Structural determination of glucosylceramides isolated from marine sponge by fast atom bombardment collision‐induced dissociation linked scan at constant B/E

Five glucosylceramides (GlcCers) were isolated by reversed phase high‐performance liquid chromatography from the MeOH extracts of a marine sponge, Haliclona (Reniera) sp., collected from the coast of Ulleung Island, Korea, and analyzed by fast atom bombardment mass spectrometry (FAB–MS) in positive‐ion mode. FAB‐mass spectra of these compounds included protonated molecules [M + H]⁺ and abundant sodiated molecules [M + Na]⁺ from a mixture of m‐NBA and NaI. The structures of these GlcCers, which were similar, were elucidated by FAB‐linked scan at constant B/E. To find diagnostic ions for their characterization, the GlcCers were analyzed by collision‐induced dissociation (CID) linked scan at constant B/E. The CID‐linked scan at constant B/E of [M + H]⁺ and [M + Na]⁺ precursor ions resulted in the formation of numerous characteristic product ions via a series of dissociative processes. The product ions formed by charge‐remote fragmentation provided important information for the characterization of the fatty N‐acyl chain moiety and the sphingoid base, commonly referred to as the long‐chain base. The product ions at m/z 203 and 502 were diagnostic for the presence of a sodiated sugar ring and β‐D ‐glucosylsphinganine, respectively. For further confirmation of the structure of the fatty N‐acyl chain moiety in each GlcCer, fatty acid methyl esters were obtained from the five GlcCers by methanolysis and analyzed by FAB–MS in positive‐ion mode. On the basis of these dissociation patterns, the structures of the five GlcCers from marine sponge were elucidated. In addition, the accurate mass measurement was performed to obtain the elemental composition of the GlcCers isolated from marine sponge. Copyright © 2009 John Wiley & Sons, Ltd.     

Formation and fragmentation of the [M + Na]+ ion of glycosides in fast atom bombardment mass spectrometry

Positive-ion fast atom bombardment (FAB) mass spectra of flavonol and steroid glycosides with sodium chloride added showed well known characteristic features; of the appearance of [M + Na]⁺ peaks, disappearance of [M + H]⁺ peaks and a significant decrease in the peak heights of fragment ions. Compared with the features in the FAB mass spectra of crown ethers with addition of salt, and above features suggest a complexation between Na⁺ and the glycosides in matrix solution. The B/E-constant linked scanning technique was used to obtain structural information of the [M + Na]⁺ ion of the glycosides. The B/E spectra gave the daughter-ion peaks, suggesting that coordination of Na⁺ with the biosides and triosides occurs at the sugar moiety, whereas the coordination with the monoglycosides occurs at the aglycone moiety, except for monoglycosides in which the aglycone moiety does not contain significant oxygen functional groups such as OH and CO.     

Formation of M+ ions and electronic excitation under fast-atom bombardment conditions by using a liquid matrix

Japan The mechanism for the formation of molecular ions M^+· under fast-atom bombardment (FAB) conditions with a liquid matrix is discussed on the basis of the mass spectra of pyrene, coronene, and fullerene C₆₀ obtained by using electron impact, gas-phase fast-atom bombardment, and gas-phase fast-molecule bombardment techniques. The obtained results suggest that formation of the M^+· ions under FAB conditions is not due to direct collisions between analytes M and fast atoms A, but is due to collision interactions between M and recoiling matrix molecules B or matrix ions. It has been confirmed, furthermore, that the FAB conditions with a liquid matrix are sufficient in energy for formation of singly charged ions M^+· and insufficient for the formation of multiply charged ions M ^z+ (z=2, 3) of pyrene, coronene, and C₆₀.     

Use of fast atom bombardment mass spectrometry for the characterization of nitroaromatic isomers

Positive and negative ion fast atom bombardment (FAB) mass spectra of some monosubstituted nitroaromatic isomers are reported. Generally ions carresponding to [M + H]⁺ and M⁺ are observed in the positive ion FAB spectra; ions such as [M ? H] ^? and M^?˙ are observed in the negative ion FAB spectra. The use of FAB mass spectra to distinguish the isomers is discussed. Comparisons of FAB, chemical ionization and electron impact mass spectra of the same isomers (wherever possible) are reported. The structural information obtained in the negative ion FAB spectra complement those obtained in the positive ion FAB spectra.     

Electron impact and field desorption mass spectrometry of some macrocyclic-acyclic polyether-ester compounds

The electron impact mass spectrometric behaviour of a series of macrocyclic-acyclic polyether-ester compounds containing an isoxazole, benzene or pyridine ring is discussed in detail with the aid of exact mass measurements and metastable ions (linked scans B/E and B²/E). The nature of unusual [M+H]⁺ species, present in the crown moieties only, is elucidated by means of low electron energy measurements and labelling experiments. The field desorption spectra show only intense peaks corresponding to [M+H]⁺ species and rule out the presence of dimeric moieties.     

Tetramethylsilane chemical ionization mass spectrometry of some isomeric unsaturated dicarboxylic acids and esterst

The tetramethylsilane (TMS) chemical ionization (CI) mass spectra of some geometrical isomers of unsaturated dicarboxylic acids, esters and isomeric phthalic acids reveal explicit differences. The (E)-acids show an abundant [M + 73 ? CH₄]⁺Ion whereas the (Z)-acids exhibit a strong [M + 73 ? H₂O]⁺ ion in their TMS CI spectra. The loss of CH₄ from the adduct of fumaric acid has been confirmed by the study of fumaric acid-d₂ and B/E linked scan studies. In the case of esters, the TMS CI spectra of (E)-isomers contain abundant [M + 73]⁺ adduct ions, whereas these are weakly abundant in the TMS CI of the (Z)-isomers.     

Fast atom bombardment (FAB) mass spectrometry of piperidine N-oxide derivatives and free radical quenching under FAB conditions

Mechanisms are proposed for the formation of M⁺, [M + 2H]⁺ and [M + 3H]⁺ ions in the fast atom bombardment (FAB) mass spectra of 4-(2,2,6,6-tetramethyl-1-oxyl)-piperidol and its carboxylates. Free radical quenching induced by the fast atom beam has been observed. The effects of temperature on the radical quenching and of acid on the FAB mass spectra are discussed. The experiment showed that the volatile liquid samples with vapour pressures higher than that for glycerol produced M⁺ even-electron molecular ions, and the FAB mass spectra were similar to the corresponding electron ionization mass spectra. For the solid samples, it was found that the free radicals were quenched during the FAB process so that the mononitroxide and dinitroxide compounds produced [M + 2H]⁺ and [M + 3H]⁺ ions, respectively. Further experiments showed that the intensities and stabilities of [M + 2H]⁺ and [M + 3H]⁺ ions could be improved by addition of acids.     

Fast atom bombardment mass spectral study of tetracycline antibiotics

In the fast atom bombardment mass spectra of tetracyclines, ammonia elimination fragment ions, [M + H – NH₃]⁺ and [M + H – NH₃ – H₂O]⁺, appeared with considerable abundances. A plausible mechanism for the loss of ammonia from [M + H]⁺ was discussed based on results by measurements on various types of tetracyclines and benzamides as the model compounds and B/E linked scanning. The results indicated that the loss of ammonia occurred in the carboxyamide moiety in the A ring and was accelerated by an ortho-hydroxy group. The same fragmentations were observed in the electrospray mass spectra of tetracyclines with a skimmer-capillary voltage differential of 150 V.     

Ion-molecule reactions observed for nitroaromatic compounds in negative ion fast atom bombardment mass spectrometry

Analyses of a series of nitroaromatic compounds using fast atom bombardment (FAB) mass spectrometry are discussed. An interesting ion-molecule reaction leading to [M + O ? H]^? ions is observed in the negative ion FAB spectra. Evidence from linked-scan and collision-induced dissociation spectra proved that [M + O ? H]^? ions are produced by the following reaction: M + NO₂^? → [M + NO₂]^? → [M + O ? H]^?. These experiments also showed that M^?˙ ions are produced in part by the exchange of an electron between M and NO₂^? species. All samples showed M^?˙, [M ? H]^? or both ions in their negative ion FAB spectra. Not all analytes studied showed either [M + H]⁺ and/or M⁺˙ in the positive ion FAB spectra. No M⁺˙ ions were observed for ions having ionization energies above ～9 eV.     

Ortho effects in organic molecules on electron impact part 22. Competing oxygen transfers from the nitro group to sulphur and the olefinic double bond in 2-nitrophenyl styryl sulphides

Double oxygen migration to sulphur from the ortho-nitro group leading to eliminations of SO₂ and ^·SO₂H from the molecular ions and single oxygen transfer to the olefinic double bond in the side-chain giving rise to the most abundant ion at m/z 138 have been observed in 2-nitrophenyl styryl sulphides on electron impact. The proposed fragmentation mechanisms and the product ion structures were confirmed with the aid of high-resolution data, B/E linked scan and CID spectra.     

EIMS study of new isomeric N-substituted hydrazones of 2-(3- and 4-)-pyridinecarboxaldehydes

EI induced mass spectral fragmentations of twelve new hydrazones of 2-(3- and 4-)-pyridinecarboxaldehydes and hydrazides of (E)-stilbenyloxyacetic acid as well as N-(E)-stilbenyloxyalkylcarbonyl substituted amino acids were investigated. Fragmentations pathways are proposed on the basis of accurate mass and B/E linked scan spectra measurements. The correlation between the intensities of M^+. and the selected fragment ions of these compounds is discussed. The data obtained create the basis for distinguishing isomers.     

Fast atom bombardment mass spectra of telluronium salts

The fast atom bombardment (FAB) mass spectra of telluronium salts were studied. The spectra exhibit the intact cation (C⁺) and cluster ions ([M + C]⁺). The principal fragment ions in the FAB mass spectra of telluronium salts are [RTe]⁺, [R₂Te]⁺˙, [R₂Te − H]⁺, [RTeR′]⁺˙, and [RTeR′ + H]⁺. When the anion was [BPh₄]⁻, interesting cluster ions such as [M + C − BPh₃]⁺ appeared.     

Mass spectra of doubly charged ions

The mass spectra of biological molecules, whose molecular mass exceeds 10 kDa, invariably contain multiply charged ions. For example, a survey scan of a small protein will produce singly, doubly and triply protonated molecules, the intensity of the doubly charged species often being greater than that of the singly charged entity. Although the spectra resulting from doubly charged peptides have not previously been studied, collisional activation of such doubly charged species may result in significant additional information pertaining to molecular structure. The techniques employed to study ions originating from multiply charged species were linked scanning of constant B/E and tandem mass spectrometry, namely low collision energy spectra acquired on a BEQQ hybrid instrument. The methodology was applied to model compounds whose tandem mass spectrometry characteristics are well known, e.g. gramicidin S and angiotensin I. The results for the product ions of the [M + 2H]²⁺ species of the models were obtained which highlight the methodology required for high-mass materials.     

An attempt to distinguish between the components of a mixture of isomeric fragment ions

The [C₇H₁₀NO₃]⁺ ion in the normal mass spectrum of 2-ethoxycarbonyl-5-oxo-2-pyrrolidinepropanoic acid was shown to correspond to a mixture of two isomeric structures. By decreasing the ionizing electron energy, the one containing a CH₂CH₂COOH group becomes dominant. The proportion of the concentrations of the two isomeric ions was calculated by comparing their daughter ion spectra (obtained by linked scan at constant B/E) with the analogous spectra of a derivative partially labelled by deuterium at the carboxyl and amide groups.     

Analysis of tetrabenzyl N-giucosidic,N-mannosidic and N-galactosidic Isomers using fast atom bombardment/mass-analysed ion kinetic energy spectrometry

A series of new synthetic tetrabenzyl N-glucosidic, N-mannosidic and N-galactosidic isomers were investigated by fast atom bombardment (FAB)/mass-analysed ion kinetic energy (MIKE) spectrometry. The [M + H]⁺ ions were obtained with high abundance in the FAB spectra when using 3-nitrobenzyl alcohol as the matrix. The FAB/MIKE spectra provide characteristic daughter ions fragmented from selected molecular parent ions, allowing these isomers to be differentiated. In addition, an interesting rearrangement was found from the MIKE spectra, indicating that the benzyl (Bzl) group on the sugar ring is rearranged on to the N atom of the base (R) group to form [R + Bzl + H]⁺ and [R+ 2Bzl]⁺ ions.     

Mixed ligand complexes of β-diketonates: synthesis,characterization, and FAB mass spectral analysis

Complexes of the type MLL′ · nB (where M = Ni(II) and Cu(II); LH and L′H = 2,4-pentanedione (acacH), 1-phenyl-1,3-butanedione (bacH), and 1,3-diphenyl-1,3-propanedione (dbmH); n = 0 to 2 and B = water or pyridine) have been synthesized and characterized. IR spectra are consistent with uninegative bidentate ligands. Magnetic moments and electronic spectral studies reveal high-spin octahedral geometry for nickel(II) complexes and distorted octahedral stereochemistry for copper(II) complexes. Frozen chloroform solution ESR spectra of the copper(II) complexes display significant Jahn–Teller distortion and dimeric behavior of the complexes in solution. FAB mass spectra of the copper(II) complexes also exhibit peaks corresponding to dimers. Molecular, pseudo-molecular, dimeric pseudo-molecular, and fragment ion peaks in unit resolution mass spectra have been identified with the help of their isotope distribution pattern expected due to natural abundances of the ⁶³Cu and ⁶⁵Cu isotopes. All the FAB mass spectral peaks from the fragment ions containing copper have been interpreted on the basis of isotope distribution pattern.     

Stossaktivierungsspektren von 2-Alkoxybenzoesäuremethylestern

The CA spectra of the [M – Alkene]⁺·- and [M – Alkyl]⁺- ions from several 2-alkoxy-benzoic acid methyl esters and two 2H labelled 2-ethoxybenzoic acid methyl esters are discussed. The results show that the [M – alkene]⁺· ions decomposing after 10^?5 s by collisional activation have the structure of the ionised salicylic acid methyl ester. Moreover, it is demonstrated that the [M – methyl]⁺ ions from the 2-ethoxy esters exist in two different structures. No equilibration between these two structures is observed even after 10^?5s. Structures for several daughter ions generated by collisional activation are discussed using the CA spectra of the labelled compounds.     

Anomalies in the molecular ion region in the electron impact mass spectra of α- and β-hydroxyesters

In the electron impact mass spectra of some alkyl α- and β-hydroxyesters (introduced using the gas chromatography/mass spectrometry (GC/MS) technique), the absence of the molecular ion M^+· and the presence of the [M + 1]⁺ ion instead is observed. This phenomenon is especially characteristic of C₃? C₆ glycolates and diethyl malate, and is due to chemical auto-ionization—ion-molecule reactions in the high concentration gradient at the top of the GC peak. The existence of the [M ? 2]^+·, [M ?1]⁺ and M^+· ions in the mass spectra of other β- and α-hydroxyesters is discussed.     

Unusual behavior of pyrazolo[1,2-a]pyrazoles in fast atom bombardment (fab) and frit-fast atom bombardment (Frit-FAB) mass spectrometry. Influence of the matrix

The nature of the matrix used in Fast Atom Bombardment (FAB) mass spectrometry analyses of pyrazolo[1,2-a]pyrazoles was found to influence significantly their positive and negative ions mass spectra. Indeed the use of glycerol provided an abundant ion corresponding to the protonated molecule (M+H)⁺ whereas the meta-nitrobenzyl alcohol favored the formation of the radical ion M^+°. Such results which are in accordance with the oxidoreduction properties of the matrices studied were also established in Frit-FAB mass spectrometry analyses of pyrazolo[1,2-a]pyrazoles.     

A study of the electron impact induced retro-diels-alder process with selected 5,6,6a, 7,12,12a-hexahydrobenzo[a]anthracenes

The mass spectra of 5,6,6a,7,12,12a-hexahydrobenzo[a]anthracene and 2-methoxy, 3-methoxy-, 4-methoxy and 1-methyl-4-methoxy derivatives are reported. Among the fragment ions observed under electron impact ionization, [C₈H₈]^+· and [M? C₈H₈]^+· can be generated by a retro-Diels-Alder process. Studies of metastable ion reactions show these ions to be formed by fragmentation directly from the molecular ion. The CA spectra of the [C₈H₈]^+· ions from the subject compounds were compared with spectra from ions of the same composition from various sources. From these data, kinetic energy release measurements and stereochemical considerations, it is concluded that these ions are formed by a stepwise, rather than a concerted mechanism.