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1.
The protonation equilibria of uridine 5′-monophosphate disodium salt (UMP) was determined in binary solvent mixtures of water–methanol containing 0, 10, 15, 20, 25, 30, 35, 40, 45, and 50 % (v/v) methanol, using a combination of spectrophotometric and potentiometric methods at 25 °C and constant ionic strength (0.1 mol·dm?3 NaClO4). The protonation constants were analyzed using Kamlet, Abboud, and Taft parameters. A good linear correlation of the protonation constants (on the logarithmic scale) was obtained. Dual-parameter correlation of log10 K versus π* (dipolarity/polarizability) and α (hydrogen-bond donor acidity), as well as π* and β (hydrogen-bond acceptor basicity), gave good results in various aqueous solutions of methanol. Finally, the results are compared with CMP, a homolog of UMP, and are discussed in terms of the effect of the solvent on the protonation constants.  相似文献   

2.
Abstract

The stability constants of the 1:1 complexes formed between Mg2 +, Ca2 +, Sr2 +, Ba2 +, Mn2 +, Co2 +, Ni2 +, Cu2 +, Zn 2+ or Cd 2+ and orotidinate 5′-monophosphate (OMP3-) were determined by potentio-metric pH titrations in aqueous solution (I =0.1 M, NaNO3; 25°C). In addition to the stability constants of these M(OMP)? complexes, for several cases also the corresponding acidity constants for the release of the proton from the H(N-3) site were calculated; i.e., the formation of M(OMP-H)2- complexes was quantified. On the basis of recent measurements for simple phosphate monoesters [R-MP2-; R is a noncoordinating residue; S.S. Massoud and H. Sigel, Inorg. Chem., 27, 1447-1453 (1988)], evidence is provided that the somewhat increased stability of all the mentioned M(OMP)? complexes is mainly the result of a charge effect of the carboxylate group (in position 6 of OMP3-) and not of a direct participation in complex formation; i.e., there are no indications for the formation of significant amounts of macrochelates involving the phosphate and the carboxylate groups. This is different for the M(OMP-H)2- complexes of Co 2+ , Ni2+ and Cd2+: in these cases significant amounts of macrochelates form; i.e., the metal ion is not only coordinated to the phosphate group but also (in part) to the ionized ?(N-3) site, which is placed in the neighbourhood of the phosphate residue in the dominating syn conformation of this nucleotide. For the metal ions Mg2 +, Ca2+, Sr2 +, Ba2+ and Mn2 +, which have in general a rather low affinity for N binding sites, no evidence for the formation of macrochelates is detected. In addition, the stability constants of the ternary Cu(Arm)(OMP)? complexes, where Arm = 2,2′-bipyridyl or 1,10-phenanthroline, were determined by potentiometric pH titrations. Evaluation of the stability data shows that an equilibrium betweeen an ‘open’ isomer and a Cu(Arm)(OMP)? species with an intramolecular stack exists; the formation degree of these aromatic ring stacks reaches about 40 percent. Overall it is quite evident that OMP3- is a versatile ligand with remarkable properties which may be utilized by nature in recognition reactions during the intricate metabolic processes in which this nucleotide is involved.  相似文献   

3.
Potentiometric studies of the interaction of (Me2Sn)2+ and (Me3Sn)+ with 5′-guanosine monophosphate [(5′-HGMP)2?, abbreviated as (HL-1)2?] and guanosine [(HGUO), abbreviated as (HL-2)] in aqueous solution (I = 0.1 mol·dm?3 KNO3, 298.15 ± 0.1 K) were performed, and the speciation of various complex species was evaluated as a function of pH. The species that exist at physiological pH ~7.0 are Me2Sn(HL-1)/[Me2Sn(HL-2)]2+ (87.0/88.8 %), [Me2Sn(HL-1)(OH)]?/[Me2Sn(HL-2)(OH)]+ (3.0/0 %) and [Me2Sn(HL-1H?1)]/[Me2Sn(HL-2H?1)]2+ (9.4/6.6 %) for 1:1 dimethyltin(IV):5′-guanosine monophosphate/dimethyltin(IV): guanosine systems, whereas for the corresponding 1:2 systems, the species are Me2Sn(HL-1)/[Me2Sn(HL-2)]2+ (44.0/92.0 %), [Me2Sn(HL-1H?1)]/[Me2Sn(HL-2H?1)]2+ (5.0/6.0 %), Me2Sn(OH)2 (49.0/0 %), [Me2Sn(HL-1)(OH)]?/[Me2Sn(HL-2)(OH)]+ (1.5/2.0 %), and [Me2Sn(OH)]+ (1.0/0 %). For 1:1 trimethyltin(IV):5′-guanosine monophosphate/trimethyltin(IV):guanosine systems, only [Me3Sn(HL-1)]?/[Me3Sn(HL-2)]+ (99.9 %) are found at pH = 7.0, whereas for 1:2 systems, [Me3Sn(HL-1)]?/[Me3Sn(HL-2)]+ (49.8/100 %), Me3Sn(OH) (15.0/0 %) and [Me3Sn(HL-1)(OH)]2?/Me3Sn(HL-2)(OH) (0.2/0 %) are the species found. No polymeric species were detected. Beyond pH = 8.0, significant amounts of [Me2Sn(OH)]+, Me2Sn(OH)2, [Me2Sn(OH)3]? and Me3Sn(OH) are formed. Multinuclear (1H, 13C and 119Sn) NMR studies at different pHs indicated a distorted octahedral geometry for the species Me2Sn(HL-1)/[Me2Sn(HL-2)]2+ in dimethyltin(IV)-(HL-1)2?/(HL-2) systems and a distorted trigonal bipyramidal/distorted tetrahedral geometry for the species [Me3Sn(HL-1)]?/[Me3Sn(HL-2)]+ in trimethyltin(IV)-(HL-1)2?/(HL-2) systems.  相似文献   

4.
The photochemical reaction of potassium ferrocyanide (K\begin{document}$ _4 $\end{document}Fe(CN)\begin{document}$ _6 $\end{document}) exhibits excitation wavelength dependence and non-Kasha rule behavior. In this study, the excited-state dynamics of K\begin{document}$ _4 $\end{document}Fe(CN)\begin{document}$ _6 $\end{document} were studied by transient absorption spectroscopy. Excited state electron detachment (ESED) and photoaquation reactions were clarified by comparing the results of 260, 320, 340, and 350 nm excitations. ESED is the path to generate a hydrated electron (e\begin{document}$ _{\rm{aq}}^{-} $\end{document}). ESED energy barrier varies with the excited state, and it occurs even at the first singlet excited state (\begin{document}$ ^{1} $\end{document}T\begin{document}$ _{\rm{1g}} $\end{document}). The \begin{document}$ ^{1} $\end{document}T\begin{document}$ _{\rm{1g}} $\end{document} state shows \begin{document}$ {\sim} $\end{document}0.2 ps lifetime and converts into triplet [Fe(CN)\begin{document}$ _{6} $\end{document}]\begin{document}$ ^{4-} $\end{document} by intersystem crossing. Subsequently, \begin{document}$ ^{3} $\end{document}[Fe(CN)\begin{document}$ _{5} $\end{document}]\begin{document}$ ^{3-} $\end{document} appears after one CN\begin{document}$ ^{-} $\end{document} ligand is ejected. In sequence, H\begin{document}$ _{2} $\end{document}O attacks [Fe(CN)\begin{document}$ _{5} $\end{document}]\begin{document}$ ^{3-} $\end{document} to generate [Fe(CN)\begin{document}$ _{5} $\end{document}H\begin{document}$ _{2} $\end{document}O]\begin{document}$ ^{3-} $\end{document} with a time constant of approximately 20 ps. The \begin{document}$ ^{1} $\end{document}T\begin{document}$ _{\rm{1g}} $\end{document} state and e\begin{document}$ _{\rm{aq}}^{-} $\end{document} exhibit strong reducing power. The addition of uridine 5\begin{document}$ ' $\end{document}-monophosphate (UMP) to the K\begin{document}$ _{4} $\end{document}Fe(CN)\begin{document}$ _{6} $\end{document} solution decrease the yield of e\begin{document}$ _{\rm{aq}}^{-} $\end{document} and reduce the lifetimes of the e\begin{document}$ _{\rm{aq}}^{-} $\end{document} and \begin{document}$ ^{1} $\end{document}T\begin{document}$ _{\rm{1g}} $\end{document} state. The obtained reaction rate constant of \begin{document}$ ^{1} $\end{document}T\begin{document}$ _{\rm{1g}} $\end{document} state and UMP is 1.7\begin{document}$ {\times} $\end{document}10\begin{document}$ ^{14} $\end{document} (mol/L)\begin{document}$ ^{-1}\cdot $\end{document}s\begin{document}$ ^{-1} $\end{document}, and the e\begin{document}$ _{\rm{aq}}^{-} $\end{document} attachment to UMP is \begin{document}$ {\sim} $\end{document}8\begin{document}$ {\times} $\end{document}10\begin{document}$ ^{9} $\end{document} (mol/L)\begin{document}$ ^{-1}\cdot $\end{document}s\begin{document}$ ^{-1} $\end{document}. Our results indicate that the reductive damage of K\begin{document}$ _{4} $\end{document}Fe(CN)\begin{document}$ _{6} $\end{document} solution to nucleic acids under ultraviolet irradiation cannot be neglected.  相似文献   

5.
In this study we propose to coin the term Wolfium bond (WfB) to refer to a net attractive force (noncovalent interaction) between any element of group 6 and electron donor atoms (neutral molecules or anions) and to differentiate it from a coordination bond (metal-ligand interaction). We provide evidence of the existence of this interaction by inspecting the X-ray crystal structure of proteins containing Molybdopterin and Tungstopterin cofactors from the Protein Data Bank (PDB). The plausible biological role of the interaction as well as its physical nature (antibonding Wf-Ligand orbital involved) are also analyzed by means of ab initio calculations (RI-MP2/def2-TZVP level of theory), Atoms in Molecules (AIM), Natural Bond Orbital (NBO) and Noncovalent Interactions plot (NCIplot) analyses.  相似文献   

6.
Sound speeds have been measured for aqueous solutions of the nucleosides adenosine, cytidine, and uridine at T = (288.15 and 313.15) K and at ambient pressure. The partial molar isentropic compressions at infinite dilution, \( K_{S,2}^{\text{o}} \), were derived from the speed of sound data. The partial molar heat capacities at infinite dilution, \( C_{p,2}^{\text{o}} \), for the three nucleosides at T = (288.15 and 313.15) K were also determined. These \( K_{S,2}^{\text{o}} \) and \( C_{p,2}^{\text{o}} \) results, along with partial molar isobaric expansions at infinite dilution, \( E_{2}^{\text{o}} = \, (\partial V_{2}^{\text{o}} /\partial T)_{p} \), that were derived using data from the literature, were used to evaluate the partial molar isothermal compressions at infinite dilution, \( K_{T,2}^{\text{o}} \{ K_{T,2}^{\text{o}} = - \, (\partial V_{2}^{\text{o}} /\partial p)_{T} \} \), for the nucleosides. The \( K_{T,2}^{\text{o}} \) results were rationalized in terms of nucleoside hydration and its temperature dependence.  相似文献   

7.
Equilibrium constants for the formation of 1 : 1 inclusioncomplexes of -cyclodextrin (-CD) with neutral and anionic phenol derivatives (3- and 4-cyanophenols and 3- and 4-nitrophenols) have been evaluated at 5, 12, 25, and 35 °C by means of spectrophotometry. Similarly, the equilibrium constants have been determined for the inclusion complexes of-cyclodextrin (-CD) with the phenols. Enthalpy and entropy changes for the formationof the inclusion complexes have been estimated from the temperature dependences of theequilibrium constants. With -CD, the enthalpy andentropy changes for the anionic species have been found to be more negative than those for the neutral ones, except for 4-cyanophenol, suggesting that the inclusion complexes of the anionic species are more rigid than those of the neutral species. From analyses of chemical shift differences in 13C NMR spectra of 3- and 4-cyanophenolsand 3- and 4-nitrophenols in aqueous solutions with and without CDs, a nitro ora cyano group has been found to be first bound to the - and -CD cavities.  相似文献   

8.
The influence of DNA on the cistrans equilibrium and fluorescent properties of 3,3-diethyl-9-thiomethylthiacarbocyanine iodide (DTTC) in a phosphate buffer (pH 7) was studied by various photochemical techniques. The interaction of dye molecules with DNA leads to the formation of stable noncovalently bonded complexes. Data obtained from DTTC absorption and fluorescence spectra suggest that complexation proceeds primarily through the cis-form of the dye. Complexation with DNA leads to a substantial increase in the quantum yield of the triplet state of DTTC molecules. The rate constant for quenching the dye triplet state by oxygen turned out to be significantly lower than the diffusion-controlled value.  相似文献   

9.
The interactions between -cyclodextrin and a hydrosoluble polymer carrying hydrophobic residues: poly(4-sodium styrenesulfonate) have been studied. Several techniques were used: capillary viscosimetry, circular dichroïsm, and NMR spectroscopy. The results proved that the aromatic residues of NaPSS were included in the cavity of -cyclodextrin, and that, in addition, a network of hydrogen bonding between sulfonic acid residues and the hydroxyl groups of -cyclodextrin occured.  相似文献   

10.
Density measurements of good precision are reported for aqueous and aqueous salt (KBr) solutions containing 2,2,2-cryptand (4,7,13,16,21,24-hexaoxa-1,10-diazabicyclo[8.8.8]hexacosane) (~0.009 to ~0.24 mol·kg?1) for the binary systems and for the ternary system with ~0.1 mol·kg?1 2,2,2-cryptand and varying KBr concentrations (~0.06 to ~ 0.16 mol·kg?1) at 298.15 K. The density data have been used to study the variation of apparent molar volume (\( \varphi_{V} \)) of 2,2,2-cryptand and of KBr as a function of concentration. 2,2,2-Cryptand is a diamine and hence it is hydrolyzed in aqueous solutions and needs an appropriate methodology to obtain meaningful thermodynamic properties. We have adopted a method of hydrolysis correction developed initially by Cabani et al. and later by Kaulgud et al. to analyze our volumetric data for the aqueous solutions. The method is described and we were successful in obtaining the limiting partial molar volume of the bare (free) cryptand in water at 298.15 K. Volumes of ionization as well as volumes of complexation (with KBr) are calculated. Estimations of the apparent molar volume of 2,2,2-cryptand in CCl4 are also reported. There is a loss in volume for the cryptand on transferring it from CCl4 to water. The volume changes due to ionization for the cryptand in water are calculated to be –20.5 and –0.6 cm3·mol?1 for the mono- and di-protonation equilibria respectively, while the volume of complexation for K+ is +24.5 cm3·mol?1. The results are discussed in terms of conformation, protonation equilibria and selective encapsulation of K+ ions in cryptand cavities. The solution volume properties seem to depend upon water–solute interaction as well on the solute–solute association because of hydrophobic interactions caused by lowering of the charge density on formation of cryptand-K+ species in solution.  相似文献   

11.
In this study, both experimental and theoretical approaches, including absorption spectra, fluorescence emission spectra, 1H- and 31P-NMR, electrospray ionization mass spectrometry (ESI-MS), pH-potentiometry and theoretical approaches using the BEST & SPE computer programs were applied to study the competitive complexation between ciprofloxacin (CIP) and b-nicotinamide adenine dinucleotide phosphate (NADP) with aluminum (III) in aqueous solutions. Rank annihilation factor analysis (RAFA) was used to analyze the absorption and fluorescence emission spectra of the ligands, the binary complexes and the ternary complexes. It is found, at the mM total concentration level and pH = 7.0, the bidentate mononuclear species [Al(CIP)]2+ and [Al(NADP)] predominate in the aqueous solutions of the Al(III)-CIP and Al(III)-NADP systems, and the two complexes have similar conditional stability constants. However, the pH-potentiometry results show at the mM total concentration level and pH = 7.0, the ternary species [Al(CIP)(HNADP)] predominates in the ternary complex system. Comparing predicted NMR spectra with the experimental NMR results, it can be concluded that for the ternary complex, CIP binds to aluminum ion between the 3-carboxylic and 4-carbonyl groups, while the binding site of oxidized coenzyme II is through the oxygen of phosphate, which is linked to adenosine ribose, instead of pyrophosphate. The results also suggested CIP has the potential to be a probe molecular for the detection of NADP and the Al(III)-NADP complexes under physiological condition.  相似文献   

12.
IntroductionAvarietyofnewpolyaminopolycarboxylateligandsandtheirlanthanidecomplexeshavebeensynthesizedinrecentyearsbecauseoft...  相似文献   

13.
Experimental determination of density, ultrasonic velocity and viscosity of two pyrimidine bases thymine and cytosine along with their respective nucleosides, thymidine and cytidine has been carried out in aqueous urea solutions in the presence of different concentrations of three salts, viz. NaCl, KCl and CaCl2. The experimental data have been used for the computation of various thermodynamic parameters, viz. apparent molar volume, apparent molar compressibility, coefficients A and B of the Jones-Dole equation, internal pressure, acoustic impedance, etc. Structural studies of solutions under investigation have also been carried out by ultraviolet spectroscopy, and an attempt has been made to collaborate the findings of ultraviolet spectroscopy with results obtained thermodynamically.  相似文献   

14.
Sound speeds have been measured for aqueous solutions of the nucleoside thymidine at T = 298.15 K and at the pressures p = (10, 20, 40, 60, 80, and 100) MPa. The partial molar volumes at infinite dilution, $ V_{2}^{\text{o}} $ , the partial molar isentropic compressions at infinite dilution, $ K_{S,2}^{\text{o}} $ , and the partial molar isothermal compressions at infinite dilution, $ K_{T,2}^{\text{o}} $ $ \{ K_{T,2}^{\text{o}} = - (\partial V_{2}^{\text{o}} /\partial p)_{T} \} $ , have been derived from the sound speeds at elevated pressures using methods described in our previous work. The $ V_{2}^{\text{o}} $ and $ K_{T,2}^{\text{o}} $ results were rationalized in terms of the likely interactions between thymidine and the aqueous solvent. The $ V_{2}^{\text{o}} $ results were also compared with those calculated using the revised Helgeson–Kirkham–Flowers (HKF) equation of state.  相似文献   

15.
Complexes of copper(II) with a number of polyphosphate and polymetaphosphate anions have been studied in aqueous solutions by potentiometric, spectroscopic and theoretical methods. Stability constants of the complexes have been determined as well as their coordination modes. Results of the equilibrium studies provided evidence for the formation of ML, MHL and ML(OH) x type complexes with the ligands studied. The length of the polyphosphate chain was found to affect the oxygen atom charge that is reflected in the stability constants of the ML type complexes. Moreover, the stability of the complex is also influenced by the spatial arrangement of the phosphate groups in phosphates and metaphosphates. The spectral parameters observed for certain complexes have permitted us to deduce the inner coordination sphere of the studied complexes.  相似文献   

16.
Equilibrium constant measurements have been performed potentiometrically at (25±0.1) °C and an ionic strength I=0.1 mol⋅dm−3 KNO3 for the interaction of La(III), Ce(III), Pr(III) and Er(III) with the purine nucleotides adenosine 5′-mono, 5′-di, and 5′-triphosphate and with the biologically relevant secondary ligand zwitterionic buffers 3-(cyclohexyl amino)-1-propanesulfonic acid (CAPS), 3-(cyclohexylamino)-2-hydroxy-1-propane sulfonic acid (CAPSO), N-tris(hydroxymethyl)methyl-3-aminopropanesulfonic acid (TAPS), 3-[N-bis(hydroxyethyl)amino]-2-hydroxypropanesulfonic acid (DIPSO), N,N-bis(2-hydroxyethyl)glycine (BICINE), and N-(2-acetamido)-2-iminodiacetic acid (ADA) in a 1:1:1 ratio. The formation of various 1:1:1 normal and protonated mixed-ligand complex species was inferred from the potentiometric pH titration curves. The experimental conditions were selected such that self-association of the purine nucleotides and their complexes was negligibly small; that is, the monomeric normal and protonated ternary complexes were studied. Initial estimates of the formation constants of the resulting species and the acid dissociation constants of adenosine 5′-mono-, 5′-di-, and 5′-triphosphate and the zwitterionic buffer secondary ligands were refined with the Superquade computer program. In some Ln(III) mixed-ligand systems, interligand interactions between the coordinating ligands, possibly involving H-bond formation, have been found to be the most important factors in deciding the stability of the mixed-ligand complexes in solutions. The thermodynamic ΔG° values of the monomeric normal and protonated ternary complexes were calculated and discussed.  相似文献   

17.
Introduction  Non covalentinteractionshaveabiginfluenceontheconformationalorganizationofthebiomoleculeswhichisresponsiblefortheregio andstereo specificityofvariousbiologicalprocesses .1Amongtheseinteractions ,thein tramolecularstackinginteractionbetweens…  相似文献   

18.
The mechanism of substitution from tetrahedral [ZnCl2(en)] and square-pyramidal [ZnCl2(terpy)] complexes (where en = 1,2-diaminoethane or ethylenediamine and terpy = 2,2′:6′,2′′-terpyridine) by guanosine-5′-monophosphate (5′-GMP) have been investigated by 1H NMR spectroscopy. The substitution reaction of [ZnCl2(terpy)] complex is faster than the reaction of [ZnCl2(en)], which was finished after 48?h. Information about the structures of the final products in solution were obtained from the DFT calculations (B3LYP/6-31G(d)) and experimental 1H NMR data acquired during the course of the reaction. The cytotoxic activity of zinc(II) complexes was tested on human breast cancer cell line MDA-MB-231, human colon cancer cell line HCT-116 and normal human lung fibroblast cell line MRC-5. Both complexes reduced cell viabilities, while [ZnCl2(terpy)] was significantly cytotoxic on MDA-MB-231 after 72?h, and HCT-116 after 24?h without dose dependence. The differences in reactivity toward 5′-GMP and cytotoxic activity of Zn(II) complexes may be attributed to the very stable square-pyramidal geometry of [ZnCl2(terpy)] in solution, while weak ligand effect of the en compared to the terpy affected slow interaction of tetrahedral [ZnCl2(en)] complex with the target bio-molecule.  相似文献   

19.
This paper reviews the results of electronic structure studies and investigations of the nature of chemical bonding and properties of binary d-metal carbides in the crystalline and molecular states. X-ray emission and X-ray photoelectron spectroscopy as well as quantum-chemical data are analyzed, and variations of the electronic properties and interatomic interactions are discussed for carbides of high-melting metals doped on the metal sublattice and a series of their reciprocal solid solutions: NbC–TaC, TiC–VC0.87, TiC–NbC, and NbC–MoC0.67 over a wide range of compositions. Prospects are discussed for application of quantum-chemical methods to structure and property modeling and forecasting for a new class of molecular clusters — binary metallocarbohedrenes M8-n Mn C12 and related metal–carbon nanoparticles of mixed composition.  相似文献   

20.
A eutectic mixture of L-menthol and malonic acid, Me / MA (4 : 1), was characterized by calorimetry and other physical measurements. The new deep eutectic solvent (m.p. 6 °C) solvates 338 mg of ibuprofen per mL, and the solution is stable in a wide temperature range. Strategies of NMR titration used in supramolecular chemistry were employed to explore binding forces between the eutectic constituents as well as solute-solvent interaction in ibuprofen solution. Even in acetonitrile, Me 4 MA is formed through a hydrogen-bonding network, where the constituents act as hydrogen donors and acceptors at the same time. The estimated association constant is around 30 M−1; the binding forces are enough to build the eutectic mixture at high concentrations. The aggregate Me 4 MA forms a molecular complex with ibuprofen in acetonitrile as a result of the cooperative effect of the constituents. In addition, van der Waals interactions are operative between ibuprofen and menthol in the saturated IB - Me / MA (4 : 1) solution.  相似文献   

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