平面正方形配合物取代反应的机理和反位效应(英文)

平面正方形配合物反位效应的起因已经困惑了人们将近一个世纪。作者根据平面正方形配合物取代反应的缔合机理,考虑了配体取代反应进行过程中配体间的排斥作用,分析了最易形成的中间体和过渡态2的空间构型;揭示了反位效应的起因,提出了一种配体排斥理论,从而比较系统和圆满地解释了平面正方形配合物取代反应的反位效应。     

双β-二酮配体配位性的理论研究

基于自洽反应场(SCRF)中的极化连续介质模型(PCM), 采用密度泛函理论B3LYP/6-31G**计算了以二硫醚和芳环为桥基的两类双β-二酮配体的空间构型和电子结构, 结合其配合物晶体结构数据, 研究配体分子电子结构与配位性的关联性. 结果表明, 配体分子的几何构型、前线轨道、偶极矩和电荷布居, 与配合物构型、活性配位原子和配位形式(单核或多核、分子内或分子间)之间的关联性与一致性十分有意义. 配体的理论计算研究可以在一定层次上为配合物几何结构特征和配位特性提供合理的分析与预测.     

水溶性手性Salen Mn(Ⅲ)的光谱性质及其对氨基酸客体的分子识别研究

合成并表征了手性配体Salen H₂及其锰配合物.详细讨论了配体及配合物的红外光谱、电子吸收光谱和圆二色光谱性质.研究结果表明,Salen Mn(Ⅲ)配合物在水溶液中为Δ构型,进一步证明了配合物中双偶氮螯环结构的确具有很高的刚性.用紫外-可见光谱滴定方法测定了锰配合物与氨基酸分子识别过程的缔合常数,实验结果表明:主体Salen Mn(Ⅲ)对每一对氨基酸对映异构体的识别能力均表现为对D-型的识别能力比对L-型大,对具有相同对映构型的不同氨基酸客体的识别能力按Phe, Val和Thr顺序依次递减.圆二色光谱(CD)考察结果与热力学研究结果一致.此外,采用分子力学方法考察了主客体体系的最低能量构象,并对该构象进行了量子化学计算,从理论上对实验事实作了进一步解释.     

水溶性手性Salen Mn(III)的光谱性质及其对氨基酸客体的分子识别研究

合成并表征了手性配体SalenH2 及其锰配合物 .详细讨论了配体及配合物的红外光谱、电子吸收光谱和圆二色光谱性质 .研究结果表明 ,SalenMn(III)配合物在水溶液中为Δ构型 ,进一步证明了配合物中双偶氮螯环结构的确具有很高的刚性 .用紫外 -可见光谱滴定方法测定了锰配合物与氨基酸分子识别过程的缔合常数 ,实验结果表明 :主体SalenMn(III)对每一对氨基酸对映异构体的识别能力均表现为对D 型的识别能力比对L 型大 ,对具有相同对映构型的不同氨基酸客体的识别能力按Phe ,Val和Thr顺序依次递减 .圆二色光谱 (CD)考察结果与热力学研究结果一致 .此外 ,采用分子力学方法考察了主客体体系的最低能量构象 ,并对该构象进行了量子化学计算 ,从理论上对实验事实作了进一步解释 .     

金属串配合物[Cr3(dpa)4LL?](dpa=dipyridylamide;L, L?=Cl, BF4, CCPh)的Cr―Cr成键特性

采用密度泛函理论 UBP86方法计算了 Cr3(dpa)4Cl2(1)、 Cr3(dpa)4(BF4)2(2)、 Cr3(dpa)4 Cl(BF4)(3)、Cr3(dpa)4(CCPh)2(4)和Cr3(dpa)4Cl(CCPh)(5)金属串配合物的结构,并对配合物的构型、 Cr―Cr键的本质以及轴向配体对Cr―Cr键的影响进行了研究.结果表明:(1) Cr―Cr平均键长较长的配合物趋于形成对称构型,较短时趋于形成非对称构型,最稳定的五重态的Cr―Cr平均键长最长,故优化时趋于形成对称构型;七重态Cr―Cr平均键长最短,趋于形成非对称构型;(2)五重态的Cr36+金属链均存在三中心三电子σ键,含弱σ给电子轴向配体BF4-的2和3的Cr―Cr短键还具有弱的π相互作用.七重态下,对称构型4中仅有三中心三电子σ键,而非对称构型1-3、5的Cr―Cr短键为三重键,非对称构型存在Cr36+链的σ离域作用,仍具有分子导线的潜在应用;(3)轴向配体L与Cr的作用主要表现为nL→4sCr或nL→3dz2Cr离域,较强的σ给电子配体CCPh-还存在σC―C→4sCr离域. Cr与L的结合强度为2<3<1<5<4, CCPh-与Cr的结合最强,使Cr―Cr键减弱, Cr―Cr距离增长,故4的各自旋态均为对称构型.     

2-乙酰吡嗪苯甲酰腙钴、锌和铜配合物的晶体结构及荧光性质

合成了配合物[Co(L)_2](1),[Zn(L)_2](2)和[Cu_2(L)_2Cl_2](3)(HL为2-乙酰吡嗪苯甲酰腙),并通过单晶衍射、元素分析及红外光谱表征了它们的结构。单晶衍射结果表明,配合物1和2同构,配体和金属的比例为2∶1。每个配合物中,中心金属离子与来自2个阴离子配体L-的N_2O电子供体配位,形成扭曲的八面体配位构型。在双核配合物3中,Cu(Ⅱ)离子与1个阴离子三齿酰腙配体、2个μ2桥联的氯离子配位,拥有扭曲的四方锥配位构型。此外还研究了配合物的荧光性质。     

二（1,8—萘啶氮氧化物）合硝酸铜（Ⅱ）的晶体结构

1,8-萘啶氮氧化物(简写napyo)是一种配位能力较强的中性配体,关于它与金属离子形成的配合物已有报道.但工作主要集中在配合物的合成及性质的研究,它与金属离子形成的配合物的晶体结构至今未见报道.本工作旨在探讨1,8-萘啶氮氧化物与铜(Ⅱ)的配合物中配体与金属离子的配位情况以及铜(Ⅱ)的配位构型.     

吡啶-3-甲醛缩氨基硫脲合镍(Ⅱ)、锌(Ⅱ)配合物的合成、晶结构及生物活性

本文合成并表征了吡啶-3-甲醛缩氨基硫脲(HL)合镍(Ⅱ)、锌(Ⅱ)配合物.在配合物[NiL2(1)中,镍(Ⅱ)离子与来自2个脱氢配体的2个氮原子和2个硫原子配位.形成四配位的平面正方形构型.在配合物[Zn(HL)2(C2H5OH)2(H2O)2](NO3)2(2)中,锌(Ⅱ)离子与2个中性配体、2个乙醇分子和2个水分子配位,配位原子在锌(Ⅱ)离子周围形成畸变的八面体构型.通过荧光吸收法研究了配合物1、2与小牛胸腺DNA的作用机理.结果表明,这2个配合物均以插入形式进入DNA的碱基对.此外,还研究了配体及2个配合物对金黄色葡萄球菌、乙型溶血性链球菌、肺炎链球菌、炭疽杆菌的抗菌活性.结果表明,配体及配合物1对上述测试菌种无抑制作用.配合物2对前面3种有弱的抑菌作用.     

19电子配合物非线型M—C—O本质的密度泛函研究(M=Fe,Ru,Os)

采用密度泛函理论方法,对一系列19电子铁族配位化合物CpM(CO)2L·进行了结构优化和能量计算.计算结果表明:配体L为羰基时,同族三金属Fe,Ru和Os配合物中都会出现一个弯曲的M—C—O,金属M的电子转移到CO上以满足18电子规则的特征;当L为磷配体时,Fe配合物中2个M—C—O都是线型的.而Ru和Os两者表现类似,可以存在2种不同的结构:第1种是2个M—C—O都是线型的;第2种是有一个线型M—C—O,而另一个M—C—O是弯曲的.理论计算得到的弯曲结构更稳定的结果和实验相符.配合物几何结构的差异可以通过三金属原子的电子构型、原子半径和电子转移得到解释.     

羰基镍簇Ni(CO)n(n=1-4)的结构和Ni-CO键解离性质的密度泛函理论研究

在密度泛函理论框架下, 应用不同泛函计算了配合物Ni(CO)n(n=1~4)的平衡几何构型和振动频率. 考察了泛函和基组重叠误差对预测Ni—CO键解离能的影响. 计算结果表明, 用杂化泛函能得到与实验一致的优化几何构型和较合理的振动频率. 对Ni(CO)n(n=2~4)体系, 用“纯”泛函, 如BP86和BPW91, 可得到与CCSD(T)更符合、 并与实验值接近的解离能. 当解离产物出现单个金属原子或离子(如金属羰基配合物的完全解离)时, BSSE校正项的计算中应保持金属部分的电子结构一致. 只有考虑配体基组和不考虑配体基组两种情况下金属的电子构型与配合物中金属的构型一致时, 才能得到合理的BSSE校正, 从而预测合理的解离能.     

对称性和配合物的构型——Ⅱ.混合配体配合物

从库仑定律出发,采用最优化法,计算了MLaL_b′型配合物各种几何异构体的几何构型稳定化能。在计算中考虑了配体L、L′的相对电荷。 计算结果表明,对称性是决定构型的首要因素。具体构型与配体的相对电荷有关。 在若干配合物中,中心原子的dⁿ构型决定其构型的骨架。 配体对构型的作用也应予考虑。对共价性程度大的配合物,应考虑轨道重叠对构型的影响。     

On the competition of the purine bases,functionalities of peptide side chains,and protecting agents for the coordination sites of dicationic cisplatin derivatives

The Pt-L bond energies of simple triammineplatinum(II) complexes, [Pt(NH(3))(3)L](2+), with oxygen-, nitrogen-, and sulfur-containing donor ligands L have been predicted and rationalized using density functional theory. The ligands L have been chosen as models for functionalities of peptide side chains, for sulfur-containing protecting agents, and for adenine and guanine sites of the DNA as the ultimate target of platinum anticancer drugs. Calculation of the Pt-L bond energy in [Pt(NH(3))(3)L](2+) reveals that the soft metal center of triammineplatinum(II) prefers N ligands over S ligands. This remarkable result has been discussed in light of several interpretations of the hard and soft acids and bases principle. The concept of orbital-symmetry-based energy decomposition has been employed for the determination of the contributions from sigma and pi orbital interactions, electrostatics, and intramolecular hydrogen bonding to the Pt-L bond energy. The calculations show that considerable differences in the bond energies of the triammineplatinum(II) complexes with N-heterocycles such as 1-methylimidazole, 9-methyladenine, and 9-methylguanine arise from electrostatics rather than from orbital interactions. Surprisingly, the net stabilization by hydrogen bonding between the (Pt)N-H group and the oxygen of 9-methylguanine is as weak as the intramolecular hydrogen bond in the aqua complex [Pt(NH(3))(3)(H(2)O)](2+), challenging the common hypothesis that DNA-active anticancer drugs require carrier ligands with N-H functionalities because of their hydrogen-bonding ability. The influence of a polarizable environment on the stability of the complexes has been investigated systematically with the dependence of the dielectric constant epsilon. With increasing epsilon, the complexes with S-containing ligands are more strongly stabilized than the complexes of the N-containing heterocycles. At epsilon = 78.4, the dielectric constant of water, 9-methylguanine remains the only purine derivative investigated which is competitive to neutral sulfur ligands. These findings are particularly important for a rationalization of the results from recent experimental studies on the competition of biological donor ligands L for coordination with the metal center of [Pt(dien)L](2+) (dien = 1,5-diamino 3-azapentane).     

Role of s-p orbital mixing in the bonding and properties of second-period diatomic molecules

Qualitative molecular orbital theory is widely used as a conceptual tool to understand chemical bonding. Symmetry-allowed orbital mixing between atomic or fragment orbitals of different energies can greatly complicate such qualitative interpretations of chemical bonding. We use high-level Amsterdam Density Functional calculations to examine the issue of whether orbital mixing for some familiar second-row homonuclear and heteronuclear diatomic molecules results in net bonding or antibonding character for a given molecular orbital. Our results support the use of slopes of molecular orbital energy versus bond distance plots (designated radial orbital-energy slope: ROS) as the most useful criterion for making this determination. Calculated atomic charges and frontier orbital properties of these molecules allow their acid-base chemistry, including their reactivities as ligands in coordination chemistry, to be better understood within the context of the Klopman interpretation of hard and soft acid-base theory. Such an approach can be extended to any molecular species.     

Orbital‐Like Motion of Hydride Ligands around Low‐Coordinate Metal Centers

Hydrogen atoms in the coordination sphere of a transition metal are highly mobile ligands. Here, a new type of dynamic process involving hydrides has been characterized by computational means. This dynamic event consists of an orbital‐like motion of hydride ligands around low‐coordinate metal centers containing N‐heterocyclic carbenes. The hydride movement around the carbene–metal–carbene axis is the lowest energy mode connecting energy equivalent isomers. This understanding provides crucial information for the interpretation of NMR spectra.     

植物多酚模型体系与V(Ⅴ)的配位机理

通过实验和量子化学计算研究了植物多酚分解产物表棓儿茶素棓酸酯(EGCG)与V(Ⅴ)配合物的反应机理和光谱性质. 紫外-可见光谱分析发现, V(Ⅴ)与EGCG形成了二配位化合物, 该配合物在588和710 nm处均有吸收, 最大吸收峰在588 nm处. 通过含时密度泛函理论计算得到该配合物的模型化合物的吸收光谱. 用量子化学方法在B3LYP/6-311G水平上研究了多酚类化合物与V(Ⅴ)配位反应的机理, 获得了体系势能面信息及反应能垒, 证实了配位反应历程中存在多个基元反应, 并历经四元环状过渡态形成二配位化合物.     

Copper cation interactions with biologically essential types of ligands: a computational DFT study

This work presents a systematic theoretical study on Cu(I) and Cu(II) cations in variable hydrogen sulfide-aqua-ammine ligand fields. These ligands model the biologically most common environment for Cu ions. Molecular structures of the complexes were optimized at the density functional theory (DFT) level. Subsequent thorough energy analyses revealed the following trends: (i) The ammine complexes are the most stable, followed by those containing the aqua and hydrogen sulfide ligands, which are characterized by similar stabilization energies. (ii) The most preferred Cu(I) coordination number is 2 in ammine or aqua ligand fields. A qualitatively different binding picture was obtained for complexes with H(2)S ligands where the 4-coordination is favored. (iii) The 4- and 5-coordinated structures belong to the most stable complexes for Cu(II), regardless of the ligand types. Vertical and adiabatic ionization potentials of Cu(I) complexes were calculated. Charge distribution (using the natural population analysis (NPA) method) and molecular orbital analyses were performed to elucidate the nature of bonding in the examined systems. The results provide in-depth insight into the Cu-binding properties and can be, among others, used for the calibration of bioinorganic force fields.     

A theoretical analysis of the explanation of the significant differences in antiferromagnetic interactions between homologous μ-alkoxo and acetate bridged dicopper(II) complexes: ab initio and semi-empirical calculations

A magnetostructural classification of dimmers, containing the Cu (μ-alkoxo) Cu core, based on data obtained from X-ray diffraction analysis reported in the literature has been performed. In these complexes, the local geometry around the copper ions is generally a square planar and each copper ion is surrounded by one N atom and three O atoms. The influence of the overlap interactions between the bridging ligands and the metal (Cu) d orbitals on the super-exchange coupling constant has been studied by means of ab initio Restricted Hatree–Fock molecular orbital calculations. The interaction between the magnetic d orbitals and highest occupied molecular orbitals of the acetate oxygens has been investigated in homologous μ-acetato-bridged dicopper(II) complexes which have significantly different −2J values (the energy separation between the spin-triplet and spin-singlet states). In order to determine the nature of the fronter orbitals, Extended Hückel molecular Orbital calculations are also reported. Ab initio restricted Hartree–Fock calculations have shown that the acetato bridge and the alkoxide bridge contribute to the magnetic interaction countercomplementarily to reduce antiferromagnetic interaction.     

Analyzing Pt chemical shifts calculated from relativistic density functional theory using localized orbitals: the role of Pt 5d lone pairs

Pt chemical shifts were calculated from two-component relativistic density functional theory (DFT). The shielding tensors were analyzed by using a recently developed method to decompose the spin-orbit DFT results into contributions from spin-free localized orbitals (here: natural localized molecular orbitals (NLMOs) and natural bond orbitals (NBOs)). Seven chemical shifts in six Pt complexes with Pt oxidation states II, III, and IV; and halide, amino, and amidate ligands were analyzed, with particular focus on the role of nonbonding Pt 5d orbitals. A simple d-orbital 'rotation' model has been used to rationalize some of the observed trends such as the main difference between Pt(II) and Pt(IV) chemical shifts. The localized orbital analysis data showed that most of this difference as well as trends among different Pt complexes with similar coordination can be rationalized by comparing properties of the nonbonding Pt 5d orbitals. We have also analyzed the spin-orbit effects on the chemical shifts of [PtCl4](2-) compared to [PtBr4](2-).     

咔咯锰(Ⅲ)与锰(V)-氧配合物与含氮配体的轴向配位性质

采用密度泛函理论(DFT)的BP86方法对含氮配体咪唑、甲基咪唑、异丙基咪唑和吡啶与5,10,15-三(五氟苯基)咔咯锰[(TPFC)Mn^Ⅲ]和5,10,15-三(五氟苯基)咔咯锰氧[(TPFC)Mn^VO]的轴向配位性质进行理论研究.计算结果表明配体能与五重态下的(TPFC)Mn^Ⅲ形成有效的轴向配位作用,结合能绝对值次序为：咪唑>4-甲基咪唑>吡啶,与实验结果一致. 另外,结合能和轴向配位键长数据显示,这些配体不能与基态(单重态)或三重态(TPFC)Mn^VO中的Mn^V原子形成有效的轴向配位作用,自然键轨道(NBO)分析表明其Mn^V没有空的3d 轨道来接受配体的孤对电子,但配体可与三重态下的(TPFC)Mn^VO形成弱的配位作用.     

The role of 3d orbitals in the bonding of phosphorus compounds

Ab initio LCAO-MO-SCF calculations for several typical molecules containing phosphorushave been undertaken to study the role of phosphorus 3d orbitals in the bonding.It is emphasizedthat the discussion about the 3d orbital participation in bonding should be based on a reasonable choiceof basis sets and it seems suitable to choose the atomic orbitals in proper molecular environment asthe basis set.As an approximation,the optimized minimal STO-NG basis sets have been adoptedin the present paper.The results obtained well exhibit the model of 3d orbital participation in bonding.It is shown that under the influence of highly electronegative ligands the phosphorus 3d orbitals con-tract greatly,their energy levels drop considerably,and thus they can effectively participate in bond-ing.The presence of highly electronegative ligands seems necessary.The contribution of 3d orbitalsto bonding is achieved mainly through the concertedformation of σ bonds and p-d backbonds,thoughthe contribution to σ bonding is minor.The three-center,four-electron bond modelis only approxi-mately correct.The results of the present paper demonstrate that the model of 3d orbital participationin bonding favoured by experimental chemists is reasonable and possesses sound ground.