Infrared and Raman spectra, conformational stability, ab initio calculations of structure, and vibrational assignment of 2-hexyne

The infrared spectra (3500–50 cm⁻¹) of the gas and solid and the Raman spectra (3500–50 cm⁻¹) of the liquid and solid have been recorded for 2-hexyne, CH₃–CC–CH₂CH₂CH₃. Variable temperature studies of the infrared spectrum (3500–400 cm⁻¹) of 2-hexyne dissolved in liquid krypton have also been recorded. Utilizing four anti/gauche conformer pairs, the anti(trans) conformer is found to be the lower energy form with an enthalpy difference of 74±8 cm⁻¹ (0.88±0.10 kJ/mol) determined from krypton solutions over the temperature range −105 to −150 °C. At room temperature it is estimated that there is 42% of the anti conformer present. Equilibrium geometries and energies of the two conformers have been determined by ab initio (HF and MP2) and hybrid DFT (B3LYP) methods using a number of basis sets. Only the HF and DFT methods predict the anti conformer as the more stable form as found experimentally. A vibrational assignment is proposed based on the force constants, relative intensities, depolarization ratios from the ab initio and DFT calculations and on rotational band contours obtained using the calculated equilibrium geometries. From calculated energies it is shown that the CH₃ group exhibits almost completely free rotation which is in agreement with the observation of sub-band structure for the degenerate methyl vibrations from which values of the Coriolis coupling constants, ζ, have been determined. The results are compared to similar properties of some corresponding molecules.     

FT-IR, FT-Raman spectra, density functional computations of the vibrational spectra and molecular geometry of biomolecule 5-aminouracil

FT-IR and FT-Raman spectra of the biomolecule 5-aminouracil were recorded in the regions 400–4000 cm⁻¹ and 10–3500 cm⁻¹, respectively. The observed vibrational wavenumbers were analyzed and assigned to different normal modes of vibration of the molecule. Density functional calculations were performed to support wavenumber assignments of the observed bands. A comparison with the molecule of uracil was made, and specific scale factors were employed in the predicted wavenumbers of 5-aminouracil. With the purpose of study the important molecule 5-aminouracil, its equilibrium geometry and harmonic wavenumbers were calculated for the first time by the B3LYP DFT method. The vibrational wavenumbers were compared with IR and Raman experimental data. Also good reproduction of the experimental wavenumbers is obtained and the % error is very small. All the tautomeric forms of 5-aminouracil were determined and optimized. The dimer forms were also simulated. The energy, atomic charges and dipole moments were discussed and several general conclusions were underlined.     

Raman and infrared spectra, conformational stability, ab initio calculations and vibrational assignments for 2-chloroethyl silane

The infrared (3500–30 cm⁻¹) spectra of gaseous and solid and the Raman (3500–10 cm⁻¹) spectra of liquid with quantitative depolarization ratios and solid 2-chloroethyl silane, ClCH₂CH₂SiH₃, have been recorded. Similar data have been recorded for the Si–d₃ isotopomer. These data indicate that two conformers, trans and gauche, are present in the fluid states but only one conformer, trans, is present in the solid. The mid-infrared spectra of the sample dissolved in liquified xenon as a function of temperature (−55 to −100°C) has been recorded. The enthalpy difference between the conformers has been determined to be 181±12 cm⁻¹ (2.17±0.14 kJ/mol) with the trans rotamer the more stable form. From the isolated Si–H frequencies from the Si–d₂ isotopomer the r_o Si–H distances of 1.484 and 1.483 Å for the trans and 1.481 for the gauche conformers have been obtained. Ab initio calculations have been carried out with several different basis sets up to MP2/6-311+G** from which structural parameters and conformational stabilities have been determined. With all the basis sets the trans form is predicted to be the more stable conformer which is consistent with the experimental results. These results are compared to the corresponding quantities for the carbon analogue.     

Infrared and Raman spectra, conformational stability, ab initio calculations, and vibrational assignments for methylaminothiophosphoryl difluoride

Infrared spectra (4000–50 cm⁻¹) of the vapor, amorphous and crystalline solids and Raman spectra (3600–10 cm⁻¹) of the liquid with qualitative depolarization data as well as the amorphous and crystalline solids of methylaminothiophosphoryl difluoride, CH₃N(H)P(=S)F₂, and three deuterated species, CD₃N(H)P(=S)F₂, CH₃N(D)P(=S)F₂, and CD₃N(D)P(=S)F₂, have been recorded. The spectra indicate that in the vapor, liquid and amorphous solid a small amount of a second conformer is present, whereas only one conformer remains in the low temperature crystalline phase. The near-infrared spectra of the vapor confirms the existence of two conformers in the gas phase. Asymmetric top contour simulation of the vapor shows that the trans conformer is the predominant vapor phase conformer. From a temperature study of the Raman spectrum of the liquid the enthalpy difference between the trans and near-cis conformers was determined to be 368±15 cm⁻¹ (4.41±0.2 kJ/mol), with the trans conformer being thermodynamically preferred. Ab Initio calculations with structure optimization using the 6-31G(d) and 6-311+G(d,p) basis sets at the restricted Hartree–Fock (RHF) and/or with full electron correlation by the perturbation method to second order (MP2) support the occurrence of near-trans (5° from trans) and near-cis (20° from cis) conformers. From the RHF/6-31G(d) calculation the near-trans conformer is predicted to be the more stable form by 451 cm⁻¹ (5.35 kJ/mol) and from the MP2/6-311+G(d,p) calculation by 387 cm⁻¹ (4.63 kJ/mol). All of the normal modes of the near-trans rotamer have been assigned based on infrared band contours, depolarization values and group frequencies and the assignment is supported by the normal coordinate calculation utilizing harmonic force constants from the MP2/6-31G(d) ab initio calculations.     

Vibrational (FT-IR and FT-Raman) and NMR studies on selected metal (Ca, Mn, Zn) complexes with ortho-, meta-, and para-iodobenzoic acids

The vibrational (FT-IR and FT-Raman) and NMR (¹H and ¹³C) spectra of Ca, Mn, and Zn complexes with ortho-, meta-, and para-iodobenzoic acids have been studied. The solid state samples of all complexes have been measured within the range 4000–400 cm⁻¹, while water solutions of ortho-iodobenzoates within the range 4000–800 cm⁻¹. Based on previous experimental data and normal mode calculations for simpler complexes the assignment of bands observed in vibrational spectra of studied compounds has been done. Some significant differences in vibrational structure (frequency and intensity of selected bands) have been observed and discussed. The effect of metal on ring vibrations and carboxylic anion stretching and deformation has been investigated. Also, influence of iodine substitution on the aromatic ring and carboxylic anion, depending on iodine ring position, has been discussed. In case of soluble compounds, wavenumbers of characteristic bands of water solution samples have been compared with wavenumbers of corresponding bands of solid state samples.     

Far infrared spectra, conformational equilibria, vibrational assignments, ab initio calculations and structural parameters for 2-bromoethanol

The far infrared spectrum from 370 to 50 cm⁻¹ of gaseous 2-bromoethanol, BrCH₂CH₂OH, was recorded at a resolution of 0.10 cm⁻¹. The fundamental O–H torsion of the more stable gauche (Gg′) conformer, where the capital G refers to internal rotation around the C–C bond and the lower case g to the internal rotation around the C–O bond, was observed as a series of Q-branch transitions beginning at 340 cm⁻¹. The corresponding O–H torsional modes were observed for two of the other high energy conformers, Tg (285 cm⁻¹) and Tt (234 cm⁻¹). The heavy atom asymmetric torsion (rotation around C–C bond) for the Gg′ conformer has been observed at 140 cm⁻¹. Variable temperature (−63 to −100°C) studies of the infrared spectra (4000–400 cm⁻¹) of the sample dissolved in liquid xenon have been recorded. From these data the enthalpy differences have been determined to be 411±40 cm⁻¹ (4.92±0.48 kJ/mol) for the Gg′/Tt and 315±40 cm⁻¹ (3.76±0.48 kJ/mol) for the Gg′/Tg, with the Gg′ conformer the most stable form. Additionally, the infrared spectrum of the gas, and Raman spectrum of the liquid phase are reported. The structural parameters, conformational stabilities, barriers to internal rotation and fundamental frequencies have been obtained from ab initio calculations utilizing different basis sets at the restricted Hartree–Fock or with full electron correlation by the perturbation method to second order. The theoretical results are compared to the experimental results when appropriate. Combining the ab initio calculations with the microwave rotational constants, r₀ adjusted parameters have been obtained for the three 2-haloethanols (F, Cl and Br) for the Gg′ conformers.     

Infrared and Raman spectra of 5-amino-1,3,4-thiadiazole-2-sulfonamide (Hats). Experimental data and quantum chemistry calculations

The infrared and Raman spectra in the range 4000–50 cm⁻¹ were obtained for 5-amino-1,3,4-thiadiazole-2-sulfonamide. The molecular geometry was optimized by means of the DFT methods of quantum chemistry (B3LYP/6-31G^**), resulting in a structure which agrees quite well with that obtained by X-ray diffraction. The wavenumbers corresponding to the normal modes of vibration were calculated using the same approximation and the associated force field converted to a set of local symmetry coordinates, with subsequent calculation of the potential energy distribution. An assignment of the observed bands is proposed on the basis of such calculations and the comparison with related molecules.     

Conformational stability of 1-bromo-2-fluoroethane from temperature dependent FT-IR spectra of rare gas solutions

Variable temperature (−55 to −135°C) studies of the infrared spectra (3500–400 cm⁻¹) of 1-bromo-2-fluoroethane, BrCH₂CH₂F, dissolved in liquid krypton and xenon have been recorded. From these data, the enthalpy difference has been determined to be 108±9 cm⁻¹ (1.296±0.113 kJ/mol) and 112±8 cm⁻¹ (1.346±0.098 kJ/mol) from the krypton and xenon solutions, respectively, with the trans conformer the more stable rotamer. Complete vibrational assignments are presented for both conformers which are consistent with the predicted frequencies obtained from the ab initio MP2/6-31G^* calculations. The optimized geometries, conformational stabilities, harmonic force fields, infrared intensities, Raman activities, and depolarization ratios have been obtained from RHF/6-31G^* and/or MP2/6-31G^* ab initio calculations. These quantities are compared to the corresponding experimental quantities when appropriate. Structural parameters and conformational stability have also been obtained from MP2/6-311+G^** calculations. Combining the ab initio predicted structural parameters with the microwave rotational constants, r_o parameters have been obtained for the gauche conformer.     

Conformational and structural studies of ethyl fluorosilane from temperature dependent FT-IR spectra of krypton solutions and ab initio calculations

The infrared spectra (3200–30 cm⁻¹) of gaseous and solid ethyl fluorosilane, CH₃CH₂SiH₂F, have been recorded. Additionally, the Raman spectra (3200–30 cm⁻¹) of the liquid and solid have been recorded and quantitative depolarization values obtained. Both the gauche and trans conformers have been identified in the fluid phases but only the gauche conformer remains in the solid. Variable temperature (−105 to −150°C) studies of the infrared spectra of the sample dissolved in liquid krypton have been carried out. From these data, the enthalpy difference has been determined to be 54±16 cm⁻¹ (646±191 J/mol) with the gauche conformer the more stable form. This is consistent with the predictions from ab initio, MP2/6-311+G(2d,2p), calculation as well as those with smaller basis sets with full electron correlations. A complete vibrational assignment is proposed for both the trans and gauche conformers based on infrared band contours, relative intensities, depolarization values, and group frequencies, which are supported by normal-coordinate calculations utilizing the force constants from MP2/6-31G(d) ab initio calculations. Complete equilibrium geometries have been determined for both rotamers by ab initio calculations employing a variety of basis sets up to 6-311+G(2d,2p) at levels of restricted Hartree–Fock (RHF) and/or Moller Plesset to the second order (MP2) with full electron correlation. The adjusted r₀ parameters have been obtained for both conformers from a combination of the previously reported rotational constants with ab initio predicted values. All results are compared to similar quantities of some corresponding molecules.     

Infrared, and Raman spectra, conformational stability, normal coordinate analysis, ab initio calculations, and vibrational assignment of 1-chlorosilacyclobutane

The infrared spectra (3500–40 cm⁻¹) of gaseous and solid and the Raman spectra (3500–30 cm⁻¹) of liquid and solid 1-chlorosilacyclobutane, c-C₃H₆SiClH, have been obtained. Both the axial and equatorial conformers with respect to the chlorine atom have been identified in the fluid phases. Variable temperature (−105 to −150°C) studies of the infrared spectra of the sample dissolved in liquid krypton have been carried out. From these data, the enthalpy difference has been determined to be 211±17 cm⁻¹ (2.53±0.21 kJ/mol), with the equatorial conformer being the more stable form and the only conformer remaining in the annealed solid. At ambient temperatures, approximately 26% of the axial conformers are present in the vapor phase. A complete vibrational assignment is proposed for the equatorial conformer, and many of the fundamentals of the axial conformers have also been identified. The vibrational assignments are supported by normal coordinate calculations utilizing ab initio force constants. Complete equilibrium geometries, conformational stabilities, harmonic force fields, infrared intensities, Raman activities, and depolarization ratios have been determined for both rotamers by ab initio calculations employing the 6-31G(d) basis set at the levels of restricted Hartree–Fock (RHF) and/or Moller–Plesset (MP) to second order. Structural parameters have also been obtained using MP2/6-311+G(d,p) ab initio calculations. The r₀ parameters for both conformers are obtained from a combination of the ab initio predicted values and the twelve previously reported microwave rotational constants. The results are discussed and compared to those obtained for some similar molecules.     

Experimental and quantum chemical studies of structure and vibrational spectra of platinum(II) and palladium(II) thiourea chlorides

Equilibrium geometries of platinum(II) and palladium(II) tetrathiourea dichlorides have been determined by the X-Ray diffraction studies as well as calculated by the Density Functional Theory using the MPW1PW/LanL2DZ functional/basis set. Infrared spectra of the species have also been studied in the 4000–400 cm⁻¹ frequency range both experimentally and theoretically. The experimental and theoretical data remain in satisfactory agreement.     

Conformational studies of cyclopropylmethyl isocyanate from temperature dependent FT-IR spectra of xenon solutions and ab initio calculations

Variable temperature (−55 to −100 °C) studies of the infrared spectra (3200 to 100 cm⁻¹) of cyclopropylmethyl isocyanate, c-C₃H₅CH₂NCO, dissolved in liquefied xenon, have been carried out. The infrared spectra (gas and solid) as well as the Raman spectrum of the liquid have been recorded from 3200 to 100 cm⁻¹. By analyzing six conformer pairs in xenon solutions, an enthalpy difference of 193 ± 19 cm⁻¹ (2.31 ± 0.23 kJ/mol) was obtained with the gauche–cis rotamer (the first designation indicates the orientation of the CNCO group with respect to the three-membered ring, the second designation indicates the relative orientation of the NCO group with respect to the bridging CC bond) the more stable form and the only form present in polycrystalline solid. The abundance of the cis–trans conformer present at ambient temperature is 16 ± 1%. The potential function governing the conformational interchange has been obtained from B3LYP/6-31G(d) calculations and the two-dimensional potential has been obtained. From MP2 ab initio calculations utilizing various basis sets with diffuse functions, the gauche–cis conformer is predicted to be more stable by 223 to 269 cm⁻¹, which is consistent with the experimental results. However, without diffuse functions the predicted conformational energy differences are much smaller (77–166 cm⁻¹). Similar diffuse function dependency affects density functional theory calculations by the B3LYP method to a lesser extent. A complete vibrational assignment for the gauche–cis conformer is proposed and several fundamentals for the cis–trans conformer have been identified. The structural parameters, dipole moments, conformational stability, vibrational frequencies, infrared intensities and Raman activities have been predicted from ab initio calculations and r₀ structural parameters are estimated. These experimental and theoretical results are compared to the corresponding quantities of some similar molecules.     

Raman scattering study of highly fluorinated graphite

Raman spectra of highly fluorinated C_xF samples (1<x<2) prepared at room temperature and 515°C were measured. C_xF samples prepared at room temperature exhibited two Raman bands at 1593–1583 and 1555–1542 cm⁻¹. Graphite samples fluorinated at 515°C for 1 and 2 min also gave similar bands at 1581–1580 and 1550–1538 cm⁻¹. However, graphite samples fluorinated from 15 min to 10 h at 515°C no longer showed such spectra. The Raman peaks shifted to lower frequencies with increasing fluorine concentration in C_xF. This trend is due to the weakening of the C---C bonds of the graphene layers. Observation of both kinds of Raman bands suggests the coexistence of two highly fluorinated phases, C₂F and C₁F, in the samples. The process of formation of graphite fluoride is discussed on the basis of the Raman spectra of C_xF samples obtained at 515°C.     

Quantum chemical determination of molecular geometries and interpretation of FTIR and Raman spectra for 2,4,5- and 3,4,5-tri-fluoro-benzonitriles

Raman and FTIR spectra of 2,4,5- and 3,4,5-tri-fluoro-benzonitriles have been recorded in the regions 50-4000 cm(-1) and 400-4000 cm(-1), respectively. Measurement of depolarization ratios for the Raman lines has also been made. Optimized geometrical parameters, charge distributions and vibrational wavenumbers were calculated using ab initio quantum chemical Gaussian 03, Revision C.02 software. Each vibration has been assigned using observed wavenumbers in the IR and Raman spectra and their relative intensities which measured by normalizing the highest intensity, depolarization ratios of the Raman lines, the calculated frequencies and vector displacements with the help of GaussView software.     

FT-Raman and FTIR spectra, normal coordinate analysis and ab initio computations of (2-methylphenoxy)acetic acid dimer

The Fourier Transform Raman and infrared spectra of the crystallized herbicide (2-methylphenoxy)acetic acid (MPA) have been recorded in the region 4000–400 cm⁻¹. The geometry, intermolecular hydrogen bond, and harmonic vibrational frequencies of MPA have been investigated with the help of B3LYP density functional theory (DFT) methods. The calculated molecular geometry has been compared with the experimental data obtained from XRD data. The assignments of the vibrational spectra have been carried out with the aid of normal coordinate analysis (NCA) following the scaled quantum mechanical force field methodology (SQMFF). The strong doubly hydrogen bonded interface of the dimerized system is well demonstrated by the red shift in OH stretching frequency concomitant with the elongation of bond length. The most stable structure of the dimer possesses center of symmetry and interaction energy of −83.642 kJ mol⁻¹ after the basis set superposition error (BSSE) correction by the counterpoise (CP) method. The natural bond orbital analysis (NBO) ascertains that the delocalization of unpaired electron of oxygen atom onto the CO bond causes double bond character.     

Conformational stabilities of dimethylmethoxyphosphine and dimethyl(methylthio)phosphine from temperature dependent infrared spectra of rare gas solutions

Variable temperature (−55 to −150°C) studies of the infrared spectra (3500 to 400 cm⁻¹) of dimethylmethoxyphosphine, (CH₃)₂POCH₃ and dimethyl(methylthio)phosphine, (CH₃)₂PSCH₃ dissolved in liquid krypton and/or xenon have been recorded. From these data, the enthalpy differences have been determined to be 393±50 cm⁻¹ (4.71±0.60 kJ/mol), for (CH₃)₂POCH₃ with the near-cis conformer the more stable rotamer and 80±10cm⁻¹ (0.96±0.12 kJ/mol) for (CH₃)₂PSCH₃ with the cis conformer the more stable form. Complete vibrational assignments are presented for both molecules, which are consistent with the predicted frequencies obtained from the ab initio MP2/6-31G(d) calculations. The optimized geometries, conformational stabilities, harmonic force fields, infrared intensities, Raman activities, and depolarization ratios have been obtained from RHF/6-31G(d) and/or MP2/6-31G(d) ab initio calculations. These quantities are compared to the corresponding experimental quantities when appropriate as well as with some corresponding results for some similar molecules.     

A study of the Raman spectra of alkanes in the Fermi-resonance region

The experimental and theoretically predicted Raman spectra for the first few alkanes in the homologous series: methane, ethane, propane and butane are presented for the region 2700–3100 cm⁻¹. The structure of the spectra is rather complex. Analysis of the results obtained shows that Fermi resonance occurs between the CH stretching vibrations in the 3000 cm⁻¹ region and the 2ν overtones of deformation vibrations in the low frequency (1450–1500 cm⁻¹) region.     

Vibrational intensities of liquid N-methylpiperidine

Thin film transmission spectra of liquid N-methylpiperidine were measured in the 4000–500 cm⁻¹ region, using cells of thicknesses ranging from 1 to 8.2 μm. The spectra of both components of the complex refractive index were determined from these data in the mid-IR. Vibrational intensities and other spectral data were calculated from the k(ν) spectrum. In this region 41 bands were detected and quantitatively described. The assignment of numerous bands was carried out. The results were compared with available literature data.     

On the vibrational spectra and conformational stability of 1,1-dimethylhydrazine from temperature dependent FT-IR spectra of krypton solutions and ab initio calculations

Variable temperature (−105 to −150 °C) studies of the infrared spectra (3500–400 cm⁻¹) of 1,1-dimethylhydrazine, (CH₃)₂NNH₂, in liquid krypton have been carried out. No convincing spectral evidence could be found for the trans conformer which is expected to be at least 600 cm⁻¹ less stable than the gauche form. The structural parameters, dipole moments, conformational stability, vibrational frequencies, and infrared and Raman intensities have been predicted from MP2/6-31G(d) ab initio calculations. The predicted infrared and Raman spectra are compared to the experimental ones. The adjusted r₀ parameters from MP2/6-311+G(d,p) calculations are compared to those reported from an electron diffraction study. The energy differences between the gauche and trans conformers have been obtained from MP2 ab initio calculations as well as from density functional theory by the B3LYP method calculations from a variety of basis sets. All of these calculations indicate an energy difference of 650–900 cm⁻¹ with the B3LYP calculations predicted the larger values. The potential function governing the conformational interchange has been predicting from both types of calculations and comparisons have been made. The barrier to internal rotation by the independent rotor model of the inner methyl group is predicted to have a value of 1812 cm⁻¹ and that of the outer one of 1662 cm⁻¹ from ab initio MP2/6-31G(d) calculations. These values agree well with the experimentally determined values of 1852±16 and 1558±12 cm⁻¹, respectively, from a fit of the torsional transitions with the coupled rotor model. For the coupled rotor model the predicted V′₃₃ (sin 3τ₀ sin 3τ₁ term) value which ranged from 190 to 232 cm⁻¹ is in reasonable agreement with the experimental value of 268±3 cm⁻¹ but the predicted V₃₃ (cos 3τ₀ cos 3τ₁ term) value of −73 to −139 cm⁻¹ is 25% smaller and of the opposite sign of the experimental value of 333±22 cm⁻¹. These theoretical and spectroscopy results are compared to similar quantities of some corresponding molecules.     

DFT study and vibrational spectra of the phoshorus-containing G0 generation dendrimer

The Raman (10–3500 cm⁻¹) and infrared (150–3500 cm⁻¹) spectra have been recorded for tris(4-oxibenzaldehyde)thiophosphate. This compound includes structural parts of elementoorganic dendrimers: a core and terminal aldehyde groups. The structural optimization and normal mode analysis are performed for elementoorganic dendrimer on the basis of the ab initio density functional theory. It is found that the dendrimer exist in a single stable conformation with planar C₆H₄CHO fragments. Our calculations show that conformer with one trans and two gauche 4-oxibenzaldehyde groups is realized. All these observations suggest that steric congestion does not disturb the construction of dendrimers even for the highest generations, and that terminal groups are readily available for further reactions. Relying on DFT calculations a complete vibrational assignment is proposed for different parts of the studied dendrimers.