智能聚合物基材料富集磷酸化肽和糖肽的研究进展

翻译后修饰是蛋白质组学研究的前沿和重点,它不仅调节着蛋白质的折叠、状态、活性、定位以及蛋白质间的相互作用,也能帮助科学家更全面地了解生物体的生命过程,为疾病的预测、诊断和治疗提供更加强大的支撑和依据。翻译后修饰产物(例如磷酸化肽和糖肽)丰度很低,且存在着强烈的背景干扰,很难直接用质谱进行分析,因此迫切需要开发高效的富集材料和技术来选择性富集翻译后修饰产物。近年来,智能聚合物基材料通过外部物理、化学或生物刺激可逆地改变其结构和功能,实现对磷酸化肽和糖肽高度可控的吸附和脱附,进而衍生开发出一系列新颖的富集方法,极大地吸引研究者们的兴趣。一方面,智能聚合物基材料的响应变化包括材料疏水性的增加或减少、形状和形貌的改变、表面电荷的重新分布以及亲和配体的暴露或隐藏等特性。这些特性使得目标物和智能聚合物基材料之间的亲和力可以通过简单改变外部条件(如温度、pH值、溶剂极性和生物分子等)实现更可控和更智能的精细调节。另一方面,智能聚合物基材料为集成功能模块提供了便捷的可扩展平台,例如特定的识别组件,显著提高了目标物质的分离选择性。智能聚合物基材料在分离方面展现出巨大的潜力,这为蛋白质翻译后修饰产物的分析和研究带来了希望。围绕上述主题,该文依据Web of Science近20年来近50篇代表性文献,概述了智能聚合物基材料在磷酸化肽和糖肽分离及富集中的发展方向。     

两性离子双功能化超亲水金属有机框架纳米复合材料的制备及其用于糖肽的选择性富集

蛋白糖基化是生物体中普遍发生且重要的生物学过程,其参与多种分子生物学的功能和途径,是临床诊断重要的生物标志物.但是,糖肽因其丰度低、离子化效率低、糖链异质性等难点,使糖蛋白分析一直面临巨大的挑战.因此,研究合成了一种新型的两性离子双功能化纳米金(AuGC)修饰的超亲水性沸石咪唑骨架(ZIF-8)纳米复合材料(AuGC/...     

末端功能化的树枝状聚合物载体与质粒组装的热力学和动力学

通过二代和四代聚酰胺-胺树枝状聚合物(G2和G4表示)末端分别修饰苯丙氨酸和色氨酸合成了多种新型聚合物载体,进而考察了其与质粒的组装行为.研究结果显示,Phe-G4和Trp-G4与质粒组装为结构致密的纳米粒子,其中Phe-G4与质粒形成的纳米粒子更加紧密.这一过程是由聚合物载体与质粒间的静电相互作用和结构重排共同驱动的.此外,末端修饰方法显著降低了载体的细胞毒性.细胞转染结果表明,Phe-G4和Trp-G4成功介导质粒pEGFP-CL在COS-7细胞中表达,Phe-G4/pEGFP-CL的转染效率提高到作为阳性对照的脂质体组的4倍以上.因此,Phe-G4载体是一种有应用潜力的新型基因传递系统.     

基于强阳离子交换色谱分离的磷酸化肽段富集策略

为了在短时间内获得相对含量高的磷酸化肽段,以标准磷酸化蛋白质为模型对强阳离子交换色谱（SCX）分离磷酸化肽段体系的缓冲溶液和梯度设置进行了研究,并用酵母酶切肽段混合物考察了该路线在较复杂的样品中的应用。实验结果表明优化后的体系能够在30 min内分离出磷酸肽段,而且非磷酸化肽段的干扰很少,这样便相对提高了磷酸化肽段在质谱仪中的响应强度,重要的是该体系可以对复杂样品进行很好的分离。这说明SCX用于规模化磷酸化肽段富集的策略是可行的。本研究为磷酸化蛋白质组学规模化分析提供了实用技术。     

基于碘离子选择性电极的流动注射分析系统构建

碘硫(IS)热化学循环分解水是目前最有前景的核能制氢技术.在IS循环研究中,I-浓度的在线分析对于实现过程反应条件的监测控制以及进行有关反应动力学研究非常重要.以碘离子选择性电极为检测器,针对IS循环物料组成体系组装了一套流动注射分析系统,考察了样品温度、氢离子浓度、离子强度等因素对电极性能的影响,对FLA装置的栽流流...     

基于共价色谱分离的含半胱氨酸肽段富集策略

多维色谱分离、串联质谱分析技术已在蛋白质组研究中得到广泛应用。然而生物样品的蛋白质以及全酶切肽段具有高度的复杂性,这严重干扰了蛋白质高通量、规模化的分析。通过标签肽段富集进行样品预分离可以降低体系的复杂程度。本文建立了一种基于共价色谱技术选择性分离富集含半胱氨酸肽的方法,从而降低了样品体系的复杂程度。首先以牛血清白蛋白(BSA)的酶切肽段为模型,对富集条件进行了优化和考察,并在此基础上通过5种蛋白质酶切肽段混合物的富集对该方法进行了验证。结果证明此方法的重现性好,富集效率高,富集特异性好,能有效地富集鉴定含半胱氨酸肽段。所建立的方法在复杂体系的蛋白质组研究中具有广泛的应用前景,为复杂样品的蛋白质高通量、自动化、规模化鉴定和定量研究提供了实用技术。     

季铵化聚酰胺胺树状聚合物封装的RuRh双金属DENs催化聚(甲基氢硅氧烷)区域选择性改性研究

采用共络合法制备了部分季铵化的第五代聚酰胺胺树状聚合物封装的RuRh双金属纳米粒子(DENs)催化剂, 分别利用紫外-可见光谱、光散射分析和透射电镜表征了该树状聚合物封装的RuRh双金属纳米粒子的形成、粒径及其分布. 红外光谱和核磁共振谱分析表明, RuRh双金属DENs催化剂对聚(甲基氢硅氧烷)的硅氢化改性显示了较高的催化活性和良好的区域选择性.     

官能化二硫缩烯酮的选择性α-溴代反应

发展了一种适用范围广、高效且高选择性的官能化二硫缩烯酮的α-溴代反应.在少量水存在下,在四氢呋喃溶液中,以溴化铜为溴代试剂,经由官能化二硫缩烯酮(1)的α-溴代反应制备了结构多样的α-溴代二硫缩烯酮(2).     

介孔氧化铁材料快速、高效富集分离磷酸化肽段和蛋白的新方法研究

以0.1μmol/Lβ-casein磷酸化蛋白酶解液为对象,利用在酸性条件下对PO43-能够特异性吸附的氧化铁材料为新载体,对介孔氧化铁材料富集分离磷酸化肽段的孵育液酸含量、孵育液有机溶剂含量和洗脱液选择的条件进行了优化,结果表明:室温条件下,在含有0.1%乙酸和30%乙腈的孵育液中孵育5min后,经1mol/LNH3.H2O溶液的洗脱,介孔氧化铁可有效地将磷酸化肽段从蛋白酶解液中富集分离。本方法也可以选择性地提取α-casein磷酸化蛋白,实现了简单、快速、高效的磷酸化肽段和蛋白的富集分离。同时,通过MALDI-TOF串级质谱分析,成功地完成了在优化条件下分离出的磷酸化肽段磷酸位点的鉴定。     

硅锆复合氧化物的制备、表征及其在磷酸化肽段富集中的应用

采用溶胶-凝胶法制备了氧化硅-氧化锆复合氧化物(SiO2-ZrO2),并对其物理与化学性质进行了详细地表征.以α-酪蛋白的酶解产物为探针,比较了氧化硅-氧化锆复合氧化物与氧化锆对磷酸化肽段的富集能力.结果表明: 在pH<2时富集,SiO2-ZrO2对磷酸化肽的选择性要优于ZrO2;使用SiO2-ZrO2材料时,多磷酸化肽段的回收率更高.结合MALDI-TOF MS检测技术,SiO2-ZrO2成功地应用于脱脂牛奶酶解产物中磷酸化肽的分离和富集.     

Boronic acid functionalized fibrous cellulose for the selective enrichment of glycopeptides

Enrichment of glycoproteins has been important because of their dynamicity and role in biological systems. Study of glycoproteins is complex because of the simultaneous glycosylation and deglycosylation inside the body. Often employed affinities for glycopeptides are hydrazide, boronic acid, or physiosorbed lectin on support materials. Cellulose, a natural polysaccharide, has rich surface chemistry, stable structure, low cost and availability in different variants. In present study, fibrous cellulose is oxidized using periodate to modify with boronic acid. Attachment of boronic acid is confirmed by Fourier transform infrared spectroscopy. Particle size and morphology of boronic acid@fibrous cellulose is studied by scanning electron microscopy. The enrichment efficiency is evaluated by using horseradish peroxidase as model protein. Boronic acid@fibrous cellulose is selective up to 1:250 for spiked horseradish peroxidase in bovine serum albumin digest, sensitive down to 0.1 femtomol and recovering 88.15% glycopeptides. Moreover, protein binding capacity is determined as 213 mg/g and 41% sequence coverage of horseradish peroxidase protein with all eight glycosylation sites detected. Total of 18 glycopeptides are enriched from immunoglobulin digest showing ability of boronic acid@fibrous cellulose to enrich glycoproteins from multiglycoforms. Enrichment from human serum recovers 18% extracellular and 72% secreted glycoproteins via bottom‐up approach and online tools.     

基于叠氮基-氰基点击化学的苯硼酸亲和硅胶的制备及其在糖蛋白/糖肽选择性富集中的应用

硼亲和色谱法在糖肽/糖蛋白选择性富集中的应用趋于成熟。硼酸亲和材料的选择性，生物相容性，制备过程是否简便均是开发新型苯硼酸功能化材料需要考虑的问题。该研究立足硼酸亲和材料开发的关键问题，设计并开发了一种新型苯硼酸亲和硅胶（TCNBA）。该材料采用基于叠氮基-氰基的无铜催化点击化学方法进行合成，生物相容性好，制备方法简便。红外光谱和X射线光电子能谱图表征结果证明材料合成成功。TCNBA的糖肽富集选择性利用基质辅助激光解吸电离飞行时间质谱（MALDI-TOF MS）进行评价，结果表明，TCNBA能够分别从辣根过氧化物酶（HRP）和免疫球蛋白G（IgG）酶解液中鉴定出13个和11个糖肽；以HRP和牛血清白蛋白（BSA）酶解液混合物（物质的量比1：10）作为研究对象，富集后能够鉴定出5个糖肽。TCNBA的糖蛋白富集选择性利用十二烷基磺酸钠-聚丙烯酰胺凝胶电泳法（SDS-PAGE）进行评价，以HRP、IgG、核糖核酸酶B（RNaseB）作为考察对象，结果表明，TCNBA对糖蛋白具有较好的富集选择性。以实际样品人血清为测试对象验证TCNBA在实际生物样品中的应用价值。结果显示，富集后非糖蛋白得到较大程度去除，糖蛋白得以富集。所制备的材料和方法具有大规模实际蛋白质样品分离处理的应用前景。     

Hydrazide-functionalized magnetic microspheres for the selective enrichment of digested tryptophan-containing peptides in serum

The extreme complexity of protein samples is becoming a great challenge for proteomic analysis, especially for those having large dynamic range of protein abundance. To solve this problem, and to overcome the limitation of the current proteomic technologies, a new method using hydrazide-functionalized magnetic microspheres was established in this study. With this method, tryptophan (Trp)-containing peptides can be selectively and sensitively enriched from complex and low-volume samples. Furthermore, combined with 1D-LC-MS/MS analysis, the strategy was successfully applied to the proteomic study of mouse serum. The proportion of Trp-containing peptides was increased from 19.4% to 80.2% through enrichment, and the complexity of the sample was reduced more than two times. An additional 113 Trp-containing peptides and 48 novel proteins were detected compared to the conventional method. This enrichment method provides a means for identifying more proteins as potential biomarkers in serum and other complex samples.     

Selective enrichment of glycopeptides based on copper tetra(N‐carbonylacrylic) aminephthalocyanine and iminodiacetic acid functionalized polymer monolith

Efficient separation and enrichment of low‐abundance glycopeptides from complex biological samples is the key to the discovery of disease biomarkers. In this work, a new material was prepared by coating copper tetra(N‐carbonylacrylic) aminephthalocyanine and iminodiacetic acid onto poly(glycidyl methacrylate‐pentaerythritol triacrylate) monolith. The monolith was applied to polymer monolithic microextraction for specific capture of glycopeptides coupled with matrix‐assisted laser desorption/ionization time‐of‐flight mass spectrometry. The developed monolith exhibited satisfactory efficiency for glycopeptide enrichment with high selectivity and detection sensitivity. When the tryptic digest of immunoglobulin G was used as the sample, total 24 glycopeptides were identified and the detection limit was determined as 5 fmol. When the approach was applied to the analysis of glycopeptides in the mixture of bovine serum albumin and immunoglobulin G (100:1, m/m) digests, 16 glycopeptides could still be observed. Moreover, the monolith was successfully applied to the selective enrichment of glycopeptides from human serum digests, exhibiting great practicability in identifying low‐abundance glycopeptides in complex biological samples.     

Highly selective and efficient imprinted polymers based on carboxyl‐functionalized magnetic nanoparticles for the extraction of gallic acid from pomegranate rind

With the combined surface imprinting technique and immobilized template strategy, molecularly imprinted magnetic nanoparticles were successfully prepared and coupled with high‐performance liquid chromatography to selectively separate and determine gallic acid from the pomegranate rind. On the surface of carboxyl‐functionalized magnetic nanospheres, thin imprinting shells were formed using dopamine as monomer and crosslinker. The characteristics, polymerization conditions, and adsorption performances of the resultant nanomaterials were investigated in detail. In addition of good crystallinity, satisfactory magnetism, and uniform morphology of the obtained polymers, they had rapid binding kinetics, high adsorption capacity, and favorable reusability. In the mixed solution of four hydroxybenzoic acids, the prepared nanomaterials have an excellent selectivity to gallic acid with an imprinting factor of as high as 17.5. Therefore, the polymers have great potentials in specific extraction and enrichment of gallic acid from the complex natural resources.     

4-巯基苯硼酸修饰二维二硫化钼纳米复合材料的制备及其用于N-糖肽特异性富集

蛋白质的N-糖基化修饰在多种生物过程中发挥着至关重要的作用,近年来的许多研究证实异常的蛋白质糖基化与多种疾病的发生发展密切相关,表明糖基化蛋白质具有较大的潜力成为新的生物标志物或者药物靶标。在样本的处理过程中,对N-糖基化肽段进行富集分离后再进行质谱分析已经成为糖蛋白质组学分析前的必要步骤。但是,由于复杂生物样本中N-糖基化肽段的丰度低和离子化效率差等问题,通过质谱鉴定N-糖肽仍然是一项艰巨的任务。研究通过将纳米金线(Au)、4-巯基苯硼酸(4-MPB)与超薄二维二硫化钼(2D-MoS₂)进行反应,成功制备了一种用于富集蛋白质N-糖基化肽段的新型功能纳米复合材料(MoS₂/Au/4-MPB)。二硫化钼纳米材料的层状结构可以为反应提供大量的可修饰位点,便于修饰纳米金线;功能基团4-巯基苯基硼酸对N-糖肽具有高度的选择性,可以对生物样品中N-糖基化肽段进行特异性富集。使用标准蛋白人免疫球蛋白G(IgG)和牛血清白蛋白(BSA)胰蛋白酶酶切产物对新型功能纳米材料的N-糖基化肽段的富集性能进行评估,其灵敏度达到5 fmol,选择性达到1∶1 000。...     

A 15-crown-5-functionalized carbosilane dendrimer as ionophore for ammonium selective electrodes

The synthesis of CH(2)CHCH(2)OCH(2)[15-crown-5] (III) is achieved by the treatment of HOCH(2)- [15-crown-5] (I) with equimolar amounts of CH(2)CHCH(2)Br (II) in the presence of KOH. The hydrosilylation of III with Si(CH(2)CH(2)CH(2)SiMe(2)H)(4) (IV) in the presence of the Karstedt catalyst affords the crown ether end-capped carbosilane dendrimer Si(CH(2)CH(2)CH(2)Si-Me(2)CH(2)CH(2)CH(2)OCH(2)[15-crown-5])(4) (V). PVC-based membranes of V as ionophore with sodium tetraphenyl borate (NaTPB) as anion excluder and dioctyl phthalate (DOP), diphenyl ether (DPE), dibutyl amine (DBA) and dibutyl phthalate (DBP) as plasticizing solvent mediators were prepared and investigated as NH(4)(+)-selective electrode. The response of the electrode was linear with a Nernstian slope of 53.3mV/decade over an NH(4)(+) ion concentration range of 7.60x10(-6) to 1.0x10(-1)M and a detection limit of 3.9x10(-6)M. The response time to achieve a steady potential for NH(4)(+) ions was between 6 and 10s, and the electrode is suitable for use within the pH range of 2.2-8.5. The selectivity relative to alkali, alkaline earth, and transition heavy metal ions is good. The newly developed ionophore showed higher NH(4)(+) selectivity over K(+) ( [Formula: see text] ) and Na(+) ( [Formula: see text] ). The electrode could be used for at least 45 days without considerable alteration in its potential. The electrode also shows a better working concentration range and slope in comparison to other NH(4)(+)-selective electrodes reported in literature.     

蛋白质组末端肽富集策略研究进展

蛋白质的末端不仅是蛋白质合成的起点和终点,更参与并调节蛋白质的各项生理功能。研究蛋白质的末端不仅对于蛋白质的结构和功能注释十分必要,还为揭示蛋白酶的作用机理提供重要信息。该文着重针对近年来蛋白质组末端肽富集策略方面取得的进展进行综述,并对蛋白质末端组学技术在蛋白酶作用底物和位点分析中的应用进行了概述。此外,还对蛋白质末端组学研究的发展前景进行了展望。     

A graphene oxide functionalized with 3-aminophenylboronic acid for the selective enrichment of nucleosides,and their separation by capillary electrophoresis

Microchimica Acta - We show that graphene oxide functionalized with 3-aminophenylboronic acid represents a useful new adsorbent for the selective enrichment of the nucleosides, adenosine,...