Determination of the double-bond position in hexadecenols by mass spectrometry without prior chemical modification

Fourteen isomers of chemically unmodified hexadecenol were analysed by two types of quadrupole mass spectrometer, coupled with a gas chromatograph, for the location of the double-bond position. A series of spectra were interpreted in terms of mass spectral patterns on a fuzzy classification, in which the intensity ratios of six diagnostic pairs of the predominant ions were preferred in devising similarity indices. The accuracy of the method in the location of double-bond position was confirmed by testing with other series of spectra.     

A method for the identification of the double-bond position of isomeric linear tetradecenols and related compounds based on mass spectra of dimethyl disulfide derivatives.

A simple method is presented for calculation of the double-bond position in linear tetradecenols based on mass spectral data of dimethyl disulfide derivatives. In this approach, the m/z ratios of the molecular ion and of one (or both) of the two most abundant fragment ions were utilized to calculate the double-bond position, without the requirement to identify both fragment ions resulting from carbon-carbon cleavage across what was originally the double bond. The approach was tested with mass spectra of dimethyl disulfide derivatives of 12 isomeric tetradecenols, and the double-bond position in each isomer was successfully identified by this method. The method was shown to work also for the corresponding acetates.     

Elucidation of the double-bond position of long-chain unsaturated fatty acids by multiple-stage linear ion-trap mass spectrometry with electrospray ionization

Linear ion-trap (LIT) MS2 mass spectrometric approach toward locating the position of double bond(s) of unsaturated long-chain fatty acids and toward discerning among isomeric unsaturated fatty acids as dilithiated adduct ([M-H+2Li]+) ions are described in this report. Upon resonance excitation in a LIT instrument, charge-remote fragmentation that involves beta-cleavage with gamma-H shift (McLafferty rearrangement) is the predominant fragmentation pathway seen for the [M-H+2Li]+ ions of monoenoic long-chain fatty acids. The fragmentation process results in a dilithiated product ion of terminally unsaturated fatty acid, which undergoes consecutive McLafferty rearrangement to eliminate a propylene residue, and gives rise to another dilithiated adduct ion of terminally unsaturated fatty acid. In addition to the above-cited fragmentation process, the [M-H+2Li]+ ions of homoconjugated dienoic long-chain fatty acids also undergo alpha-cleavage(s) with shift of the allylic hydrogen situated between the homoconjugated double bonds to the unsaturated site. These fragmentation pathways lead to two types of CC bond cleavages that are allylic (alpha-cleavage) or vinylic, respectively, to the proximal CC double bond, resulting in two distinct sets of ion series, in which each ion series is separated by a CH2CHCH (40 Da) residue. These latter fragmentations are the predominant processes seen for the polyunsaturated long-chain fatty acids. The spectrum feature dependent on the position of unsaturated double bond(s) affords unambiguous assignment of the position of double bond(s) of long-chain unsaturated fatty acids.     

Targeted analysis of protein citrullination using chemical modification and tandem mass spectrometry

Protein citrullination originates from enzymatic deimination of polypeptide‐bound arginine and is involved in various biological processes during health and disease. However, tools required for a detailed and targeted proteomic analysis of citrullinated proteins in situ, including their citrullination sites, are limited. A widely used technique for detection of citrullinated proteins relies on antibody staining after specific derivatization of citrulline residues by 2,3‐butanedione and antipyrine. We have recently reported on the details of this reaction. Here, we show that this chemical modification can be utilized to specifically detect and identify citrullinated peptides and their citrullination sites by liquid chromatography/tandem mass spectrometry (LC/MS/MS) analysis. Using model compounds, we demonstrate that in collision‐induced dissociation (CID) a specific, modification‐derived fragment ion appears as the dominating signal at m/z 201.1 in the MS/MS spectra. When applying electron transfer dissociation (ETD), however, the chemical modification of citrulline remained intact and extensive sequence coverage allowed identification of peptides and their citrullination sites. Therefore, LC/MS/MS analysis with alternating CID and ETD has been performed, using CID for specific, signature ion‐based detection of derivatized citrullinated peptides and ETD for sequence determination. The usefulness of this targeted analysis was demonstrated by identifying citrullination sites in myelin basic protein deiminated in vitro. Combining antibody‐based enrichment of chemically modified citrulline‐containing peptides with specific mass spectrometric detection will increase the potential of such a targeted analysis of protein citrullination in the future. Copyright © 2009 John Wiley & Sons, Ltd.     

Sensitive determination of inosine RNA modification in single cell by chemical derivatization coupled with mass spectrometry analysis

Inosine is a vital RNA modification across three kingdoms of life. It has been demonstrated that inosine plays important roles in modulation of the fate of RNAs. In the current study, we developed a highly sensitive method to determine inosine in a single cell by N-cyclohexyl-N’-β-(4-methylmorpholinium)ethylcarbodiimide p-toluenesulfonate(CMCT) derivatization in combination with mass spectrometry analysis. The results showed that the detection sensitivity of inosine was increased by 556-fold aft...     

基于质谱技术识别脂质双键位置的研究进展

脂质在能量贮存和信号传递方面发挥着巨大作用,同时还是生物膜的主要组成成分。不饱和脂质双键位置不同,生理学意义和生物学功能会有很大差异,因此脂质双键位置的识别至关重要。质谱具有灵敏快速、准确度高等优势,已成为脂质结构研究的重要方法。近年来,不同原理的电离技术与选择性衍生反应迅速发展起来,与质谱相结合已广泛应用于多种脂质双键位置的识别。本文主要对这些新型质谱技术进行总结,并展望了其未来发展趋势。     

Selective analysis of phosphopeptides within a protein mixture by chemical modification, reversible biotinylation and mass spectrometry

A new method combining chemical modification and affinity purification is described for the characterization of serine and threonine phosphopeptides in proteins. The method is based on the conversion of phosphoserine and phosphothreonine residues to S-(2-mercaptoethyl)cysteinyl or beta-methyl-S-(2-mercaptoethyl)cysteinyl residues by beta-elimination/1,2-ethanedithiol addition, followed by reversible biotinylation of the modified proteins. After trypsin digestion, the biotinylated peptides were affinity-isolated and enriched, and subsequently subjected to structural characterization by liquid chromatography/tandem mass spectrometry (LC/MS/MS). Database searching allowed for automated identification of modified residues that were originally phosphorylated. The applicability of the method is demonstrated by the identification of all known phosphorylation sites in a mixture of alpha-casein, beta-casein, and ovalbumin. The technique has potential for adaptations to proteome-wide analysis of protein phosphorylation.     

Probing Akt-inhibitor interaction by chemical cross-linking and mass spectrometry

The serine/threonine kinase Akt is a critical enzyme that regulates cell survival. As high Akt activity has been shown to contribute to the pathogenesis of various human malignancies, inhibition of Akt activation is a promising therapeutic strategy for cancers. We have previously demonstrated that changes in Akt interdomain arrangements from a closed to open conformation occur upon Akt-membrane interaction, which in turn allows Akt phosphorylation/activation. In the present study, we demonstrate a novel strategy to discern mechanisms for Akt inhibition based on Akt conformational changes using chemical cross-linking and ¹⁸O labeling mass spectrometry. By quantitative comparison of two interdomain cross-linked peptides, which represent the proximity of the domains involved, we found that the binding of Akt to an inhibitor (PI analog) caused the open interdomain conformation where the PH and regulatory domains moved away from the kinase domain, even before interacting with membranes, subsequently preventing translocation of Akt to the plasma membrane. In contrast, the interdomain conformation remained unchanged after incubating with another type of inhibitor (peptide TCL1). Subsequent interaction with unilamellar vesicles suggested that TCL1 impaired particularly the opening of the PH domain for exposing T308 for phosphorylation at the plasma membrane. This novel approach based on the conformation-based molecular interaction mechanism should be potentially useful for drug discovery efforts for specific Akt inhibitors or anti-tumor agents.     

Stereochemical effects in mass spectrometry. 3—Detection of chirality by chemical ionization mass spectrometry

It was found that the chemical ionization mass spectra of the enantiomers of some α-amino acids and α-hydroxy acids could be definitely distinguished when a chiral compound, l-amyl alcohol, was used as a component of the reagent gases. The relative abundances of some characteristic ions produced through ion-molecule reactions in the gas phase were much higher in the D isomers than in the L isomers. The results were highly reproducible. This approach proved to be a convenient way for the detection of the chirality of these compounds by chemical ionization mass spectrometry.     

Identification of position isomers by energy‐resolved mass spectrometry

This study reports an energy‐resolved mass spectrometric (ERMS) strategy for the characterization of position isomers derived from the reaction of hydroxyl radicals (^●OH) with diphenhydramine (DPH) that are usually hard to differentiate by other methods. The isomer analogues formed by ^●OH attack on the side chain of DPH are identified with the help of a specific fragment ion peak (m/z 88) in the collision‐induced dissociation (CID) spectrum of the protonated molecule. In the negative ion mode, the breakdown curves of the deprotonated molecules show an order of stability (supported by density functional theory (DFT) calculations) ortho > meta > para of the positional isomers formed by the hydroxylation of the aromatic ring. The gas phase stability of the deprotonated molecules [M ? H]^? towards the benzylic cleavage depends mainly on the formation of intramolecular hydrogen bonds and of the mesomeric effect of the phenol hydroxyl. The [M ? H]^? molecules of ortho and meta isomers result a peak at m/z 183 with notably different intensities because of the presence/absence of an intramolecular hydrogen bonding between the OH group and C9 protons. The ERMS approach discussed in this report might be an effective replacement for the conventional methods that requires very costly and time‐consuming separation/purification methods along with the use of multi‐spectroscopic methods. Copyright © 2015 John Wiley & Sons, Ltd.     

Reduction of trinitroaromatic compounds in water by chemical ionization mass spectrometry

A reduction process was found to occur in the ion source when observing the chemical ionization mass spectra of a series of trinitroaromatic compounds, using water as reagent. The [MH–30]⁺ ions in the CI mass spectra were due mainly to the reduction of the compounds to their corresponding amines. This was proved by using D₂O as reagent: the [MH–30]⁺ ions were shifted to [MD–28]⁺ ions. The trinitroaromatic compounds investigated included 1,3,5-trinitrobenzene, 2,4,6-trinitrotoluene, 2,4,6-trinitro-m-cresol, 2,4,6-trinitroaniline (picramide) and 2,4,6-trinitrophenol (picric acid).     

Surface desorption atmospheric pressure chemical ionization mass spectrometry for direct ambient sample analysis without toxic chemical contamination

Ambient mass spectrometry, pioneered with desorption electrospray ionization (DESI) technique, is of increasing interest in recent years. In this study, a corona discharge ionization source is adapted for direct surface desorption chemical ionization of compounds on various surfaces at atmospheric pressure. Ambient air, with about 60% relative humidity, is used as a reagent to generate primary ions such as H(3)O(+), which is then directed to impact the sample surface for desorption and ionization. Under experimental conditions, protonated or deprotonated molecules of analytes present on various samples are observed using positive or negative corona discharge. Fast detection of trace amounts of analytes present in pharmaceutical preparations, viz foods, skins and clothes has been demonstrated without any sample pretreatment. Taking the advantage of the gasless setup, powder samples such as amino acids and mixtures of pharmaceutical preparations are rapidly analyzed. Impurities such as sudan dyes in tomato sauce are detected semiquantitatively. Molecular markers (e.g. putrescine) for meat spoilage are successfully identified from an artificially spoiled fish sample. Chemical warfare agent stimulants, explosives and herbicides are directly detected from the skin samples and clothing exposed to these compounds. This provides a detection limit of sub-pg (S/N > or = 3) range in MS2. Metabolites and consumed chemicals such as glucose are detected successfully from human skins. Conclusively, surface desorption atmospheric pressure chemical ionization (DAPCI) mass spectrometry, without toxic chemical contamination, detects various compounds in complex matrices, showing promising applications for analyses of human related samples.     

Analysis of polymers by pyrolysis/chemical ionization mass spectrometry

Two addition-type polymers, polystyrene and polypropylene, and two condensation-type polymers, poly(ethylene terephthalate) (Mylar) and poly(hexamethylene adipamide) (nylon-6,6), were pyrolyzed directly in the ion source of a mass spectrometer by chemical ionization (CI) to reduce fragmentation. The spectra are relatively easy to interpret because most ion peaks occur at a mass corresponding to the ion formula M±H or M + 3H, where M is the formula of a fragment of the original polymer chain. Oligomer peaks were observed for the addition-type polymers. The intensities of the protonated dimer and monomer were measured as a function of time for styrene (S) and propylene (P). It was found that essentially all the HS⁺2 was produced by the reaction of HS⁺ with S, but at least part of the HP⁺2 was formed by proton transfer to P₂. The absence of the analogous reaction in styrene is presumably a result of the reduced volatility of S₂.     

Characterization of dehydroascorbate‐mediated modification of glutaredoxin by mass spectrometry

Ascorbate is as a potent antioxidant in vivo protecting the organism against oxidative stress. In this process, ascorbate is oxidized in two steps to dehydroascorbate (DHA), which if not efficiently reduced back to ascorbate decomposes irreversibly to a complex mixture of products. We demonstrate that a component of this mixture specifically reacts with the thiol group of cysteine residues at physiological pH to give a protein adduct involving the addition of a 5‐carbon fragment of DHA (+112 Da). Incubations of glutaredoxin‐1 expressed in Escherichia coli and dehydroascorbate revealed abundant adducts of +112, +224 and +336 Da due to the addition of one, two and three conjugation products of DHA, respectively. ESI–MS of carbamidomethylated glutaredoxin‐1 before incubation with DHA, deuterium exchange together with tandem mass spectrometry analysis and LC–ESIMS/MS of modified peptides confirmed structure and sites of modification in the protein. Modification of protein thiols by a DHA‐derived product can be involved in oxidative stress‐mediated cellular toxicity. Copyright © 2015 John Wiley & Sons, Ltd.     

Methane chemical ionization mass spectrometry of flavonoids

The chemical ionization mass spectra of a representative selection of flavones, flavonols, flavanones, and flavanols have been examined, using methane as the reagent gas. The flavones and flavonols showed no significant fragmentation under the conditions employed, but the flavanones and flavanols showed characteristic fragmentation which could be of use in structural elucidation of these compounds.     

Negative chemical ionization mass spectrometry of explosives

The negative chemical ionization mass spectra of nitrobenzene, ethylene glycol dinitrate and nitroglycerine have been obtained using various reagent ions. For nitrobenzene, [OH]^? gives the [M ? H]^?, together with [M]^?˙ ions formed by electron capture, but other reagent ions gave relatively low intensity adduct peaks. Ethylene glycol dinitrate and nitroglycerine gave abundant [M + X]^? ions (X = NO₂, NO₃, Cl, Br, I), together with ions arising from the thermal decomposition of the samples in the heated inlet system. The rate of anion attachment to these compounds is much greater than that to related compounds having only one functional group, and it is suggested that this is due to the participation of the adjacent groups in the bonding between the substrate and anion.     

Hydrogen chemical ionization mass spectrometry of metalloporphyrins

The hydrogen chemical ionization (H₂ CI) mass spectra of a range of metal(II) (Ni, Cu, Co, Pt), metal (III) (Al, Mn, Ga, Fe (bearing a single axial ligand)) and metal(IV) (Si, Ge, Sn (bearing two axial ligands) and V (as V?O²⁺)) porphyrins have been determined, The spectra are highly dependent on the coordinated metal, rather than the axial ligand(s) (where present). Ni(II), Cu(II), Mn(II or III), Ga(III), Ge(IV), Fe(III) and Sn(IV) porphyrins fragment via hydrogenation and demetallation, followed by cleavage of the resulting porphyrinogens at the meso(bridge) positions to give mono- and di-pyrrolic fragments. Tripyrrolic fragments are also observed in the case of Ni(II), Cu(II) and Sn(IV). Fragmentations of this type are similar to those observed for free-base porphyrins. In the case of Pt(II), Co(II), Al(III), Si(IV) and V(IV) (as vanadyl), the dipyrrolic fragment ions are either very weak or completely absent; hence their H₂CI spectra contain limited structural information. This variable CI behaviour may be related to the relative stabilities of the metalloporphyrins together with the multiple stable valency states exhibited by several metals.