Preparative and structural studies of halodimolybdates (II), III. Crystal and molecular structure of bis(4-methylpyridinium)hexaiododiaquo-dimolybdate(II)

The title compound (C₆H₈N)₂Mo₂I₆(H₂O)₂ crystallizes in theP¯1 space group, witha = 8.127(3),b = 8.337(3),c = 10.415(4) Å, = 73.99(2), = 84.35(2), = 73.91(2) ° andZ = 1. The structure was solved by direct methods and refined to the unweighted and weighted residuals of 0.044 and 0.052. The structure is characterized by the eclipsed configuration of the iodide ions and water molecules within Mo₂I₆(H₂O) ₂ ^2– ion and very short Mo-Mo bond distance 2.115(1) Å. Three independent Mo-I distances are 2.784(1), 2.760(2) and 2.797(1) Å. 4-Methylpyridinium ion is planar within 0.02° Å. The compound is isostructural with (C₆H₈N)₂Mo₂Br₆(H₂O)₂.Part II, Breni, J. V., Leban, I., and egedin, P. (1976).Z. Anorg. Allg. Chem. 427, 85.     

4-(2-Methylphenyl)-1,2,3,4,5,6,7,8-octahydroquinazoline-2,5-dione (I) and 4-(4chlorophenyl)-1,2,3,4,5,6,7,8-octahydroquinazoline-2,5-dione (II)

The crystal and molecular structures of the title compounds have been determined by x-ray structure analysis. The compounds (I) and (II) crystallize in space groups P2₁2₁2₁ and 12/a respectively. The structures were solved by direct methods and refined to R = 0.058 and R = 0.046. The saturated pyrimidine-2-one ring in both structures deviates from the planarity. There are two intermolecular hydrogen bonds in (I) and (II). The configuration at C4 in (I) is S.     

Transition metal(II) complexes of a biological buffer. Structural and spectroscopic study on Co(II), Ni(II), Cu(II), Zn(II), and Cd(II) complexes of N-[2-hydroxy-1,1-bis-(hydroxymethyl)ethyl]glycine

The structural and spectroscopic properties of complexes of N-[2-hydroxy-1,1-bis-(hydroxymethyl)ethyl]glycine (thmmg) with Co(II), Ni(II), Cu(II), Zn(II), and Cd(II) were investigated. The complex [Zn(thmmg)₂] crystallizes in the space groupP2₁/n, witha=8.796(2),b=9.050(3),c=9.926(2) Å,=97.35(1)° andZ=2; the copper(II) homolog is isomorphous. The complex [Ni(thmmg)₂]·6H₂O crystallizes in the space groupP2₁/n witha=8.432(8),b=8.495(2),c=15.967(1) Å,=95.57(2)° andZ=2; the cobalt(II) homolog is isomorphous. Ni(II) and Zn(II) complexes show an elongated octahedral coordination arising from two symmetry related amino acid molecules acting as a tridentate chelate through the amino nitrogen, one carboxylate oxygen, and one hydroxyl oxygen; the water molecules in the Ni(II) complex are not involved in metal coordination. The same ligand bonding mode may be suggested also for the Cu(II) and Co(II) complexes, while for Cd(II) only the nitrogen atom and the carboxylate oxygens seem to be involved in metal coordination.     

Crystal structures of the cobalt(III), nickel(II), copper(II), and zinc(II) complexes of 2-thio-6-picoline N-oxide

Structures of the following compounds have been solved: tris(2-thio-6-picoline N-oxide)cobalt(III), [Co(6MOS)₃], orthorhombic, Pca2₁, a = 17.871(3), b = 14.061(2), c = 15.964(2) Å, V = 4011(1) ų, Z = 8, and = 1.193 mm^–1; bis (2-thio-6-picoline N-oxide)nickel(II), [Ni(6MOS)₂], orthorhombic, Pbca, a = 15.602(8), b = 13.606(4), c = 13.348(8) Å, V = 2833(4) ų, Z = 8, and = 1.655 mm^–1; bis(2-thio-6-picoline N-oxide)copper(II), [Cu(6MOS)₂], orthorhombic, Pbca, a = 13.914(5), b = 12.984(5), c = 15.663(6) Å, V = 2830(2) ų, Z = 8, and = 1.836 mm^–1; and bis(2-thio-6-picoline N-oxide)zinc(II), [Zn(6MOS)₂], triclinic, P – 1, a = 7.9737(8), b = 11.7786(9), c = 7.9206(8) Å, = 104.502(7), = 104.495(8), = 93.445(8)°, V = 691.3(1) ų, Z = 2, and = 2.106 mm^–1. The steric effect of the methyl group in the six-position of the N-oxide ring is considered in comparing these structures to complexes of 2-thiopyridine N-oxide.     

Synthesis and X-Ray Crystallographic Analysis of 2-(2, 4-Dimethyl Pyrrolyl) Benzothiazole

Abstract  

Synthesis of 2- (2, 4-dimethyl pyrrolyl) benzothiazole by chemical means and molecular structure by X-ray crystallographic techniques is reported. The compound crystallizes in the orthorhombic crystal system with space group Pbca and unit cell parameters: a = 12.161(9), b = 0.787(1), c = 16.792(2) Ǻ, V = 2202.8(4) Ǻ³ and Z = 8. The final reliability index is 0.073 for 7,959 observed reflections. The benzothiazole and pyrrole rings exist in planar conformations. The dihedral angle between the least-squares planes of both these moieties is 13.31°. There exists an isolated C4–H4···N1 intermolecular interaction, besides two C–H···S and C–H···N intermolecular interactions. The presence of C–H···S and C–H···N intramolecular interactions make the present molecule look like a virtual two-six-membered and three-five-membered ring structure.     

Synthesis,Crystallographic and Spectral Studies of 3-(4-(Phenylamino) Phenylamino)Cyclohex-2-Enone

Abstract  

The title compound, 3-(4-(phenylamino)phenylamino)cyclohex-2-enone, β-enaminone of 1,3-cyclohexanedione and p-amino diphenylamine (C₁₈H₁₈N₂O) was prepared and characterized by ¹H-NMR, ¹³C-NMR, Elemental analysis and IR spectroscopy as well as single crystal X-ray diffraction. These results indicate the predominance of the keto-enol tautomerism. Molecular conformation around the central disubstituted benzene ring is affected by the tautomerism and two steric effects between side molecular groups and mono substituted benzene ring. Electron delocalizations due to these effects have been observed in the molecular structure, the structure being stabilized by some intermolecular hydrogen bonds.     

Crystallographic and spectroscopic studies on ethylenediaminetetraacetic acid (edta) III. Crystal and molecular structure of α-edta and infrared studies on α- and β-edta

-Edta is monoclinic:C2/c,a= 11.812,b = 9.647,c = 12.970 Å, = 113.23 ° andZ = 4. The structure has been determined by direct methods with CuK diffractometer data, and refined by full-matrix least squares toR = 7.2% for 737 observed reflexions. The molecule exists as a zwitter ion in acis conformation, and possesses crystallographic two-fold symmetry. The nitrogen atom is protonated and takes part in hydrogen bonding. -Edta is hydrated, in this specimen, refinement indicated a value of 0.39 H₂O per molecule of edta. A short (2.47 Å) hydrogen bond links oxygen atoms in adjacent molecules. Infrared spectra are reported for both -edta and -edta; the results are discussed in terms of the crystal structures. The formulation of -edta with 0.39 mole H₂O is explained.     

Crystal structure and computational studies of (E)-1-(benzo[b]thiophen-3-yl)-N-(4-ethoxyphenyl)methanimine

Crystallography Reports - The title compound, C17H15NOS, crystallizes in the orthorhombic sp. gr. Pca21. Two molecules in the asymmetric unit have similar structure. Crystal structure contains weak...     

Structural,spectroscopic properties and theoretical studies of (E)-1-(4-Bromophenyl)-3-(2,3,4-trimethoxyphenyl)prop-2-en-1-one as a potential anti-oxidant agent

The new chalcone compound namely (E)-1-(4-Bromophenyl)-3-(2,3,4-trimethoxyphenyl)prop-2-en-1-one (C₁₈H₁₇BrO₄) is crystallized in the monoclinic crystal system of P2₁/c space group. The unit cell dimensions are: a = 8.0753 (10) Å, b = 21.873 (3) Å, c = 9.3362 (12) Å, α = 90°, β = 99.369 (2), γ = 90° and Z = 4. The single crystal was grown using slow evaporation solution growth technique. The newly synthesized compound was characterized by using IR, ¹H- and ¹³C-NMR, UV-Vis and single crystal X-ray diffraction analyses. Quantum chemical method of Density Functional Theory (DFT) with B3LYP/6-311++G(d,p) has been employed to study the structural and spectral properties of the compound. The electronic absorption spectrum was calculated using the time dependent functional theory (TDDFT) method. The most stable conformer of the title chalcone is identified from the computational results. Hirshfeld surface analysis with fingerprint plots has been used as a graphical tool for visualization and understanding of intermolecular interactions. Intermolecular C?H····O interaction observed stabilize the crystal structure, forming an infinite one dimensional column. The effect of this intermolecular interaction in the solid state can be seen in the difference between the experimental and the theoretically optimized geometrical parameters. The crystal is transparent in the entire visible region and absorptive in the UV region. Information about the size, shape, charge density distribution and site of chemical reactivity of the molecule has been obtained by mapping electron potential (MEP). The other molecular properties like charge transfer are explain using Mulliken population analysis. The antioxidant test indicated that the 2,3,4-trimethoxy substitution on the bromide chalcone to be one of the favorable modification to enhance its metal chelating activity.     

Crystal structures of (I) 2-(9,9-dipropylfluorene-2-yl)-9,9- dipropylfluorene and (II) 2-(1,1-dimethylpropyl)-7- {4-[(1,1-dimethylpropyl)-9,9-diethylfluoren-2-yl]phenyl}-9,9-diethylfluorene and (III) 2-(4-ethylphenyl) -7-[7-(ethylphenyl)-9,9-dipropylfluoren-2-yl]-9,9-dipropylfluorene

The crystal structures of the three fluorene related molecules, (I) 2-(9,9-dipropylfluorene-2-yl)-9,9-dipropylfluorene, [Exalite 384, C₃₈H₄₂], (II) 2-(1,1-dimethylpropyl)-7-{4-[(1,1-dimethylpropyl)-9,9-diethylfluoren-2-yl] phenyl}-9,9-diethylfluorene, [Exalite 404, C₅₀ H₅₈], and (III) 2-(4-ethylphenyl)-7-[7-(ethylphenyl)-9,9-dipropylfluoren-2-yl]-9,9-dipropylfluorene, [Exalite 416, C₅₄H₅₈], have been determined. Structural details reveal a novel new bonding arrangement at the C2 atoms of symmetry-related fluorene moieties in all three molecules producing a linear type array with an inversion center connecting adjacent asymmetric units within each molecule. Exalite 384 is monoclinic, space group P2₁/c with a = 9.002(2) Å, b = 16.275(4) Å, c = 10.525(1) Å, = 103.05(1), and V = 1502.1(5) ų with Z = 4, for d _calc = 1.103 g/cm³. Exalite 404 is triclinic, space group P1 with a = 10.383(1) Å, b = 13.404(2) Å, c = 7.7007(9) Å, = 105.296(9), = 104.23(1), = 73.707(9), and V = 974.9(2) ų with Z = 2, for d _calc = 1.141. Exalite 416 is monoclinic, space group P2₁/c with a = 15.99(10) Å, b = 11.178(8) Å, c = 23.766(4) Å, = 104.21(4), and V = 4117(4) ų with Z = 4, for d _calc = 1.141 g/cm³.     

Crystal structures of difluoro[2-(4-methoxyphenyl)-3-oxo-3-phenylpropanalato]boron(III), [BF2(C16H13O3)], and bis[2-(4-methoxyphenyl)-3-oxo-3-phenylpropanalato]copper(II), [Cu(C16H13O3)2]

The crystal structures of difluoro[2-(4-methoxyphenyl)-3-oxo-3-phenylpropanalato]boron(III), [BF₂(C₁₆H₁₃O₃)], and bis[2-(4-methoxyphenyl)-3-oxo-3-phenylpropanalato]copper(II), [Cu(C₁₆H₁₃O₃)₂], have been determined by single-crystal X-ray diffraction methods. The structures were solved by direct methods and electron density calculations and were refined by the full-matrix least-squares method. Difluoro[2-(4-methoxyphenyl)-3-oxo-3-phenylpropanalato]-boron(III) crystallizes as yellow rhombs in the monoclinic space groupP2₁/c witha=11.429(3),b=11.364(4),c=11.412(4) Å,=92.19(2)°,V=1481.0(8) ų andZ=4. A total of 2754 unique reflections were collected. Of these 1342 were considered observed [I>3(I)] leading to a finalR-value of 0.045. Boron is tetrahedrally coordinated to the two fluorine atoms and to two oxygen atoms of the bidentate 2-(4-methoxyphenyl)-3-oxo-3-phenylpropanalato ligand, C₁₆H₁₃O ₃ ^– . Average bond distances: C-C (aromatic) 1.378(10) Å, B-O 1.473(7) Å and B-F 1.343(4) Å. bis[2-(4-Methoxyphenyl)-3-oxo-3-phenylpropanalato]copper(II) crystallizes as dark yellow-green plates in the monoclinic space groupC2/c witha=23.410(7),b=13.856(3),c=8.039(3) Å,=101.79(2)°,V=2553(1) ų andZ=4. Of the unique set of 3076 scanned reflections 2401 hadI>3(I) for whichR became 0.040. Copper is coordinated to four oxygen atoms, two from each of the two bidentate 2-(4-methoxyphenyl)-3-oxo-3-phenylpropanalato ligands, in a distorted square planar manner. The molecule hasC ₂ symmetry. Average bond distances: C-C (aromatic) 1.383(6) Å and Cu-O 1.896(8) Å. The crystals of both compounds consist of monomeric molecular complexes held together by van der Waals forces.     

Syntheses,crystal structures and properties of Cd(II) and Ag(I) complexes based on 2-p-methylphenyl-5-(2-pyridyl)-1,3,4-thiadiazole

Abstract

Complexes of [CdL₂(NO₃)₂]·1.5H₂O and [Ag₂(μ-L)₂(NO₃)₂] were synthesized by the reactions of 2-p-methylphenyl-5-(2-pyridyl)-1,3,4-thiadiazole (L) with Cd(NO₃)₂·4H₂O and AgNO₃, respectively. Their structures were determined by single crystal X-ray diffraction. The photophysical property and thermal stability were characterized by FT???IR, UV???Vis absorption, fluorescence, and thermogravimetric analysis (TGA). Both complexes belong to the triclinic system with space group p???1. The central metal of [CdL₂(NO₃)₂]·1.5H₂O has a distorted octahedral geometry [CdN₄O₂], while two central Ag(I) atoms of [Ag₂(μ-L)₂(NO₃)₂] exhibit distorted tetrahedral geometries [AgN₃O].     

Structure of tetra(n-butyl)ammonium tetraiodo-μ,-μ′-diiododiplatinate(II), [(n-C4H9)4N]2[Pt2I6]

The crystal structure of [(n-C₄H₉)₄N]₂[Pt₂I₆] has been determined from X-ray data measured by counter methods. It crystallizes in the monoclinic space groupP2₁/c (C _2h ^-5 , No. 14) with unit cell constantsa=14.457(4),b=14.036(4),c=23.696(5) Å,=101.02(3)°, andD _c =2.30 g cm^–3 forZ=4. Full-matrix least-squares refinement led to a finalR value of 0.049 for 1786 independent observed reflections. The [Pt₂I₆]^2– anion is planar to within 0.07 Å and exhibits an average Pt-I bridging bond length of 2.559(4) Å and average Pt-I terminal distance of 2.571(7) Å. Of the two independent [(n-C₄H₉)₄N]⁺ cations, one approaches a ¯42m-D _2d conformation, the other an approximate ¯4-S₄ conformation.     

Sorption properties of silica gel with adsorbed copolymers of 4-vinylpyridine and styrene with respect to Cu(II), Pb(II) and Fe(III) ions

Abstract

A number of new organo-mineral composites in different mass ratios of organic and inorganic components were obtained by adsorption on the silica gel surface of 4-vinylpyridine–styrene copolymer. The fact of the copolymer immobilization on the silica gel surface was confirmed by Fourier transform infrared spectroscopy (FTIR) spectroscopy and thermogravimetry combined with mass-spectrometry analysis. Thermogravimetric analysis was employed for estimation of copolymers mass content in the composite obtained. It has been established that all the synthesized composites exhibit sorption activity toward traces of Cu (II), Pb (II) and Fe (III) ions in neutral aqueous medium.     

Influence of complex formation upon inclusion of Mn(II), Co(II), Ni(II), and Cu(II) in ZnC2O4·2H2O

The inclusion of 3d‐impurities Mn(II), Co(II), Ni(II) and Cu(II) in a crystalline precipitate of ZnC₂O₄·2H₂O is investigated. This study is a part of the systematic one deal with the mechanism of inclusion of 3d‐ions in sparingly soluble oxalate systems. The experiments are carried out in bi‐ end multi‐component systems at two different mediums – one with deficiency of oxalate ions, another with excess. The insertion of 3d‐ions upon mass crystallization of ZnC₂O₄·2H₂O does not proceed by a simple ionic substitution. The results show that the inserted amount of impurity depends on some physicochemical characteristics of the neutral monooxalato complexes [MnC₂O₄]^o, [CoC₂O₄]^o, [NiC₂O₄]^o and [CuC₂O₄]^o. Good agreement between included impurity and the concentration of its complex in the solution is established. The stability constant of monooxalato complex affects the impurity inclusion. This effect depends on the medium nature. In the deficiency of oxalate ions the factor determining the inclusion is thermodynamic one – stability of monooxalato complexes. In the excess of oxalate ions inserted amount depends on kinetic factor – the formation rate of these complexes. In the term of that the insertion of Mn(II) is definitely different in the two mediums while that of the Ni (II) does not depend on the medium. The copper shows deviation from overall dependence in the two mediums due to the Jahn‐Teller distortion. Its double decreasing insertion in the excess of oxalate ions is related with stabilization of [Cu(C₂O₄)2]^2‐. The conclusions presume that by varying the background medium and taking in view the ions present in the solution, the amount of inserted impurities can be predicted and controlled. (© 2004 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

5-Pyridine 4-yl-3H-(1,3,4) Oxadiazole-2 Thione Hydrochloride Monohydrate, (I), and 4 [5-Ethylsulfanyl)-(1,3,4) Thiadiazole-2-yl]-Pyridinium Perchlorate, (II)

Abstract  

The title compounds C₇H₈ClN₃O₂S, (I), and C₉H₁₀ClN₃O₄S_2, (II), both crystallize in monoclinic space group P2₁ /c with unit cell parameters (I) a = 7.9402(7), b = 10.6312(9), c = 11.7626(10), ?, β = 99.271(5)°, Z = 4 and (II) a = 5.1439(2), b = 9.0636(4), c = 27.1814 (7), ?, β = 95.116(2)°, Z = 4. In (I) the molecule consists of a 5-pyridine-4-yl group bonded to the carbon atom at the 5 position of (1, 3, 4) oxadiazole-2 thione hydrochloride monohydrate. The angle between the mean planes of the oxadiazole and pyridine rings is 9.6(6)°. Crystal packing in (I) is stabilized by strong N–H···O hydrogen bonds in concert with a solvent water molecule and weak O–H···Cl, O–H···S, N–H···Cl intermolecular interactions. The crystal structure of compound (II) consists of 4 [5-ethylsulfanyl)-(1, 3, 4) thiadiazole-2-yl]-pyridinium perchlorate, (C₉H₁₀N₃S₂)⁺(ClO₄)⁻, cation–anion pairs, containing strong intermolecular N–H···O hydrogen bonds and weak C–H···O and N–H···O intermolecular interactions operating between the ionic species that form a cooperative hydrogen-bonded, infinite chain O–H···O–H···O–H network which generates a sheet motif structure in the unit cell. It is also supported by weak intermolecular Cg···Cg π–π and Cl–O···Cg π-ring interactions which gives additional support to molecular packing stability in the unit cell. Geometry optimized MOPAC AM1 computational calculations on each compound provides support to the structural features in their respective crystal structures.     

Crystal structure oftrans-tetrachlorobis[2-(2-1H-imidazolyl)-1H-imidazolium]cadmium(II), [Cd(H3biim)2Cl4]

The reaction between cadmium(II) chloride and 2,2'-bi-1H-imidazole (H₂biim) in an acidic solution affords [Cd(H₃biim)₂Cl₄] (H₃biim=2-(2-1H-imidazolyl)-1H-imidazolium) in 63% yield. The compound crystallizes in the triclinic space groupP1, wherea=8.072(2),b=8.100(2),c=8.593(2) Å, =75.89(2), =62.94(2), =63.29(1)°,V=446.4(2) ų, andZ=1. The central Cd atom exhibits an octahedral geometry composed of a Cl₄N₂ core. The Cd-N bond distance is 2.392(2) Å. Cd–Cl distances are 2.5919(9) and 2.671(1) Å.