Reduction of the 2-phenyl-morpholinols with sodium borohydride gave amino diols, which were cyclized to morpholines with acid. Alternatively, oxazines 17 and 18 were synthesized by alkylation of phenyl-(2-pyrrolo)carbinol (32a) and phenyl-(2-piperidyl)carbinol (32b) with 2-bromoethanol, followed by cyclization of the resulting amino diols with acid. Only the spirocyclic compounds 8 and 9 had i.p. anti-tetrabenazine activity comparable to the non-cyclic compounds 2a-3b , but 8 and 9 were less active by the oral route of administration.     

Aromaticity of organic heterocyclothiazenes and analogues

Members of a series of carbon-poor sulfur-nitrogen heterocycles and polycycles are shown by direct ab initio ipsocentric calculation to support diatropic ring currents and hence to be aromatic on the basis of magnetic criteria. They include 7-cycles S(3)N(2)(CH)(2), S(3)N(3)(CH), and S(3)N(4) and 8-cycles S(2)N(4)(CH)(2) and S(2)N(2)(CH)(4), all with 10 pi electrons. The unknown trithiatetrazepine S(3)N(4) is predicted to be at least as aromatic as its known diaza and triaza homologues. Angular-momentum arguments show that the pi-electron-rich nature of (4n + 2) SN heterocycles is the key to their diatropic current. The Woodward dithiatetrazocine parent framework S(2)N(4)(CH)(2) supports a diatropic ring current, as does its analogue in which N and CH groups are formally exchanged. Formal expansion of (4n + 2)-pi carbocyclic systems by insertion of NSN motifs in every CC bond is predicted to lead to structures that support diatropic ring currents: explicit ab initio calculation of magnetic response predicts the 24-center, 30-pi-electron heterocycle S(6)N(12)(CH)(6), formally derived from benzene, to be aromatic on the basis of this criterion.     

Synthesis of granulatimide positional analogues

The Stille coupling reaction of the stannylindole 13 with the 5-iodoimidazole derivative 14 (or 27) in the presence of PdCl(2)(PPh(3))(2) gave the corresponding indole-imidazole coupling product 15 (or 28), thereby affording a synthetic approach to 10-methylgranulatimide (7), 15-methylgranulatimide (11), and 10, 15-dimethylgranulatimide (12), as well as 10-methylisogranulatimide B (5).     

Photochemical ring-opening and intramolecular hydrogen shift reactions in sulfur analogues of alpha-pyrone

A combined matrix isolation FTIR and theoretical DFT(B3LYP)/6-311++G(d,p) study of the photochemistry of sulfur analogues of alpha-pyrone [2H-thiopyran-2-one (TP) and 2H-pyran-2-thione (PT)] was carried out. The vibrational spectra of monomers of the compounds isolated in low-temperature argon matrixes were studied experimentally and assigned completely on the basis of theoretical calculations. UV irradiation (lambda > 337 nm) of the studied compounds isolated in low-temperature matrixes results mainly in the ring-opening reaction by means of the cleavage of the alpha-bond. Other photoprocesses, not involving the alpha-bond-cleavage step (such as generation of Dewar valence isomer), correspond to the minor reaction channels in both studied compounds. The ring-opening photoreaction in PT represents the first reported case of an alpha-bond cleavage in a compound with a C=S group attached to a six-membered ring, in which the internal strain practically does not exist, whereas the corresponding reaction in TP (a cleavage of a C-S bond in the alpha position with respect to a carbonyl group) is now reported for the first time. Following the ring-opening reactions, isomerization processes and intramolecular hydrogen shift reactions were observed, enabling production of TP from PT and vice versa. A detailed study of such processes was undertaken, and kinetical and mechanistical data are presented and discussed.     

Solid-phase synthesis of chlorofusin analogues

We report an efficient and versatile solid-phase synthesis through which two series of chlorofusin analogues, one bearing varying chromophores and the other with various amino acid substitutions in the cyclic peptide, were synthesized. These peptides were prepared using a strategy involving side-chain immobilization, on-resin cyclization, and postcyclization modification. The success of these syntheses demonstrates the broad utility of the method. Both series of analogues were evaluated for their inhibitory activity against the p53/MDM2 interaction but were shown to be inactive in the concentration range tested. This suggests that the full chromophore structure may be required for activity.     

Synthesis of bridged aza-rebeccamycin analogues

The syntheses of rebeccamycin analogues possessing a 7-azaindole moiety instead of an indole unit, and with both indole and azaindole moieties linked to the carbohydrate are described. In these bridged aza compounds, the oxygen of the pyranose heterocycle is oriented towards either the indole, or the azaindole unit. In these series, compounds bearing a free imide nitrogen were synthesized by coupling the corresponding aglycones with a sugar pre-tosylated in 2-position via a Mitsunobu reaction. To obtain a precursor for bridged aza-rebeccamycin analogues substituted in 6-position on the sugar moiety, a 2,6-ditosylated sugar was used.     

Synthetic anisomycin analogues activating the JNK/SAPK1 and p38/SAPK2 pathways

The synthesis of C(4)H and C(4)Me analogues of the JNK/p38 pathway activator anisomycin, based upon an aldol or Claisen construction of the C(3)-C(4) bond, has been demonstrated. The relative activation of the JNK/SAPK1 and p38/SAPK2 pathways in RAW macrophages by these analogues, and their synthetic precursors, has been assessed using immunoblot assays against phosphorylated c-Jun and MAPKAP-K2. These studies demonstrate that some of the synthetic C(4) analogues are also potent activators of these stress kinase pathways.     

Synthesis of cyclobutane serine analogues

In this paper, we describe a thermal [2 + 2] cycloaddition involving 2-acylaminoacrylates as electron-poor acceptor alkenes, a reaction that involves a Michael-Dieckmann-type process. The reaction gives rise to a new substituted cyclobutane skeleton that can be transformed into amino acid derivatives. For example, a number of transformations were carried out to give the two pairs of stereoisomers of the 2-hydroxycyclobutane-alpha-amino acid serine analogue (c(4)Ser); compounds 22 and 23. This synthesis covers a gap in knowledge in the broad field of restricted amino acids.     

Synthesis of dihydrolysergol analogues

As a part of a search for novel biological active ergoline derivatives, the indole ring present in the ergoline skeleton (indole[4,3‐f,g]quinoline) was converted into different heterocyclic ring systems such as quinazoline 2 , benzofurane 3 and benzoxazole 4 . Due to the paramount importance of chirality to attain biological activity, natural dihydrolysergic acid 1 was chosen as starting material and a synthetic pathway conservative in term of chirality was followed.     

Conformational analysis of chlorocholine analogues

The high-resolution proton magnetic resonance spectra of the methylene groups of 2-chloroethyl trimethyl ammonium chloride (I) and 2-chloroethyl dimethyl ammonium chloride (II) were studied by iterative computer calculation. From the values of the spectral parameter L it is concluded that in the case of compound (I) the enthalpy difference between the antiperiplanar and the synclinal conformers is very low, probably, emphasis lies on the antiperiplanar conformation. Compound (II) exists in a dominant synclinal conformation. PCILO calculations of 2-chloroethyl trimethyl ammonium yield the antiperiplanar conformation as the most stable one in agreement with experiment. The energy difference between the antiperiplanar and the syn/anticlinal conformation is 0.7 kcal mole^?1. 2-Chloroethyl dimethyl ammonium, 2-chloroethyl methyl ammonium and 2-chloroethyl ammonium in our PCILO calculations exist in a predominant synclinal conformation. The calculated charge distributions demonstrate that the quaternary nitrogen atom is approximately neutral, the “positive” charge is distributed among the methyl groups and hydrogen atoms attached to the nitrogen atom.     

Consistent aromaticity evaluations of methylenecyclopropene analogues

Quantitative evaluations of the aromaticity (antiaromaticity) of neutral exocyclic substituted cyclopropenes (HC)(2)C=X (X = BH to InH (group 13), CH(2) to SnH(2) (group 14), NH to SbH (group 15), O to Te (group 16)) by their computed extra cyclic resonance energies (ECRE, via the block-localized wave function method) and by their aromatic stabilization energies (ASEs, via energy decomposition analyses) correlate satisfactorily (R(2) = 0.974). Electronegative X-based substituents increase the aromaticity of the cyclopropene rings, whereas electropositive substituents have the opposite effect. For example, (HC)(2)C=O is the most aromatic (ECRE = 10.3 kcal/mol), and (HC)(2)C=InH is the most antiaromatic (ECRE = -15.0 kcal/mol). The most refined dissected nucleus-independent chemical shift magnetic aromaticity index, NICS(0)(πzz), also agrees with both energetic indexes (R(2) = 0.968, for ECRE; R(2) = 0.974, for ASE), as do anisotropy of the induced current density plots.     

Synthesis of dibenzo[def,p]chrysene, its active metabolites, and their 13C-labeled analogues

Dibenzo[def,p]chrysene (DBC) is a highly carcinogenic polycyclic aromatic hydrocarbon suspected to be involved in initiation of lung cancer in smokers. Efficient new syntheses of DBC, its active metabolites [DBC diol (1), DBC dione (2), DBC diol epoxide (3)], and their previously unknown 13C2-labeled analogues are reported. The 13C2-labeled analogues are required as standards for sensitive methods of analysis of their DNA adducts in human cells using stable isotope dilution liquid chromatography/tandem mass spectrometry.     

Graphene analogues of layered metal selenides

Graphene analogues of MoSe(2) and WSe(2) have been prepared by three different chemical methods and characterized by electron microscopy and other methods. Graphene analogues of these diselenides as well as of GaSe have also been obtained by liquid-phase exfoliation. Raman spectra of the graphene analogues show significant changes relative to those of the bulk samples.     

Shortcut to mycothiol analogues

[structure: see text] The synthesis of a simplified thioglycosidic analogue (2) of mycothiol (1) is described. Evaluation of 2 against mycothiol S-conjugate amidase from Mycobacterium tuberculosis reveals good specific activity (7500 nmol min(-)(1) mg-protein(-)(1), vs 14 200 for 1), indicating that 2 can serve as a starting point for antitubercular drug design.     

Tetracyanoethylene substituted triphenylamine analogues

A set of tetracyanoethylene (TCNE) substituted triphenylamine analogues (4–6) exhibiting strong intramolecular charge transfer (ICT) were designed and synthesized by the [2+2] cycloaddition–retroelectrocyclization reaction of 3 (tris-(4-phenylethynyl-phenyl)-amine) with TCNE. The reaction was found to be temperature dependent. The blue shift in the π → π¹ transition and intramolecular charge transfer (ICT) in amines 4–6 were found to be directly proportional to the number of TCNE units. The computational study shows good agreement with the experimental results and reveals that as the number of TCNE units in amine increases, HOMO–LUMO gap increases.     

Studies on pyrylretinal analogues of bacteriorhodopsin

The retinal analogues 3-methyl-5-(1-pyryl)-2E,4E-pentadienal (1) and 3,7-dimethyl-9-(1-pyryl)-2E,4E,6E,8E-nonatetr aenal (2), which contain the tetra aromatic pyryl system, have been synthesized and characterized in order to examine the effect of the extended ring system on the binding capabilities and the function of bacteriorhodopsin (bR). The two bR mutants, E194Q and E204Q, known to have distinct proton-pumping patterns, were also examined so that the effect of the bulky ring system on the proton-pumping mechanism could be studied. Both retinals formed pigments with all three bacterioopsins, and these pigments were found to have absorption maxima in the range 498-516 nm. All the analogue pigments showed activity as proton pumps. The pigment formed from wild-type apoprotein bR with 1 (with the shortened polyene side chain) showed an M intermediate at 400 nm and exhibited fast proton release followed by proton uptake. Extending the polyene side chain to the length identical with retinal, analogue 2 with wild-type apoprotein gave a pigment that shows M and O intermediates at 435 nm and 650 nm, respectively. This pigment shows both fast and slow proton release at pH 7, suggesting that the pKa of the proton release group (in the M-state) is higher in this pigment compared to native bR. Hydrogen azide ions were found to accelerate the rise and decay of the O intermediate at neutral pH in pyryl 2 pigment. The pigments formed between 2 and E194Q and E204Q showed proton-pumping behavior similar to pigments formed with the native retinal, suggesting that the size of the chromophore ring does not alter the protein conformation at these sites.     

Synthetic analogues of the active site of the A-cluster of acetyl coenzyme A synthase/CO dehydrogenase: syntheses, structures, and reactions with CO

Two metallosynthons, namely (Et4N)2[Ni(NpPepS)] (1) and (Et4N)2[Ni(PhPepS)] (2) containing carboxamido-N and thiolato-S as donors have been used to model the bimetallic M(p)-Ni(d) subsite of the A-cluster of the enzyme acetyl coenzyme A synthase/CO dehydrogenase. A series of sulfur-bridged Ni/Cu dinuclear and trinuclear complexes (3-10) have been synthesized to explore their redox properties and affinity of the metal centers toward CO. The structures of (Et4N)2[Ni(PhPepS)] (2), (Et4N)[Cu(neo)Ni(NpPepS)] x 0.5 Et2O x 0.5 H2O (3 x 0.5 Et2O x 0.5 H2O), (Et4N)[Cu(neo)Ni(PhPepS)] x H2O (4 x H2O), (Et4N)2[Ni{Ni(NpPepS)}2] x DMF (5 x DMF), (Et4N)2[Ni(DMF)2{Ni(NpPepS)}2] x 3 DMF (6 x 3 DMF), (Et4N)2[Ni(DMF)2{Ni(PhPepS)}2] (8), and [Ni(dppe)Ni(PhPepS)] x CH2Cl2 (10 x CH2Cl2) have been determined by crystallography. The Ni(d) mimics 1 and 2 resist reduction and exhibit no affinity toward CO. In contrast, the sulfur-bridged Ni center (designated Ni(C)) in the trinuclear models 5-8 are amenable to reduction and binds CO in the Ni(I) state. Also, the sulfur-bridged Ni(C) center can be removed from the trimers (5-8) by treatment with 1,10-phenanthroline much like the "labile Ni" from the enzyme. The dinuclear Ni-Ni models 9 and 10 resemble the Ni(p)-Ni(d) subsite of the A-cluster more closely, and only the modeled Ni(p) site of the dimers can be reduced. The Ni(I)-Ni(II) species display EPR spectra typical of a Ni(I) center in distorted trigonal bipyramidal and distorted tetrahedral geometries for 9(red) and 10(red), respectively. Both species bind CO, and the CO-adducts 9(red)-CO and 10(red)-CO display strong nu(co) at 2044 and 1997 cm(-1), respectively. The reduction of 10 is reversible. The CO-affinity of 10 in the reduced state and the nu(co) value of 10(red)-CO closely resemble the CO-bound reduced A-cluster (nu(co) = 1996 cm(-1)).