Chromatin and Nucleosome Organizations and DNA Replication of Nucleus Reassembled in vitro Using Purified Exogenous DNA and Xenopus Egg Extracts

It has been demonstrated in the last ten years that the nuclear reassembly may occur in the cell-free systems from frog egg extracts added with exogenous naked DNA. However, there remains an open question : is the cell-free reassembled nucleus structurally similar to the nucleus in the intact cell ? That is, does the cell-free reassembled nucleus contain nucleosomes and chromatin? For this issue, we have designed experiments for identifying the internal structures of the cell-free reassembled nucleus. These experiments show that the nucleus reassembled in vitro also contains chromatin which is composed of typical 10 nm nucleosome fibers of "beads-on-a-string", 30 nm filaments and the next higher-order structures. The digestion experiment with the enzyme micrococcal nuclease has demonstrated that the DNA in the nucleosome of the reconstituted chromatin is about 200 base pairs (bp) in length, of which 165 bp may be in the nucleosome particle, and 35 bp may be in the linker between two particles. Prolongin     

Structure of the right-handed helical crystal ribbon and multilevel fibrils in a tube fiber from a coir fiber

A coir fiber is composed of many tube fibers with large hollows that align in parallel. SEM observation has shown that the tube fiber existing in a coir fiber is packed by a right-handed helix crystal ribbon, and its length/diameter ratio is lower than that of the crystal ribbon by 1–2 orders of magnitude. Based on the results of TEM, the diameter of protofibrils extracted from coir fibers is 6–10 nm, while that of the microfibrils is 20–40 nm, and the length/diameter ratios of protofibrils and microfibrils are 50–250 and 25–150, respectively. According to these observed results, the packing models of the right-handed helix crystal ribbon and its multilevel fibrils have been derived and further verified through the calculation and comparison of both the crystallinity in volume and whisker sizes obtained by means of X-ray diffraction analysis.     

Characterization of New Natural Cellulosic Fiber from Acacia leucophloea Bark

There is a need to explore the possibility of natural fibers as a novel reinforcement to fabricate lightweight composite structures. This investigation was aimed at understanding the characteristics of fiber extracted from the bark of the Acacia leucophloea (AL) plant and its physico-chemical properties. Cellulose content (68.09 wt.%), density (1385 kg/m³), crystallinity index (51%), tensile strength (317–1608 MPa), and Young’s modulus (8.41 ? 69.61 GPa) properties were identified in the AL fibers, and thermal studies using TG and DTG analysis revealed that they degraded at a temperature of 220°C with kinetic activation energy of 73.1 kJ/mol.     

The influence of chemical treatment on the mechanical properties of windmill palm fiber

Bleached palm fiber without lignin, alkalized palm fiber without hemicelluloses and raw windmill palm fiber were prepared. Then, the chemical composition and the mechanical properties of the windmill palm fiber were investigated. Scanning electron microscopy, Fourier transform infrared spectroscopy and Raman microscopy were employed to characterize the structure and chemical composition. A universal material tester, nanoindentation and dynamic mechanical analysis were used to study the mechanical property of these samples. According to the results, bleach treatment removed most of the silica bodies as well as the lignin, smoothed the fiber surfaces and increased the hollowness to 50%. Alkali treatment removed most of the hemicelluloses, increased the surface roughness, and reduced the hollowness to 28%. Alkalized fibers have the highest tensile strength, elongation at break and elastic modulus, with values of 119.37 ± 27.21 MPa, 30.58 ± 5.87% and 10.75 ± 4.30 GPa, respectively. The raw material without treatment has the highest stiffness, while the alkalized samples are the most flexible fibers and sensitive to temperature.     

Covalent attachments of boron nitride nanotubes through a carboxylic linker: Density functional studies

Properties of attached boron nitride (BN) nanotubes based on linking two zigzag nanotubes through a carboxylic (–(CO)O–) linker were investigated by performing density functional theory (DFT) calculations. The linking boron and nitrogen atoms at the edges of two zigzag BN nanotubes were linked to the –(C]O)O– linker to make possible the attachments of two BN nanotubes together. Total energies, energy gaps, dipole moments, linking bond lengths and angles, and quadrupole coupling constants were obtained for the optimized structures to determine the properties of the attached BN nanotubes. The results indicated that different properties could be seen for the investigated models based on their linking status. For quadrupole coupling constants, the most significant changes of parameters were observed for the linking atoms among the investigated models of attached BN nanotubes.     

Formation of ZnO within flexible polymer fibers

In the process of fiber production from Zinc acetate and Polyvinylpyrrolidone using the electrospinning method, ZnO forms at temperature as low as 120 °C. The fibers were characterized using scanning electron microscopy, X-ray diffraction, Fourier transform infrared spectroscopy, and ultraviolet–visible (UV–Vis) spectroscopy. Upon heating at 120 °C for 12 h some fibers shrink in diameter down to about 100 nm while others remain in the 400–900 nm range. Within the hybrid fibers, ZnO crystallizes in the wurtzite structure with a bang gap of 3.3 eV. The hybrid fibers exhibit the flexibility of polymer component and optical properties of ZnO phase, and promise to be very useful in various applications.     

Fabrication and Characterization of Novel Salicylic Acid Sensors Using Different Reagents (Ferric and Copper)

Abstract

Fabrication of optical fiber salicylic acid (SA) sensors based on immobilization of ferric(III) nitrate and copper(II) acetate on Dowex‐50x8 is presented in this paper. The SA forms a stable purple complex with immobilized Fe³⁺ at pH 2.1 with a response time of 10 min while it forms a stable yellowish green complex with immobilized Cu²⁺ at pH 6.5 with a response time of 8 min. The reflectance spectra of the sensors were measured by using an optical fiber spectrophotometer. The results showed these SA sensors have maximum reflectance at 786 nm and 725 nm for SAFe complex and SACu complex, respectively. The useful dynamic response ranges are 0.02–0.50 g/L (SAFe) and 0.40–1.40 g/L (SACu). These complexes are stable for more than 24 hours. A good reproducibility (0.90%— SAFe; 0.86%— SACu) of measurement was obtained with these sensors.     

Expression of chirality in columnar hexagonal phases or DNA and nucleosomes

It is surprising to see how eukaryotic chromosomes or sperm nuclei are highly condensed chromatin materials and how they can sometimes present spectacular helical morphologies. We may suspect that these helical shapes originate from the chiral properties of DNA and other components of chromatin. Dense solutions of DNA and nucleosomes can be prepared in vitro to reproduce some of the characteristics of chromatin. They form multiple ordered phases, either mesophases or 3D crystals, that can be useful to analyze precisely how chiral structures can emerge, or not, from interactions between these constitutive elements. We address the question of the competition between twist and hexagonal packing in dense states of DNA, nucleosomes, chromatin and chromosomes. From the microscopic analysis of many examples, we show how the twist arising from the chirality of the objects can be diluted in the phase and/or expelled along twist walls. These walls are either parallel or normal to the direction of the columns. In the first case, we determine that the twist axis lies parallel to one θ₂ direction of the hexagonal network. Helical shapes of chromosomes and bundles of DNA and chromatin may also be consequences of this competition, as illustrated here.     

Application of Sol–Gel Based Poly(ethylene glycol)/Multiwalled Carbon Nanotubes Coated Fiber for SPME of Methyl tert-Butyl Ether in Environmental Water Samples

In this research, the sol–gel technology was applied for the preparation of solid-phase microextraction fibers for extracting of methyl tert-butyl ether (MTBE) from environmental water samples. For this purpose, two different polymers such as poly(ethylene glycol) (PEG) and combination of PEG and multiwall carbon nanotubes (MWCNTs) were prepared using sol–gel technology as coating procedure for the fibers. The pre-concentration process followed by GC–FID determination was used and the results evidenced that pre-concentration factor for PEG/CNTs fiber was approximately five times higher than PEG. Parameters affecting the extraction efficiency such as temperature, extraction time, stirring speed and salt effect for each fiber were investigated and optimized. On the optimal conditions, the linear range for MTBE with PEG and PEG/CNT fibers were 10–3,000 and 1–1,000 ng mL^?1 and the detection limits (S/N = 3) were 1.0 and 0.3 ng mL^?1, respectively. The sol–gel PEG/CNTs fiber has good performance and therefore relatively better figures of merit and experimental results such as thermal stability (up to 320 °C), average of life time (over 150 times) and repeatability (RSD < 4) in comparison to conventional PDMS/Carboxen fiber, which was already reported for determination of MTBE.     

Sieving study of chromatin and histone-DNA complex by porous hollow fiber membranes

Permeation of chromatin isolated from human HeLa S3 cells and histone-DNA complex through regenerated cellulose hollow fibers was investigated as a model study of DNA removal for drug manufacturing using membrane technology. It was found that the permeation of histone-DNA and chromatin through the membranes having a mean pore diameter of 15 nm was substantially lower than the permeation of free DNA which did not complex with proteins based on the concentration determination of the feed and permeate solutions using UV spectroscopy. Direct observation to determine the existence of chromatin and histone-DNA complex in the permeate solution was also performed using atomic force microscopic imaging. No chromatin and chromatin-like structures were found in the examination of 10 areas of 1.0×1.0 μm on the mica which had been adsorbed from the solution permeated through the membranes. Thus, the membranes having a mean pore diameter of 15 nm most likely reject the chromatin and histone-DNA complex that are observed to have an apparent width of 25–30 nm based on atomic force microscopic imaging.     

High resistance to thermal decomposition in brown cotton is linked to tannins and sodium content

Brown cotton fibers (SA-1 and MC-BL) studied were inferior to a white cotton fiber (Sure-Grow 747) in fiber quality, i.e., a shorter length, fewer twists, and lower crystallinity, but showed superior thermal resistance in thermogravimetric, differential thermogravimetric, and microscale combustion calorimetric (MCC) analyses. Brown cotton fibers yielded 11–23 % smaller total heat release and 20–40 % greater char. Washing fibers in water and a 1 % NaOH solution showed that rich natural inorganic components and the condensed tannins present in brown cotton are responsible for the unusual thermal property. The loss of inorganics from white cotton during a water wash increased the thermal decomposition temperature of cellulose, resulting in no char yield. However, the stronger binding of metal ions for brown cotton as well as its dominant adsorption of sodium ions after a 1 % NaOH wash facilitated the low-temperature thermal-reaction route; the sodium content showed a significant negative correlation with the heat release capacity of the fiber. Condensed tannins greatly enhanced the adsorption of sodium ions to the fiber and exhibited inherent thermal stability. The limiting oxygen indices (LOI) calculated from the MCC parameters indicated the slower burning characteristic of brown cotton, and its LOI was further increased upon adsorption of sodium ions.     

catena‐Poly[dibromozinc(II)‐μ‐ethyl­enediamine‐N:N′]: resolution of structural anomalies resulting from the interpretation of vibrational spectra

The title structure, [ZnBr₂(C₂H₈N₂)], is made up of infinite –ZnBr₂–(en)–ZnBr₂–(en)– zigzag chains. Each repeat unit contains a trans ethyl­enedi­amine ligand [N—C—C—N ?179 (1)°], which bridges two approximately tetrahedral but crystallographically distinct Zn atoms. One Zn atom is bisected by a crystallographic twofold axis, whereas the other has mirror symmetry. Even though the crystal packing does not allow significant interaction between Zn and N atoms on adjacent chains, it does facilitate extensive inter­molecular N—H?Br hydrogen bonding (N?H 2.69–2.96 Å).     

Experimental investigation on the mechanical properties of Cyperus pangorei fibers and jute fiber-based natural fiber composites

The present era uses natural fibers as a partial replacement for synthetic fibers, thereby utilizing eco-friendly materials in a number of automotive applications (namely, bumpers, wind shields, doors, ceilings, etc.). Although there are many research findings related to natural fiber composites, in this work, a new sandwich layer of Cyperus pangorei fibers and jute fiber epoxy hybrid composites is developed using the hand lay-up technique and compared with the pure Cyperus pangorei fiber and pure jute fiber epoxy composites. The mechanical properties like tensile, flexural, compressive, impact, and hardness are performed as per ASTM standards for the developed composites. The test results show that Cyperus pangorei hybrid composite 3 had a tensile strength of 50.2 MPa, flexural strength of 301.48 N mm^?2, ultimate compression load of 15.03 KN, impact energy of 6.34 J, and Shore D hardness of 82.7, which are superior by 1.1–1.5 times to all the other developed composites. The microstructural characterizations are performed using scanning electron microscope which played a vital role in analyzing the failure morphology of the composites.     

Synthesis and properties of thermoplastic polyimides with ether and ketone moieties

A series of polyimides containing ether and ketone moieties were synthesized from 1,3‐bis(4‐fluorobenzoyl) benzene and several commercially available dianhydrides via a conventional two‐step polymerization. The inherent viscosities of Polyamide acids ranged from 0.46 to 0.73 dL/g. Thermal properties, mechanical properties, and thermalplasticity of the obtained polimide films were investigated by focusing on the chemical structures of their repeat units. These films were amorphous, flexible, and transparent. All films displayed low T_gs (184–225 °C) but also excellent thermal stability, the 5% weight loss temperature was up to 542 °C under nitrogen. The films showed outstanding mechanical properties with the modulus up to 3.0 GPa and the elongation at break in the range of 8–160%. The uniaxial stretching of PI‐a at high temperature was studied owing to its excellent flexibility. The PI‐a had an elongation at break up to 1600% at 245 °C and the uniaxially stretched film exhibited a much higher modulus (3.9 GPa) and strength (240 MPa) than undrawn film. The results indicated that PI‐a can potentially be used to prepare materials such as fiber, ultra‐thin film or ultra‐high modulus film. All the obtained films also demonstrated excellent thermoplasticity (drop of E′ at T_g > 10³) which made the polyimides more suitable for melt processing. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 48: 2878–2884, 2010     

聚乙烯醇纤维轴向压缩变形结构研究

研究了具有不同分子链形态PVA纤维的轴向压缩变形结构 .结果表明 ,在具有带状结构的PVA纤维中 ,带状结构对纤维的轴向压缩变形行为有很大影响 .压缩变形后纤维中的带状结构仍然存在 ,但带状结构内的分子链与纤维轴发生倾斜 ,随压缩变形程度增大 ,在有利剪切应力发展的方向形成褶皱变形带 ,最后导致纤维中所有带状结构破坏 .X光衍射实验结果表明 ,对于具有带状结构的PVA纤维 ,( 1 0 1 ) [0 1 0 ]晶面系的滑移对其压缩变形过程有重要影响     

Thermomechanical and crystallization behavior of polylactide-based flax fiber biocomposites

In this work, the rheological, thermal and mechanical properties of melt-compounded flax fiber-reinforced polylactide composites were investigated. The effect of compounding on fiber length and diameter, and the relationship between fiber content and the crystallization behavior of the biocomposites, at various temperatures, were also examined. After melt-compounding, fiber bundles initially present were, to a large extent, broken into individual fibers and the fiber length was decreased by 75 %, while the aspect ratio was decreased by nearly 50 %. The crystallization half-time was found to decrease with increasing flax fiber content, and showed a minimum value at 105 °C for all systems. The elastic modulus was increased by 50 % in the presence of 20 wt% flax fibers. The addition of maleic anhydride-grafted polylactide had a positive effect on the mechanical properties of the biocomposite. This system is particularly interesting in the context of sustainable development as it is entirely based on renewable resources and biodegradable.     

Preparation of Zirconia Fibers via a Simple Aqueous Sol‐Gel Method

Polycrystalline tetragonal zirconia fiber was obtained by pyrolysis of precursor fibers from citrate‐acetate‐zirconium complex solution. The viscous zirconia sol with good spinnability was prepared by aging the starting solution of ZrOCl₂ · 8H₂O (ZOC) in the presence of acetic acid (HA) and citric acid (CA). The effects of molar ratio of zirconium cation to carboxylic acid and the aging time on the formation of spinnable sol were investigated. Thermogravimetric (TG) analysis, x‐ray diffraction (XRD), infrared (IR) spectra, and scanning electron microscope (SEM) techniques were used to characterize the sintered fibers. The results show that the fibers obtained at 1400°C are crack‐free with diameter of ca. 5–10 µm.