NH tautomerism in the natural chlorin derivatives

The NH tautomerism of five Mg-free chlorophyll a and b derivatives 2-6 was studied utilizing NMR spectroscopy and molecular modeling. The results from the dynamic NMR measurements of the chlorins revealed that substituent effects contribute crucially to the free energy of activation (DeltaG(double dagger)) in the NH tautomeric processes. An intermediate tautomer for the total tautomeric NH exchange in a chlorin was observed for the first time, when the (1)H NMR spectra of chlorin e(6) TME (3) and rhodin g(7) TME (4) (TME = trimethyl ester) were measured at lower temperatures. The lower energy barriers (DeltaG(1)(double dagger)) obtained for the formation of the intermediate tautomers of 3 and 4, assigned to the N(22)-H, N(24)-H trans-tautomer, were 10.8 and 10.6 kcal/mol, respectively. The energy barrier (DeltaG(2)(double dagger) value) for the total tautomeric NH exchange in the five chlorins was found to vary from 13.6 kcal/mol to values higher than 18 kcal/mol. The lowest DeltaG(2)(double dagger) value (13.6 kcal/mol) was obtained for rhodochlorin XV dimethyl ester (2), which was the only chlorophyll derivative lacking the C(15) substituent. In the case of chlorins 4 and 5, the steric crowding around the methoxycarbonylmethyl group at C(15) raised the DeltaG(2)(double dagger) activation free-energy to 17.1 kcal/mol. However, the highest energy barrier with DeltaG(2)(double dagger) > 18 kcal/mol was observed for the NH exchange of pyropheophorbide a methyl ester (6), possessing the macrocycle rigidifying isocyclic ring E. Our results demonstrate that the steric strain, arising either from the steric crowding around the bulky substituent at C(15) or the macrocycle rigidifying isocyclic ring E, slows down the NH tautomeric process. We suggest that deformations in the chlorin skeleton are closely connected to the NH tautomeric exchange and that the exchange occurs by a stepwise proton-transfer mechanism via a hydrogen bridge.     

Halogenation of cubane under phase-transfer conditions: single and double C-H-bond substitution with conservation of the cage structure.

The first highly selective C-H chlorination, bromination, and iodination of cubane (1) utilizing polyhalomethanes as halogen sources under phase-transfer (PT) conditions is described. Isomeric dihalocubanes with all possible combinations of chlorine, bromine, and iodine in ortho, meta, and para positions were also prepared by this method; m-dihalo products form preferentially. Ab initio and density functional theory (DFT) computations were used to rationalize the pronounced differences in the reactions of 1 with halogen (Hal(*)) vs carbon-centered trihalomethyl (Hal(3)C(*)) radicals (Hal = Cl, Br). For Hal(3)C radicals the C-H abstraction pathway is less unfavorable (DeltaG(double dagger)(298) = 21.6 kcal/mol for Cl(3)C(*) and 19.4 kcal/mol for Br(3)C(*) at B3LYP/6-311+G//B3LYP/6-31G) than the fragmentation of the cubane skeleton via S(H)2-attack on one of the carbon atoms of 1 (DeltaG(double dagger)(298) = 33.8 and 35.1 kcal/mol, respectively). In stark contrast, the reaction of 1 with halogen atoms preferentially follows the fragmentation pathway (DeltaG(double dagger)(298) = 2.1 and 7.5 kcal/mol) and C-H abstraction is more unfavorable (DeltaG(double dagger)(298) = 4.6 and 12.0 kcal/mol). Our computational results nicely agree with the behavior of 1 under PT halogenation conditions (where Hal(3)C(*) is involved in the activation step) and under free-radical photohalogenation with Hal(2) (Della, E. W., et al. J. Am. Chem. Soc. 1992, 114, 10730). The incorporation of a second halogen atom preferentially in the meta position of halocubanes demonstrates the control of the regioselectivity by molecular orbital symmetry.     

Conformational analysis of alkylated biuret and triuret: evidence for helicity and helical inversion in oligoisocyanates

The conformations of several oligoisocyanates have been investigated by NMR in order to study the onset and dynamics of helicity in polyisocyanates. Pentaethylbiuret and hexaethyltriuret were found to adopt turns and helices in solution. For hexaethyltriuret, symmetric and asymmetric helices are present. Not only is an interconversion of these forms observed (DeltaG(SA)(double dagger) = 9.3 +/- 0.4 kcal/mol) but also a reversal of helicity (DeltaG(PM)(double dagger) = 9.0 +/- 0.4 kcal/mol). The coalescence pattern for the latter process provides direct evidence for a concerted, conrotatory helical inversion.     

Developing a new class of axial chiral phosphorus ligands: preparation and characterization of enantiopure atropisomeric phosphinines

Both enantiomers of the first atropisomeric phosphinine (1) have been isolated by using analytical HPLC on a chiral stationary phase. The enrichment of one enantiomer and a subsequent investigation into its racemization kinetics revealed a barrier for internal rotation of DeltaG(298)(double dagger) = (109.5+/-0.5) kJ mol(-1), which is in excellent agreement with the theoretically predicted value of DeltaG(298)(double dagger) =116 kJ mol(-1). Further analysis with UV and circular dichroism spectroscopies and density functional theory calculations led to the determination and assignment of the absolute configurations of both enantiomers. These results are the basis for future investigations into this new class of axially chiral phosphinine-based ligands and their possible applications in asymmetric homogeneous catalysis.     

Does Silica Surface Catalyse Peptide Bond Formation? New Insights from First‐Principles Calculations

The role that silica surface could have played in prebiotic chemistry as a catalyst for peptide bond formation has been addressed at the B3LYP/6-31+G(d,p) level for a model reaction involving glycine and ammonia on a silica cluster mimicking an isolated terminal silanol group present at the silica surface. Hydrogen-bond complexation between glycine and the silanol is followed by the formation of the mixed surface anhydride Si(surf)-O-C(=O)-R, which has been suggested in the literature to activate the C=O bond towards nucleophilic attack by a second glycine molecule, here simulated by the simpler NH3 molecule. However, B3LYP/6-31+G(d,p) calculations show that formation of the surface mixed anhydride Si(surf)-O-C(=O)-R is disfavoured (delta(r)G298 approximately 6 kcal mol(-1)), and that the surface bond only moderately lowers the free-energy barrier of the nucleophilic attack responsible for peptide bond formation (deltaG298(double dagger) approximately 48 kcal mol(-1)) in comparison with the uncatalysed reaction (deltaG298(double dagger) approximately 52 kcal mol(-1)). A further decrease of the free-energy barrier of peptide bond formation (deltaG298(double dagger) approximately 41 kcal mol(-1)) is achieved by a single water molecule close to the reaction centre acting as a proton-transfer helper in the activated complex. A possible role of strained silica surface defects on the formation of the surface mixed anhydride Si(surf)-O-C(=O)-R has also been addressed.     

The mechanism of water oxidation catalysis promoted by [tpyRu(IV)=O]2L3+: a computational study

The resting state of the recently reported water oxidation catalyst [tpyRu(II)-OH(2)](2)L(3+) (tpy = terpyridine; L = bipyridylpyrazolylic anion) ([2,2](3+)) must be activated by a series of proton-coupled oxidations in which four protons and four electrons are removed overall to afford the catalytically competent species [tpyRu(IV)O](2)L(3+) ([4,4](3+)). We have examined all of the plausible redox intermediates utilizing density functional theory coupled to a continuum solvation model. Our calculations reproduce well the first three redox potentials under pH = 1 conditions, and a reasonable correlation between theory and experiment is found for the fourth irreversible redox process that accompanies O(2) generation. The computed oxidation potentials to access [5,4](4+) and [5,5](5+), 1.875 and 2.032 V vs NHE, respectively, exclude the otherwise plausible possibilities of the catalytically active species having a higher oxidation state. [4,4](3+) has an antiferromagnetically coupled ground state in which one ruthenium has two unpaired electrons antiparallel to those of the other ruthenium. As we found in our previous work, two radicaloid terminal oxygen moieties with different spin orientations that are induced by spin polarization from the electron-deficient Ru(IV) centers are found. Two mechanistic scenarios are relevant and interesting for the key O-O bond formation event: intramolecular oxo-oxo coupling and coupling between one terminal oxo and the oxygen atom of the incoming water substrate. The intramolecular oxo-oxo coupling is facile, with a low barrier of 13.9 kcal mol(-1), yielding a peroxo intermediate. The necessary subsequent addition of water in an associative substitution mechanism to cleave one of the Ru-peroxo bonds, however, is found to be impractical at room temperature, with a barrier of DeltaG(double dagger) = 30.9 kcal mol(-1). Thus, while plausible, the intramolecular oxo-oxo coupling is unproductive for generating molecular dioxygen. The intermolecular O-O coupling is associated with a high barrier (DeltaG(double dagger) = 40.2 kcal mol(-1)) and requires the assistance of an additional proton, which lowers the barrier dramatically to 24.5 kcal mol(-1).     

Reactivity of 13,13-dibromo-2,4,9,11-tetraoxadispiro[5.0.5.1]tridecane toward organolithiums: remarkable resistance to the DMS rearrangement

Reactions of dibromocyclopropane 2a, containing two spiro-fused 1,3-dioxane rings, with MeLi gave only the methylation products 8 and 9 even at elevated temperatures. In contrast, the cyclohexane analogue 2b treated with MeLi underwent a smooth rearrangement to bicyclo[1.1.0]butane 11b at -78, -10, or +35 degrees C. Treatment of 2a with PhLi gave the alpha-Ph anion 13 as the only product, which underwent smooth methylation with MeI to give 14. Under the same conditions, 2b with PhLi gave bicyclo[1.1.0]butane 11b accompanied by bromophenyl derivative 8b. Treatment of either dibromide with t-BuLi gave a mixture of products including debrominated cyclopropanes 12. Experimental results were augmented with DFT calculations for salts 23 and MP2//DFT-level calculations for carbenes 22. They demonstrated a higher stability of the dioxane alpha-bromo anion with respect to alpha-elimination by 4.8 kcal/mol and also a lower tendency of the carbene 22a to undergo rearrangement by 4.0 kcal/mol than the cyclohexane analogues. These differences have been attributed to the inductive effect of the four oxygen atoms, which results in lower LUMO energy, the higher positive charge at the carbenic center, and the overall more electrophilic character of carbene 22a as compared to the cyclohexane derivative 22b. The rearrangement of carbenes 22 to the corresponding allenes 1, the thermodynamic products, requires a higher activation energy DeltaG(double dagger)(298) by 4.2 kcal/mol for dioxane and 6.4 kcal/mol for cyclohexane derivatives than for the formation of the bicyclo[1.1.0]butanes 11. The DeltaG(double dagger)(298) for intramolecular insertions to the CH bond is low and calculated as 6.0 kcal/mol for dioxane 22a and 2.0 kcal/mol for the formation of cyclohexane 22b.     

Gas-phase thermochemical properties of pyrimidine nucleobases

The gas-phase acidity and proton affinity of thymine, cytosine, and 1-methyl cytosine have been examined using both theoretical (B3LYP/6-31+G*) and experimental (bracketing, Cooks kinetic) methods. This paper represents a comprehensive examination of multiple acidic sites of thymine and cytosine and of the acidity and proton affinity of thymine, cytosine, and 1-methyl cytosine. Thymine exists as the most stable "canonical" tautomer in the gas phase, with a DeltaH(acid) of 335 +/- 4 kcal mol(-1) (DeltaG(acid) = 328 +/- 4 kcal mol(-1)) for the more acidic N1-H. The acidity of the less acidic N3-H site has not, heretofore, been measured; we bracket a DeltaH(acid) value of 346 +/- 3 kcal mol(-1) (DeltaG(acid) = 339 +/- 3 kcal mol(-1)). The proton affinity (PA = DeltaH) of thymine is measured to be 211 +/- 3 kcal mol(-1) (GB = DeltaG = 203 +/- 3 kcal mol(-1)). Cytosine is known to have several stable tautomers in the gas phase in contrast to in solution, where the canonical tautomer predominates. Using bracketing methods in an FTMS, we measure a DeltaH(acid) for the more acidic site of 342 +/- 3 kcal mol(-1) (DeltaG(acid) = 335 +/- 3 kcal mol(-1)). The DeltaH(acid) of the less acidic site, previously unknown, is 352 +/- 4 kcal mol(-1) (345 +/- 4 kcal mol(-1)). The proton affinity is 228 +/- 3 kcal mol(-1) (GB = 220 +/- 3 kcal mol(-1)). Comparison of these values to calculations indicates that we most likely have a mixture of the canonical tautomer and two enol tautomers and possibly an imine tautomer under our conditions in the gas phase. We also measure the acidity and proton affinity of cytosine using the extended Cooks kinetic method. We form the proton-bound dimers via electrospray of an aqueous solution, which favors cytosine in the canonical form. The acidity of cytosine using this method is DeltaH(acid) = 343 +/- 3 kcal mol(-1), PA = 227 +/- 3 kcal mol(-1). We also examined 1-methyl cytosine, which has fewer accessible tautomers than cytosine. We measure a DeltaH(acid) of 349 +/- 3 kcal mol(-1) (DeltaG(acid) = 342 +/- 3 kcal mol(-1)) and a PA of 230 +/- 3 kcal mol(-1) (GB = 223 +/- 3 kcal mol(-1)). Our ultimate goal is to understand the intrinsic reactivity of nucleobases; gas-phase acidic and basic properties are of interest for chemical reasons and also possibly for biological purposes because biological media can be quite nonpolar.     

Retro Diels-Alder reactions of 5,6-disubstituted-7-oxabicyclo

Several 5,6-disubstituted-7-oxabicyclo[2.2.1]hept-2-enes (1-4) were synthesized on > or = 0.1 mol scale. The heat-induced retro Diels-Alder (rDA) decomposition of these derivatives was studied by thermal analysis, and the kinetics of the rDA were measured for 4. First-order rate constants (k = 1.91-14.2 x 10(-5) s(-1)), measured at four temperatures between 124 and 150 degrees C, were used to calculate Arrhenius activation parameters Ea (34.5 +/- 0.5 kcal/mol) and ln A (1.77 +/- 0.03 x 10(4)). The observed activation energy was significantly larger (by 9.5 kcal/mol) than that previously measured for the maleic anhydride adduct 1, and this was attributed to the difference in LUMO energies for the two dienophiles. Modeling of the activation parameters found for 4 with density functional theory (DFT) calculations for similar compounds 5 and 6 gave close quantitative correlations for deltaH double dagger, deltaG double dagger, deltaS double dagger. The rDA reactions studied were found to be entropy-driven.     

Static and dynamic stereochemistry of the conformational atropisomers of tetra(o-tolyl)benzene

[graph: see text] Whereas only one atropisomer of 1,2,4,5-tetra(o-tolyl)benzene was observed by X-ray diffraction in the solid, five conformational atropisomers were detected by low-temperature NMR in solution. Their structures were assigned by a combination of NOE experiments, solvent effect, and ab initio calculations. Variable temperature dynamic NMR and bidimensional EXSY experiments allowed the barrier for the interconversion of these atropisomers to be determined (deltaG(double dagger) = 15.3 kcal mol(-1)).     

Stereomutations of two-bladed propeller derivatives: ortho-substituted diaryl ethylene and diaryl ketone

Stereochemical analysis, supported by ab initio computations, predicts the existence of three possible stable helical conformers for o,o'-diisopropyl-1,1'-diphenylethylene (1) and o,o'-diisopropylbenzophenone (2). At low temperature the NMR spectra of 1 showed distinct sets of signals for these conformers, thus allowing the measurement of the three barriers involved in the related stereomutation processes to be obtained (DeltaG=6.45, 4.65, and < or =4.0 kcal mol(-1)). The NMR spectra also indicate that the asymmetric conformer (C1 point group) is the most stable one in solution, as anticipated by calculations. X-ray diffraction confirmed that this structure is that adopted in the crystalline state. On the other hand, o,o'-diisopropylbenzophenone (2) is predicted by calculations to exist essentially as a C2-type conformer, a result that was confirmed by the low-temperature NMR spectra. The interconversion barrier for the enantiomeric forms of this conformer was also measured (DeltaG=6.3(5) kcal mol(-1)).     

Interplay of Twisting and Folding in Overcrowded Heteromerous Bistricyclic Aromatic Enes

Fluorenylidenexanthenes 5-7 were synthesized by 2-fold extrusion diazo-thione couplings. 7 exhibited yellow crystals and purple (560 nm) solutions. (1)H NMR of 5 and 7 indicated subtle equilibria twisted (t) right harpoon over left harpoon anti-folded (a) major/minor conformations. (13)C DNMR of 6 gave DeltaG(c)(double dagger)(enantiomerization/inversion) = 26.5 kJ/mol and DeltaG(c)(double dagger)(E,Z-topomerization) = 82.0 kJ/mol. PM3 calculations of 5 revealed minima a, t, ts (twisted/syn-folded), DeltaDeltaH(f) degrees = 0.0, 14.1, 15.6 kJ/mol, and transition states [t-ts], [a-ts], [t( perpendicular)], [a-a], DeltaDeltaH(f) degrees = 16.3, 17.4, 82.2, 99.3 kJ/mol.     

Conformational analysis of indole alkaloids corynantheine and dihydrocorynantheine by dynamic 1H NMR spectroscopy and computational methods: steric effects of ethyl vs vinyl group

1H NMR (400 MHz) spectra of the indole alkaloid dihydrocorynantheine recorded at room temperature show the presence of two conformers near coalescence. Low temperature 1H NMR allowed characterization of the conformational equilibrium, which involves rotation of the 3-methoxypropenoate side chain. Line-shape analysis yielded enthalpy of activation DeltaH(double dagger) = 71 +/- 6 kJ/mol, and entropy of activation DeltaS(double dagger) = 33 +/- 6 J/mol.K. The major and minor conformation contains the methyl ether group above and below the plane of the ring, respectively, as determined by low-temperature NOESY spectra, with free energy difference DeltaG degrees = 1.1 kJ/mol at -40 degrees C. In contrast to dihydrocorynantheine, the corresponding rotamers of corynantheine are in the fast exchange limit at room temperature. The activation parameters determined for corynantheine were DeltaH(double dagger) = 60 +/- 6 kJ/mol and DeltaS(double dagger) = 24 +/- 6 J/mol.K, with DeltaG degrees = 1.3 kJ/mol at -45 degrees C. The difference in the exchange rates of the rotamers of corynantheine and dihydrocorynantheine (respectively, 350 s(-1) and 9 s(-1) at 0 degrees C) reflects the difference in the steric bulk of the vinyl and the ethyl group. The conformational equilibria involving the side chain rotation as well as inversion of the bridgehead nitrogen in corynantheine and dihydrocorynantheine was studied by force-field (Amber and MMFF) and ab initio (density-functional theory at the B3LYP/6-31G level) computational methods, the results of which were in good agreement with the 1H NMR data. However, the calculations identified the rotamers as essentially isoenergetic, the experimental energy differences being to small to be reproduced exactly by the theory. Comparison of density-functional and force-field calculations with experimental results identified Amber as giving the most accurate results in the present case.     

Oxidations of NADH analogues by cis-[RuIV(bpy)2(py)(O)]2+ occur by hydrogen-atom transfer rather than by hydride transfer

Oxidations of the NADH analogues 10-methyl-9,10-dihydroacridine (AcrH2) and N-benzyl 1,4-dihydronicotinamide (BNAH) by cis-[RuIV(bpy)2(py)(O)]2+ (RuIVO2+) have been studied to probe the preferences for hydrogen-atom transfer vs hydride transfer mechanisms for the C-H bond oxidation. 1H NMR spectra of completed reactions of AcrH2 and RuIVO2+, after more than approximately 20 min, reveal the predominant products to be 10-methylacridone (AcrO) and cis-[RuII(bpy)2(py)(MeCN)]2+. Over the first few seconds of the reaction, however, as monitored by stopped-flow optical spectroscopy, the 10-methylacridinium cation (AcrH+) is observed. AcrH+ is the product of net hydride removal from AcrH2, but hydride transfer cannot be the dominant pathway because AcrH+ is formed in only 40-50% yield and its subsequent oxidation to AcrO is relatively slow. Kinetic studies show that the reaction is first order in both RuIVO2+ and AcrH2, with k = (5.7 +/- 0.3) x 10(3) M(-1) s(-1) at 25 degrees C, DeltaH(double dagger) = 5.3 +/- 0.3 kcal mol(-1) and DeltaS(double dagger) = -23 +/- 1 cal mol(-1) K(-1). A large kinetic isotope effect is observed, kAcrH2/kAcrD2 = 12 +/- 1. The kinetics of this reaction are significantly affected by O2. The rate constants for the oxidations of AcrH2 and BNAH correlate well with those for a series of hydrocarbon C-H bond oxidations by RuIVO2+. The data indicate a mechanism of initial hydrogen-atom abstraction. The acridinyl radical, AcrH*, then rapidly reacts by electron transfer (to give AcrH+) or by C-O bond formation (leading to AcrO). Thermochemical analyses show that H* and H- transfer from AcrH2 to RuIVO2+ are comparably exoergic: DeltaG degrees = -10 +/- 2 kcal mol(-1) (H*) and -6 +/- 5 kcal mol(-1) (H-). That a hydrogen-atom transfer is preferred kinetically suggests that this mechanism has an equal or lower intrinsic barrier than a hydride transfer pathway.     

The acidity and proton affinity of the damaged base 1,N6-ethenoadenine in the gas phase versus in solution: intrinsic reactivity and biological implications

1,N(6)-ethenoadenine (epsilonA) is a highly mutagenic lesion that is excised from human DNA by the enzyme alkyladenine DNA glycosylase (AAG). In an effort to understand the intrinsic properties of 1,N(6)-ethenoadenine, we examined its gas phase acidity and proton affinity using quantum mechanical calculations and mass spectrometric experimental methods. We measure two acidities for epsilonA: a more acidic site (DeltaH(acid) = 332 kcal mol(-1); DeltaG(acid) = 325 kcal mol(-1)) and a less acidic site (DeltaH(acid) = 367 kcal mol(-1); DeltaG(acid) = 360 kcal mol(-1)). We also find that the proton affinity of the most basic site of 1,N(6)-ethenoadenine is 232-233 kcal mol(-1) (GB = 224 kcal mol(-1)). These measurements, when compared to calculations, establish that, under our experimental conditions, we have only the canonical tautomer of 1,N(6)-ethenoadenine present. We also compare the gas phase acidic properties of epsilonA with that of the normal bases adenine and guanine and find that epsilonA is the most acidic. This supports the theory that AAG and other related enzymes may cleave damaged bases as anions. Furthermore, comparison of the gas phase and aqueous acidities indicates that the nonpolar environment of the enzyme enhances the acidity differences of epsilonA versus adenine and guanine.     

Cooperative and competitive effects of substituents at C1 and C4 on the barriers to ring inversion of 5,5-difluorobicyclo[2.1.0]pentanes

To identify the reasons for the very low barrier that has been measured for ring inversion of 1,4,5,5-tetrafluorobicyclo[2.1.0]pentane (deltaG(double dagger) = 6.8 +/- 0.2 kcal/mol), CASSCF and CASPT2 calculations have been performed on ring inversion in this and other bicyclo[2.1.0]pentanes. The results of the calculations show that a cooperative interaction between the geminal fluorines at C2 and the fluorines at C1 and C3 in the singlet cyclopentane-1,3-diyl transition structure (TS) contributes 3.7 kcal/mol to lowering the barrier to ring inversion in the tetrafluoro compound. In contrast, a competitive substituent effect in the TS for ring inversion of 1,4-dicyano-5,5-difluorobicyclo[2.1.0]pentane is predicted to raise the barrier height by 6.1 kcal/mol. The origin of these cooperative and competitive substituent effects is discussed.     

The solution structures and dynamics and the solid-state structures of substituted cyclopentadienyltitanium(IV) trifluorides

Organotitanium fluorides (C5Me4R)TiF3 (R = H, Me, Et) sublimate with formation of crystalline dimers. From solution, we obtained crystals of dimers and tetramers. The tetramer [{(C5Me5)TiF3}4] irreversibly dissociates in the solid state to dimers (DeltaH = 8.33 kcal mol(-1)). The variable-temperature (1)H and (19)F NMR spectroscopy measurements of the toluene-d(8) solution of [{(C5Me5)TiF3}2] revealed at 202 K one monomeric, two dimeric (with C2h and Cs symmetry), two tetrameric (with D2 and C2v symmetry), and two trimeric (both C2 symmetry) molecules. With the increase in temperature and dilution of the solution, the composition of the solution shifts to the smaller molecules. The thermodynamic and activation parameters for the reversible dissociation of dimers to monomers in the solution are DeltaH = 9.2 kcal mol(-1), DeltaS = 24.2 cal mol(-1) K(-1), DeltaH(double dagger) = 12.2 kcal mol(-1), DeltaS(double dagger) = 9.7 cal mol(-1) K(-1). The dissociation path with a weakly double-bridged transition-state dimer was proposed. The thermodynamic parameters for the reversible dissociation of the C2v tetramer to the dimers in solution are DeltaH = 7.9 kcal mol(-1) and DeltaS = 26.8 cal mol(-1) K(-1). From both tetramers, the D2 molecule is 0.34(5) kcal mol(-1) lower in enthalpy and 6.5(5) cal mol(-1) K(-1) lower in entropy than the C2v molecule. The structures of both trimers were proposed. The low-temperature 19F NMR spectra of the CDCl3 solution of [{(C5Me5)TiF3}2] are consistent with equilibria of a monomer, two dimers (with C2h and Cs symmetry), and a trimer. The vapor pressure osmometric molecular mass determination of CDCl3 solution of [{(C5Me5)TiF3}2] at 302 K is consistent with the equilibrium of the dimer and the monomer.     

Pre-catalyst resting states: a kinetic, thermodynamic and quantum mechanical analyses of [PdCl2(2-oxazoline)2] complexes

The treatment of cold ( approximately 3 degrees C) methanolic solutions of Li(2)PdCl(4) with two equivalents of 2-phenyl-2-oxazoline (Phox) results in the isolation of [PdCl(2)(Phox)(2)] (3). This complex undergoes remarkably slow isomerisation (CHCl(3)-d) at room temperature to a corresponding thermodynamic form. In addition to a theoretical treatment (DFT), the isomerisation behaviour has been analysed both kinetically and thermodynamically. These investigations lead to the conclusion that the initially formed (i.e. kinetic) isomer of 3 is the cis-form which undergoes conversion to the corresponding thermodynamic trans-form via a dissociative (D) mechanism involving loss of a Phox ligand. The activation parameters DeltaS(double dagger) and DeltaH(double dagger) are found to be +304 (+/-3) J K(-1) mol(-1) and +176 (+/-1) kJ mol(-1), respectively and indicate a high barrier to Pd-N bond cleavage under these conditions. The thermodynamic parameters show the expected endothermic nature of this process (+140 +/- 17 kJ mol(-1)) and a slight positive overall entropy (DeltaS degrees = +17 +/- 2 J K(-1) mol(-1)); this latter parameter is presumably due to the formation of the lower dipole moment trans-product when compared to the cis-isomer. Calculated (DFT) values of DeltaG(double dagger) and DeltaH(double dagger) are in excellent agreement to those found experimentally. Further theoretical investigation suggests that two 14-electron three-coordinate T-shaped transition states (i.e., [PdCl(2)(Phox)](double dagger)) are involved; the form pre-disposed to yield the thermodynamic trans-product following re-attachment of the released oxazoline is found to be energetically favoured. The analogous alkyloxazoline system [PdCl(2)(Meox)(2)] (4: Meox = 2-methyl-2-oxazoline) has likewise been investigated. This material gives no indication of cis-trans isomerisation behaviour in solution (NMR) and is shown to exist (X-ray) in the trans-form in the solid-state (as do previously reported crystalline samples of 3). A DFT study of 4 reveals similar values of DeltaS(double dagger) and DeltaH(double dagger) if a D type mechanism were operating to rapidly convert cis- to trans-4. However, a significantly higher thermodynamic stability of the trans-isomer relative to the cis-form is revealed versus similar calculations of the Phox derivative 3. This suggests the possibility that (i) reactions of Meox with Li(2)PdCl(4) may lead directly to the trans-form of [PdCl(2)(Meox)(2)] or alternatively (ii) that alkyloxazoline complexes such as 4 may have a different, and presumably much more rapid, mechanism for isomerisation. The results are placed into the context that isomerisation behaviour, or lack thereof, could play a key preliminary role in later substrate modification. This is due to the fact that [PdX(2)(oxazoline)(2)] compounds are well-known (pre-)catalysts for C-C bond forming chemistry.     

Experimental and theoretical aspects of the haptotropic rearrangement of diiron and diruthenium carbonyl complexes bound to 4,6,8-trimethylazulene

The haptotropic rearrangement of dinuclear metal carbonyl species on the conjugate pi-ligand of (micro2,eta3:eta5-4,6,8-trimethylazulene)M2(CO)5 [M = Fe (3) and Ru (4)] was investigated in detail both experimentally and theoretically. The complexes, 3 and 4, were synthesized and characterized by spectroscopy and crystallography. The spin saturation transfer technique of 1H NMR was used to measure the rate constant k of the haptotropic isomerization between the two enantiomers of 3 and 4, from which thermodynamic parameters were determined: (3; deltaS(double dagger) = -7 +/- 1 cal K(-1) mol(-1), deltaH(double dagger) = 22 +/- 1 cal mol(-1), deltaG(double dagger)373 = 25 +/- 1 cal mol(-1)), (4; deltaS(double dagger) = 7 +/- 1 cal K(-1) mol(-1), deltaH(double dagger) = 25 +/- 1 cal mol(-1), deltaG(double dagger)373 = 23 +/- 1 cal mol(-1)). DFT calculations (the B3LYP, B1B95 and PBE1PBE methods) were also carried out using the CEP-31G and cc-pVDZ as the basis set of the transition metal and other elements, respectively, by which both ground state and transition state structures were optimized for the haptotropic rearrangement of 3 and 4. The potential energy surface for these reactions suggests that the reaction involves the conversion of the coordination mode from micro2eta3,eta5- (ground state) to micro2,eta1,eta5- (transition state). Mechanistic consideration, in particular that of differences in transition states between the diiron and diruthenium complexes, is also described.     

Enantiomeric resolution of N,N'-dimethyldithiodianthranilide through diastereomeric silver(I) complex. Circular dichroism spectra, racemization barrier, and molecular self-assembly

Planar chiral N,N'-dimethyldithiodianthranilide (2b) was resolved to enantiomers through a diasteromeric complex with easily accessible silver(I) (1S)-camphorosulfonate (3). The (-)-2b enantiomer was assigned the R absolute configuration from the X-ray crystal structure of the silver complex. The compound is configurationally stable and its racemization occurs through boat-to-boat ring inversion (DeltaG(double dagger) = 36.5 +/- 0.2 kcal mol(-1) at 438 K). The analysis of the CD spectrum of the title compound showed that the n-pi* Cotton effect sign is determined by the helicity of the skewed thiobenzamide chromophore. The molecules of 2b are unable to achieve efficient crystal packing by themselves and easily form inclusion complexes with toluene or pentafluorophenol.