A facile two synthon approach to the camptothecin skeleton

A synthesis of deethyldesoxycamptothecin via the reaction of two readily accessible synthons is described. One of the synthons constitutes the ABC ring system of camptothecin, while the second provides all the C atoms of the rings D and E. The synthetic approach is suited for the total synthesis of camptothecin analogues.     

New aromatic annulation reaction via a C14 enaminone synthon: synthesis of ‘terpenoid-like chalcones’

Diverse functionalized synthons from a new enaminone are reported. These synthons were easily obtained in a one pot process starting from a compound derived from β-ionone. A new annulation reaction of this C-14 compound with several anions led to new ‘terpenoid-like’ chalcones.     

Reagent Selector: using Synthon Analysis to visualize reagent properties and assist in combinatorial library design

Reagent Selector is an intranet-based tool that aids in the selection of reagents for use in combinatorial library construction. The user selects an appropriate reagent group as a query, for example, primary amines, and further refines it on the basis of various physicochemical properties, resulting in a list of potential reagents. The results of this selection process are, in turn, converted into synthons: the fragments or R-groups that are to be incorporated into the combinatorial library. The Synthon Analysis interface graphically depicts the chemical properties for each synthon as a function of the topological bond distance from the scaffold attachment point. Displayed in this fashion, the user is able to visualize the property space for the universe of synthons as well as that of the synthons selected. Ultimately, the reagent list that embodies the selected synthons is made available to the user for reagent procurement. Application of the approach to a sample reagent list for a G-protein coupled receptor targeted library is described.     

A practical synthes of α,β-unstaurated iron acyls. Chiral enoate synthesis.

A simple preparation of α,β-unsaturated iron acyls is described. The title compounds are very useful as chiral enoate synthons.     

Extending the supramolecular synthon based fragment approach (SBFA) for transferability of multipole charge density parameters to monofluorobenzoic acids and their cocrystals with isonicotinamide: importance of C-H···O, C-H···F, and F···F intermolecular regions

An extension of the supramolecular synthon-based fragment approach (SBFA) method for transferability of multipole charge density parameters to include weak supramolecular synthons is proposed. In particular, the SBFA method is applied to C-H···O, C-H···F, and F···F containing synthons. A high resolution charge density study has been performed on 4-fluorobenzoic acid to build a synthon library for C-H···F infinite chain interactions. Libraries for C-H···O and F···F synthons were taken from earlier work. The SBFA methodology was applied successfully to 2- and 3-fluorobenzoic acids, data sets for which were collected in a routine manner at 100 K, and the modularity of the synthons was demonstrated. Cocrystals of isonicotinamide with all three fluorobenzoic acids were also studied with the SBFA method. The topological analysis of inter- and intramolecular interaction regions was performed using Bader's AIM approach. This study shows that the SBFA method is generally applicable to generate charge density maps using information from multiple intermolecular regions.     

Versatile 2,7-substituted pyrene synthons for the synthesis of pyrene-fused azaacenes

A new synthetic route to prepare a series of versatile 2,7-substituted pyrene synthons for the synthesis of pyrene-fused azaacenes is described. By using such synthons, a library of eight pyrene-fused azacenes with different electronic structures and in most cases with enhanced solubility has been synthesized and characterized.     

Maximum symmetrical split of molecular graphs. Application to organic synthesis design

Whereas the potential symmetry of a molecule may be a feature of importance in synthesis design, this one is often difficult to detect visually in the structural formula. In the present article, we describe an efficient algorithm for the perception of this molecular property. We have addressed this problem in terms of graph theory and defined it as the Maximum Symmetrical Split of a molecular graph. A solution is obtained by deleting in such a graph a minimum number of edges and vertices so that the resulting subgraph consists of exactly two isomorphic connected components that correspond to a pair of synthetically equivalent synthons. In view to reduce the search space of the problem, we have based our algorithm on CSP techniques. In this study, we have found that the maximum symmetrical split is an original kind of Constraint Satisfaction Problem. The algorithm has been implemented into the RESYN_Assistant system, and its performance has been tested on a set of varied molecules which were the targets of previously published synthetic studies. The results show that potential symmetry is perceived quickly and efficiently by the program. The graphical display of this perception information may help a chemist to design reflexive or highly convergent syntheses.     

Electron impact mass spectrometry of some benzodioxole derivatives of pharmacological interest,their synthons and synthetic intermediates

The mass spectrometric behaviour of two newly synthesized β-blocking benzodioxole derivatives, their synthons and synthetic intermediates has been studied in detail with the aid of exact mass measurements, linked scans, collisionally activated decomposition mass analysed ion kinetic energy spectra and deuterium labelling experiments. A retrosynthetic process, leading to the original synthons, is described.     

Library Design Guided by In-house Developed Computer Tools

In recent years, combinatorial library synthesis for drug discovery begins to migrate from library synthesis solely dictated by chemistry availability to design and synthesis of libraries with more drug-like properties. Lipinski's rule of five has been used to evaluate drug-like properties of individual compound; recently LibProTM, a new computation program has been developed at Pharmacopeia to evaluate durg-like properties of libraries. By using LibPrpTM, chemists at Pharmacopeia are able to obtain information of molecular weight and ClogP distribution of a library, and percentage of library members that violate Lipinski's rule after input structures of synthons for each combinatorial step. Currently, a "virtual library design” approach that is to calculate properties of a library at conceptual phase of the library design has been used to predetermine the value of the library. Also a new computer program used to predict "Absorption” of compounds will also be discussed.     

A mathematical model of realistic constitutional chemistry. A synthon approach. I: An algebraic model of a synthon

A mathematical model of a synthon is suggested. The synthon is modelled by a special so-calledS-matrix. The notion of isomeric synthons on the set of atoms A and that of a Family of Isomeric SynthonsFIS (A) is introduced. The chemical reaction is represented by a matrix equation and it is modelled by the so-calledSR-matrix. The notion of the reaction distance (RD) between two isomeric synthons is defined. A mathematical theory of the S andSR-matrices is developed.     

Crystal structure prediction of aminols: advantages of a supramolecular synthon approach with experimental structures

The supramolecular synthon approach to crystal structure prediction (CSP) takes into account the complexities inherent in crystallization. The synthon is a kinetically favored unit, and through analysis of commonly occurring synthons in a group of related compounds, kinetic factors are implicitly invoked. The working assumption is that while the experimental structure need not be at the global minimum, it will appear somewhere in a list of computationally generated structures so that it can be suitably identified and ranked upward using synthon information. These ideas are illustrated with a set of aminophenols, or aminols. In the first stage, a training database is created of the 10 isomeric methylaminophenols. The crystal structures of these compounds were determined. The prototypes 2-, 3-, and 4-aminophenols were also included in the training database. Small and large synthons in these 13 crystal structures were then identified. Small synthons are of high topological but low geometrical value and are used in negative screens to eliminate computationally derived structures that are chemically unreasonable. Large synthons are more restrictive geometrically and are used in positive screens ranking upward predicted structures that contain these more well-defined patterns. In the second stage, these screens are applied to CSP of nine new aminols carried out in 14 space groups. In each space group, up to 10 lowest energy structures were analyzed with respect to their synthon content. The results are encouraging, and the predictions were classified as good, unclear, or bad. Two predictions were verified with actual crystal structure determinations.     

Synthesis of ketomethylene analogs of dipeptides

A convenient method of synthesizing ketomethylene dipeptides by using homoallylic Grignard reagents as amino acid analog synthons is described.     

The nature of halogen...halide synthons: theoretical and crystallographic studies

Two types of halogen...halide synthons are investigated on the basis of theoretical and crystallographic studies; the simple halogen...halide synthons and the charge assisted halogen...halide synthons. The former interactions were investigated theoretically (ab initio) by studying the energy of interaction of a halide anion with a halocarbon species as a function of Y...X- separation distance and the C-Y...X- angle in a series of complexes (R-Y...X-, R=methyl, phenyl, acetyl or pyridyl; Y=F, Cl, Br, or I; X-=F-, Cl-, Br-, or I-). The theoretical study of the latter interaction type was investigated in only one system, the [(4BP)Cl]2 dimer, (4BP=4-bromopyrdinium cation). Crystal structure determinations, to complement the latter theoretical calculations, were performed on 13 n-chloropyridinium and n-bromopyridinium halide salts (n=2-4). The theoretical and crystallographic studies indicate that these interactions are controlled by electrostatics and are characterized by linear C-Y...X- angles and separation distances less than the sum of van der Waals radius (rvdW) of the halogen atom and the ionic radii of the halide anion. The strength of these contacts from calculations varies from weak or absent, e.g., H3C-Cl...I-, to very strong, e.g., HCC-I...F- (energy of interaction ca. -153 kJ/mol). The strengths of these contacts are influenced by four factors: (a) the type of the halide anion; (b) the type of the halogen atom; (c) the hybridization of the ipso carbon; (d) the nature of the functional groups. The calculations also show that charge assisted halogen...halide synthons have a comparable strength to simple halogen...halide synthons. The nature of these contacts is explained on the basis of an electrostatic model.     

A survey of tellurium-centered secondary-bonding supramolecular synthons

The crystal structures of tellurium compounds frequently display intermolecular contacts between the chalcogen and atoms possessing lone pairs of electrons. Analysis of the data deposited in the Cambridge crystallographic database shows that the shortest secondary bonding interactions (SBIs) are formed when oxygen, nitrogen or chlorine are the donor atoms for SBIs. In addition, these SBIs are shortest when they occur opposite to a bond between tellurium and oxygen, nitrogen, fluorine, chlorine or the nitrile functional group. The structural motifs assembled in these systems fall within eight general categories, from single to multiple bonded supramolecular synthons. The use of multiple points of attachment between molecules leads, in principle, to stronger and more directional supramolecular synthons. The overall structures assembled by the most important tellurium-based supramolecular synthons and prospects for their application in crystal engineering are discussed.     

A concise synthesis of spirotryprostatin A

The preparation of two new synthons, 2,5- and 2,6-dibromotryptophan esters, and their use in diastereoselective intramolecular N-acyliminium ion spirocyclization methodology for the rapid construction of spirotryprostatin A and analogues are described.     

Synthesis of 2-Propargylaminoethanols from α,β-acetylenic aldimines

A method of synthesis of 2-propargylaminoethanols, perspective synthons for a one-pot synthetic technology excluding isolation of unstable prop-2-ynylideneaminoethanols is developed. A number of 2-propargylaminoethanol hydrochloride derivatives are synthesized, and their ¹H and ¹³C NMR spectra were discussed.     

Construction of C2-Spirocyclopropyl-Indolin-3-Ones through Base-Promoted [2+1] Annulation Reaction of Indolin-3-ones with Bromosulfonium Salts

A simple base-promoted [2+1] annulation of indolin-3-ones and bromosulfonium salts has been developed in this article. This strategy uses simple and easily prepared indolin-3-ones 1 as C1 synthons and bromosulfonium salts 2 as C2 synthons under mild reaction conditions, and 33 examples of C2-spirocyclopropyl-indolin-3-ones were obtained with up to 99 % yield and >20 : 1 dr.     

Addition of arylboronic acids to arylpropargyl alcohols en route to indenes and quinolines

A regio- and stereoselective rhodium-catalyzed synthesis of trisubstituted allylic alcohols is described. The utility of these synthons is demonstrated in a convenient synthesis of indenes and quinolines.     

Structural diversity-guided convenient construction of functionalized polysubstituted butenolides and lactam derivatives

A molecular diversity-oriented convenient access to multi-substituted butenolides and lactam scaffolds via four different methods from various phenylacetic acid derivatives is described. The target molecules have been identified on the basis of analytical spectra data, and are useful synthons in the fields of medicine and agrochemicals.     

L-(-)-Menthol in the Synthesis of Key Synthons for Optically Active Methyl-Branched Insect Pheromones

A synthesis of optically active 4S-methylhexanal, 1-bromo-3S-methylheptane, and 1-bromo-3S-methylundecane, which are key synthons for several methyl-branched insect pheromones, that is based on chemically selective transformations of 6-tosyloxy- and 6-iodoisopropyl-4R-methylhexanoates that are available from L-(-)-menthol was proposed. __________ Translated from Khimiya Prirodnykh Soedinenii, No. 6, pp. 592–593, November–December, 2005.