Binding N2, N2H2, N2H4, and NH3 to transition-metal sulfur sites: modeling potential intermediates of biological N2 fixation

In the quest for low-molecular-weight metal sulfur complexes that bind nitrogenase-relevant small molecules and can serve as model complexes for nitrogenase, compounds with the [Ru(PiPr(3))('N(2)Me(2)S(2)')] fragment were found ('N(2)Me(2)S(2)'(2-)=1,2-ethanediamine-N,N'-dimethyl-N,N'-bis(2-benzenethiolate)(2-)). This fragment enabled the synthesis of a first series of chiral metal sulfur complexes, [Ru(L)(PiPr(3))('N(2)Me(2)S(2)')] with L=N(2), N(2)H(2), N(2)H(4), and NH(3), that meet the biological constraint of forming under mild conditions. The reaction of [Ru(NCCH(3))(PiPr(3))('N(2)Me(2)S(2)')] (1) with NH(3) gave the ammonia complex [Ru(NH(3))(PiPr(3))('N(2)Me(2)S(2)')] (4), which readily exchanged NH(3) for N(2) to yield the mononuclear dinitrogen complex [Ru(N(2))(PiPr(3))('N(2)Me(2)S(2)')] (2) in almost quantitative yield. Complex 2, obtained by this new efficient synthesis, was the starting material for the synthesis of dinuclear (R,R)- and (S,S)-[micro-N(2)[Ru(PiPr(3))('N(2)Me(2)S(2)')](2)] ((R,R)-/(S,S)-3). (Both 2 and 3 have been reported previously.) The as-yet inexplicable behavior of complex 3 to form also the R,S isomer in solution has been revealed by DFT calculations and (2)D NMR spectroscopy studies. The reaction of 1 or 2 with anhydrous hydrazine yielded the hydrazine complex [Ru(N(2)H(4))(PiPr(3))('N(2)Me(2)S(2)')] (6), which is a highly reactive intermediate. Disproportionation of 6 resulted in the formation of mononuclear diazene complexes, the ammonia complex 4, and finally the dinuclear diazene complex [micro-N(2)H(2)[Ru(PiPr(3))('N(2)Me(2)S(2)')](2)] (5). Dinuclear complex 5 could also be obtained directly in an independent synthesis from 1 and N(2)H(2), which was generated in situ by acidolysis of K(2)N(2)(CO(2))(2). Treatment of 6 with CH(2)Cl(2), however, formed a chloromethylated diazene species [[Ru(PiPr(3))('N(2)Me(2)S(2)')]-micro-N(2)H(2)[Ru(Cl)('N(2)Me(2)S(2)CH(2)Cl')]] (9) ('N(2)Me(2)S(2)CH(2)Cl'(2-) =1,2-ethanediamine-N,N'-dimethyl-N-(2-benzenethiolate)(1-)-N'-(2-benzenechloromethylthioether)(1-)]. The molecular structures of 4, 5, and 9 were determined by X-ray crystal structure analysis, and the labile N(2)H(4) complex 6 was characterized by NMR spectroscopy.     

N,N,N'''',N''''-四[2-(1-乙基苯并咪唑)甲基]乙二胺及其高氯酸盐的晶体结构

本文通过单晶X-射线衍射法测定了EtEDTB1.4C2H5OH5H2O 1和H4EtEDTB(ClO4)4 C2H5OH 2的晶体结构。晶体学数据如下:1的分子式为C44.8H66.4N10O6.4, Mr = 847.48, 属三斜晶系, 空间群P, a = 11.489 (2), b = 11.866(3), c = 12.002(3) , = 97.47(2), ?= 114.564(13), ?= 114.11(2)? V = 1266.6(5) 3, Z = 1, Dc = 1.111 g/cm3, F(000) = 456, m(MoK? = 0.076 mm-1。共收集衍射数据5207条, 其中独立衍射数据4323条(Rint = 0.0257), 1318条可观测衍射数据(I > 2(I))用于结构计算。结构由直接法解出, 并用全矩阵最小二乘法修正, 最终偏离因子R = 0.0706, wR = 0.1802。分子具有对称中心, 4个苯并咪唑基团围绕中心呈螺旋桨状均匀排布。在1的晶体中, EtEDTB分子通过水和乙醇的氢键相连形成二维网状结构。2的分子式为C44H58Cl4N10O17, Mr = 1140.80, 属单斜晶系, 空间群C2/c, a = 24.260(5), b = 13.040(3), c = 17.680(4) , ?= 97.50(3)? V = 5545.2(2) 3, Z = 4, Dc = 1.366 g/cm3, F(000) = 2384, m(MoK? = 0.289 mm-1。共收集衍射数据12055条, 其中独立衍射数据6360条(Rint = 0.0408), 2875条可观测衍射数据(I > 2(I))用于结构计算。结构由直接法解出, 并用全矩阵最小二乘法修正, 最终偏离因子R = 0.0692     

N,1-(15)N2]-2'-deoxyadenosines

[reaction: see text] An efficient route to deoxyadenosine derivatives labeled on both the amino group and nitrogen 1 is uncovered. First, 3',5'-di-O-acetyl-2'-deoxy-1-(2-nitrobenzenesulfonyl)inosine (2a) and only 1.1 equiv of (15)NH4Cl are used for labeling position 1 (1a) through the isolation of the open intermediate and its cyclization with DBU in anhydrous CH3CN. Inosine 1a is then converted to [N,1-(15)N2]-3',5'-di-O-acetyl-N6-benzoyl-2'-deoxyadenosine (5a, the precursor of 6a) via a Pd/dppf-catalyzed chloride-to-benzamide replacement, by using again only 1.1 equiv of the labeling source.     

Relaxation of H2O from its /04>- vibrational state in collisions with H2O, Ar, H2, N2, and O2

We report rate coefficients at 293 K for the collisional relaxation of H2O molecules from the highly excited /04>(+/-) vibrational states in collisions with H2O, Ar, H2, N2, and O2. In our experiments, the mid R:04(-) state is populated by direct absorption of radiation from a pulsed dye laser tuned to approximately 719 nm. Evolution of the population in the (/04>(+/-)) levels is observed using the combination of a frequency-quadrupled Nd:YAG laser, which selectively photolyses H2O(/04>(+/-)), and a frequency-doubled dye laser, which observes the OH(v=0) produced by photodissociation via laser-induced fluorescence. The delay between the pulse from the pump laser and those from the photolysis and probe lasers was systematically varied to generate kinetic decays. The rate coefficients for relaxation of H2O(/04>(+/-)) obtained from these experiments, in units of cm3 molecule(-1) s(-1), are: k(H2O)=(4.1+/-1.2) x 10(-10), k(Ar)=(4.9+/-1.1) x 10(-12), k(H2)=(6.8+/-1.1) x 10(-12), k(N2)=(7.7+/-1.5) x 10(-12), k(O2)=(6.7+/-1.4) x 10(-12). The implications of these results for our previous reports of rate constants for the removal of H2O molecules in selected vibrational states by collisions with H atoms (P. W. Barnes et al., Faraday Discuss. Chem. Soc. 113, 167 (1999) and P. W. Barnes et al., J. Chem. Phys. 115, 4586 (2001).) are fully discussed.     

Microsolvation of N2H): the nature of interactions in N2H+-(H2)n (n = 1-14) complexes

Experimental studies of the consecutive growth of N2H + (H2)n clusters led to the discovery of an unusual bonding pattern for species with n = 2-4. Theoretical studies revealed that the ligands are located within five well-separated solvation shells that are visible in structures, values of successive enthalpies and entropies of clustering reactions, vibrational motions, the distribution of atomic charges, and interaction energy decomposition components. The pattern of consecutive enthalpy changes for the second shell (n = 2-5) is complicated. This pattern shows anomalous behavior, although its interpretation is not univocal. A large part of consecutive enthalpies for the clustering reactions is a contribution due to the rotational and vibrational properties of clusters which are difficult for adequate modeling in large systems. The structures of clusters are rationalized based on interaction energy contributions of a different nature. Geometries of complexes are determined by prevailing covalent forces.