Structure and hydrogen bonding in polyhydrated complexes of guanine

Abstract Molecular structure of complexes of guanine with 12, 13, 16, and 17 water molecules were calculated using B3LYP/6-311G(d,p) level of theory. Interaction with water results in some deformation of geometrical parameters of guanine, which can be described as contribution of zwitter-ionic resonant form into the structure of DNA base. Saturation of water binding sites within guanine creates possibilities for the formation of the N···H–O hydrogen bond where the nitrogen atom of amino group acts as proton acceptor. The NBO analysis of guanine–water interactions reveals that hydrogen bonds involving the N(3) and N(7) atoms of guanine represent a case of mixed N···H–O/π···H–O hydrogen bonds where contribution of π-system into total energy of interaction varies from 3% to 41%. This contribution significantly depends on orientation of the hydrogen atom of water molecule with respect to plane of purine bicycle and influence of neighboring water molecules. Graphical Abstract      

Seven-coordinate rhenium(III) complexes of 1-(2-pyridylazo)-2-naphtholate: X-ray studies,spectroscopic characterization and DFT calculations

The reactions of [ReX₃(MeCN)(PPh₃)₂] (X = Cl or Br) with 1-(2-pyridylazo)-2-naphthol (HPAN) have been examined and the [ReBr(PAN)₂] · 2CHCl₃ (1) and [ReCl(PAN)₂] (2) complexes have been obtained. The both complexes have been structurally and spectroscopically characterized, and compound 1 has been additionally studied by magnetic measurements. The magnetic behavior is characteristic of mononuclear seven-coordinated Re(III) complex with d⁴ low-spin configuration, which gives diamagnetic ground state.     

Thermal N(CN)2-bridging reactions of dicyanamide complexes Ni{N(CN)2}2Ln in solid phase

The stoichiometry of thermal decomposition reactions was studied for the following compounds: Ni{N(CN)₂}_2py2 (I) (py-pyridine), Ni{N(CN)₂}₂(2-Mepy)₂ (II), Ni{N(CN)₂}₂(3-Mepy)₂ (III) and Ni{N(CN)₂}₂(4-Mepy)₃ (IV). In complexes I and II the loss of the volatile heterocyclic ligands occurs in one step while in complexes III and IV in two steps. Magnetic and spectral data indicated pseudooctahedral configuration for all complexes. The course of thermal N(CN)₂-bridging reactions of the complexes studied are discussed. Part XXV in the series Heterogeneous reactions of solid Ni(II) complexes.     

Nickel(II)-azido/thiocyanato complexes of 1-alkyl-2-(naphthylazo)imidazole

[Ni(NaiR)₂(X)₂] (X = N₃ (3, 4) and NCS (5, 6) complexes are synthesized from the reaction of Ni(ClO₄)₂ · 6H₂O with 1-alkyl-2-(naphthyl-α/β-azo)imidazole (α/β-NaiR) and sodium azide (NaN₃) or ammonium thiocyanate (NH₄NCS) (1:2:2 molar ratio) in methanol solution. The complexes are characterized by elemental, spectroscopic and magnetic study. The distorted octahedral structure has been confirmed by single crystal X-ray diffraction study of [Ni(β-NaiEt)₂(NCS)₂] (6b). Cyclic voltammogram exhibits quasireversible oxidation response at 0.3–0.4 V which is corresponding to Ni(III)/Ni(II) couple along with ligand reductions at negative potential to SCE reference electrode.     

Nickel(II)-azido/thiocyanato complexes of 1-alkyl-2-(arylazo) imidazole: single crystal X-ray structure of [Ni(Pai-Me)2(N3)2] (Pai-Me=1-methyl-2(phenylazo)imidazole)

Reaction of Ni(ClO₄)₂ · 6H₂O with 1-alkyl-2-(arylazo)imidazole (RaaiR^/) and sodium azide (NaN₃) or ammonium thiocyanate (NH₄SCN) (1 : 2 : 2 molar ratio) in methanol gives [Ni(RaaiR^/)₂(X)₂] (X=N₃ (3, 4) and SCN (5, 6). All these complexes are characterized by elemental analyses, UV–Vis and IR spectral data, thermal and magnetic moment measurements. The X-ray structure is confirmed by single crystal measurement of [Ni(Pai-Me)₂(N₃)₂] (3a). Cyclic voltammetry exhibits quasireversible response at >0.80 V corresponding to Ni(III)/Ni(II) couple along with ligand reductions at negative potential (<?0.5 V) to SCE reference. The electronic structure, spectral and redox properties are explained by DFT (Gaussian03) calculation.     

Activation of SO2 with [(η5‐C5Me5)2Ln(THF)2] (Ln=Eu,Yb) Leading to Dithionite and Sulfinate Complexes

The reaction of decamethylytterbocene [(η⁵‐C₅Me₅)₂Yb(THF)₂] with SO₂ at low temperature gave two new compounds, namely, the Yb^III dithionite/sulfinate complex [{(η⁵‐C₅Me₅)₂Yb(μ₃,1κ²O^1,3,2κ³O^2,2′,4‐S₂O₄)}₂{(η⁵‐C₅Me₅)Yb(μ,1κO,2κO′‐C₅Me₅SO₂)}₂] ( 1 ) and the Yb^III dithionite complex [{(η⁵‐C₅Me₅)₂Yb}₂(μ,1κ²O^1,3,2κ²O^2,4‐S₂O₄)] ( 2 ). After extraction of 1 , the mixture was heated to give the dinuclear tetrasulfinate complex [{(η⁵‐C₅Me₅)Yb}₂(μ,κO,κO’‐C₅Me₅SO₂)₄] ( 3 a ). In contrast, from the reaction of [(η⁵‐C₅Me₅)₂Eu(THF)₂] with SO₂ only the tetrasulfinate complex [{(η⁵‐C₅Me₅)Eu}₂(μ,κO,κO’‐C₅Me₅SO₂)₄] ( 3 b ) was isolated. Two major reaction pathways were observed: 1) reductive coupling of two SO₂ molecules to form the dithionite anion S₂O₄^2?; and 2) nucleophilic attack of one metallocene C₅Me₅ ligand on the sulfur atom of SO₂. The compounds presented are the first dithionite and sulfinate complexes of the f‐elements.     

Vibrational Properties of [FeH(N2)(depe)2]+ and [FeCl(N2)(depe)2]+]: Dinitrogen Bonding in the Low Activation Limit

The vibrational properties of the two octahedral Fe^II dinitrogen complexes [FeH(N₂)(depe)₂]⁺ ( 1 ) and [FeCl(N₂)(depe)₂]⁺ ( 2 , depe = 1, 2‐bis(diethylphosphino)ethane) are investigated with the help of infrared and Raman spectroscopies. Vibrational data are evaluated with a Quantum Chemistry Assisted Normal Coordinate Analysis (QCA‐NCA; N. Lehnert, F. Tuczek, Inorg. Chem. 1999 , 38, 1659). In agreement with high values found for ν(NN) and the corresponding force constants f(NN), the N₂ ligands in compounds 1 and 2 are non‐activated which corresponds to the observation that N₂ is not protonable in Fe^II systems. Taking into account the short Fe‐N bond lengths, the values of the Fe‐N stretching force constants (2.55mdyn/Å for 1 and 2.58mdyn/Å for 2 ) are found to be compatible with those of other Fe^II low‐spin compounds coordinated to backbonding N‐coordinating ligands. The force fields obtained for the Fe‐N₂ units of 1 and 2 are almost identical although the thermal stability of 1 and 2 with respect to loss of N₂ is different. This indicates that the zero‐point vibrational levels are unaffected by possible ground‐state level crossing processes occuring at larger Fe‐N bond lengths, as observed for 2 (O. Franke, B. E. Wiesler, N. Lehnert, C. Näther, V. Ksenofontov, J. Neuhausen, F. Tuczek, Inorg. Chem. 2002 , 41, 3491).     

Yttrium and lanthanide diphosphanylamides: syntheses and structures of complexes with one [(Ph2P)2N]- ligand in the coordination sphere

Treatment of the recently reported potassium salt [K(thf)(n)][N(PPh(2))(2)] (n=1.25, 1.5) with anhydrous yttrium or lanthanide trichlorides in THF leads after crystallization from THF/n-pentane (1:2) to the monosubstituted diphosphanylamide complexes [LnCl(2)[(Ph(2)P)(2)N](thf)(3)] (Ln=Y, Sm, Er, Yb). The single-crystal X-ray structures of these complexes show that the metal atoms are surrounded by seven ligands in a distorted pentagonal bipyramidal arrangement, in which the chlorine atoms are located in the apical positions. The diphosphanylamide ligand is always eta(2)-coordinated through the nitrogen atom and one phosphorus atom. Further reaction of [SmCl(2)[(Ph(2)P)(2)N](thf)(3)] with K(2)C(8)H(8) or reaction of [LnI(eta(8)-C(8)H(8))(thf)(3)] with [K(thf)(n)][N(PPh(2))(2)] in THF gives the corresponding cyclooctatetraene complexes [Ln[(Ph(2)P)(2)N](eta(8)-C(8)H(8))(thf)(2)] (Ln=La, Sm). The single crystals of these compounds contain enantiomerically pure complexes. Both compounds adopt a four-legged piano-stool conformation in the solid state. The structures of the A and the C enantiomers were established by single-crystal X-ray diffraction. The more soluble bistrimethylsilyl cyclooctatetraene complex [Y[(Ph(2)P)(2)N](eta(8)-1,4-(Me(3)Si)(2)C(8)H(6))(thf)(2)] was obtained by transmetallation of Li(2)[1,4-(Me(3)Si)(2)C(8)H(6)] with anhydrous yttrium trichloride in THF followed by the addition of one equivalent of [K(thf)(n)][N(PPh(2))(2)]. The (89)Y NMR signal of the complex is split up into a triplet, supporting other observations that the phosphorus atoms are chemically equivalent in solution and, thus, dynamic behavior of the ligand in solution can be anticipated.     

Rare-earth tricyanomelaminates [NH(4)]Ln[HC(6)N(9)](2)[H(2)O](7)H(2)O (Ln=La, Ce, Pr, Nd, Sm, Eu, Gd, Tb, Dy): structural investigation, solid-state NMR spectroscopy, and photoluminescence

The rare-earth tricyanomelaminates, [NH(4)]Ln[HC(6)N(9)](2)[H(2)O](7)xH(2)O (LnTCM; Ln=La, Ce, Pr, Nd, Sm, Eu, Gd, Tb, Dy), have been synthesized through ion-exchange reactions. They have been characterized by powder as well as single-crystal X-ray diffraction analysis, vibrational spectroscopy, and solid-state (1)H, (13)C, and (15)N MAS NMR spectroscopy. The X-ray powder pattern common to all nine rare-earth tricyanomelaminates LnTCM (Ln=La, Ce, Pr, Nd, Sm, Eu, Gd, Tb, Dy) indicates that they are isostructural. The single-crystal X-ray diffraction pattern of LnTCM is indicative of non-merohedral twinning. The crystals are triclinic and separation of the twin domains as well as refinement of the structure were successfully carried out in the space group P1 for LaTCM (LaTCM; P1, Z=2, a=7.1014(14), b=13.194(3), c=13.803(3) A, alpha=90.11(3), beta=77.85(3), gamma=87.23(3) degrees , V=1262.8(4) A(3)). In the crystal structure, each Ln(3+) is surrounded by two nitrogen atoms from two crystallographically independent tricyanomelaminate moieties and seven oxygen atoms from crystal water molecules. The positions of all of the hydrogen atoms of the ammonium ions and water molecules could not be located from difference Fourier syntheses. The presence of [NH(4)](+) ions as well as two NH groups belonging to two crystallographically independent monoprotonated tricyanomelaminate moieties has only been confirmed by subjecting LaTCM to solid-state (1)H, (13)C, and (15)N{(1)H} cross-polarization (CP) MAS NMR and advanced CP experiments such as cross-polarization combined with polarization inversion (CPPI). The (1)H 2D double-quantum single-quantum homonuclear correlation (DQ SQ) spectrum and the (15)N{(1)H} 2D CP heteronuclear-correlation (HETCOR) spectrum have revealed the hydrogen-bonded (N--HN) dimer of monoprotonated tricyanomelaminate moieties as well as H-bonding through [NH(4)](+) ions and H(2)O molecules. The structures of the other eight rare-earth tricyanomelaminates (LnTCM; Ln=Ce, Pr, Nd, Sm, Eu, Gd, Tb, Dy) have been refined from X-ray powder diffraction data by the Rietveld method. Photoluminescence studies of [NH(4)]Eu[HC(6)N(9)](2)[H(2)O](7)xH(2)O have revealed orange-red (lambda(max)=615 nm) emission due to the (5)D(0)-(7)F(2) transition, whereas [NH(4)]Tb[HC(6)N(9)](2)[H(2)O](7)xH(2)O has been found to show green emission with a maximum at 545 nm arising from the (5)D(4)-(7)F(5) transition. DTA/TG studies of [NH(4)]Ln[HC(6)N(9)](2)[H(2)O](7)xH(2)O have indicated several phase transitions associated with dehydration of the compounds above 150 degrees C and decomposition above 200 degrees C.     

Transformation of organic molecules on the low-valent [M(Ph(2)PCH(2)CH(2)PPh(2))(2)] moiety derived from trans-[M(N(2))(2)(Ph(2)PCH(2)CH(2)PPh(2))(2)] or related complexes (M = Mo, W)

A zero-valent [M(Ph(2)PCH(2)CH(2)PPh(2))(2)] moiety (M = Mo, W) generated in situ by dissociation of the N(2) ligands in trans-[M(N(2))(2)(Ph(2)PCH(2)CH(2)PPh(2))(2)] can activate pi-accepting organic molecules including isocyanides and nitriles, which undergo the electrophilic attack caused by a strong pi-donation from a zero-valent metal center. Cleavage of a variety of C-X bonds (X = H, C, N, O, P, halogen) also occurs at their electron-rich sites through oxidative addition to form reactive intermediates, which subsequently degradate to yield smaller molecules either bound to or dissociated from the metal center. The mechanism is substantiated unambiguously by isolation of numerous intermediate stages.     

PREPARATION AND PROPERTIES OF DIAZENIDO,HYDRAZIDO(2-), AND HYDRIDO-HYDRAZIDO(2-) COMPLEXES OF TUNGSTEN. X-RAY PHOTOELECTRON SPECTROSCOPY OF DINITROGEN AND HYDRAZIDO(2-) COMPLEXES OF MOLYBDENUM AND TUNGSTEN

Abstract

Reactions of HBr with trans-[W(N₂)₂(dppe)PPh₂Me)₂] (1) (dppe = Ph₂CH₂CH₂PPh₂) result in protonation of coordinated N₂ but no formation of ammonia or hydrazine. The tungsten-containing product depends upon the reaction conditions: (i) in MeOH, the product formed is [WBr(NNH₂) (dppe)(PPh₂Me)₂]HBr₂ (2) which converts to the hydride, [WBr₂(H)(NNH₂(dppe)(PPh₂Me)](Br(3), with loss of phosphine in THF or CH₂Cl₂, (ii) in THF or CH₂Cl₂, the hydride (3) is formed directly. Reaction of 2 with Na₂CO₃ in MeOH results in the loss of HBr and the formation of the diazenido complex [WBr(NNH)(dppe)(PPh₂Me)₂] which reacts further with Na₂CO₃ in benzene under N₂ to lose HBr and form a mixture of 1 and trans-[W(N₂)(dppe)₂]. The reaction of 1 with aqueous HF forms [WF(NNH₂)(dppe)(PPh₂Me)₂]BF₄. The X-ray photoelectron spectra of trans-[M(N₂)₂ (dppe)₂], [MBr(NNH₂)(dppe)₂Br (M = Mo, W), [WCl(NNH₂)(dppe)₂]Cl, [WCl(N)(dppe)₂]Cl and [WCl(NH) (dppe)₂] are reported. In all of these complexes, nitrogen is in a highly reduced form.     

Di- and tetranuclear heterometallic CuII-LnIII complexes (Ln = Gd and Dy): Synthesis, structure and magnetic properties

Four 3d-4f heterometallic complexes, [CuⅡ LnⅢ (bpt) 2 (NO 3 ) 3 (MeOH)] (Ln = Gd, 1; Dy, 2; bptH = 3,5-bis(pyrid-2-yl)-1,2,4- triazole), [CuⅡ 2 LnⅢ 2 (μ-OH) 2 (bpt) 4 Cl 4 (H 2 O) 2 ]·6H 2 O (Ln = Gd, 3; Dy, 4), have been synthesized under solvothermal conditions. X-ray structural analyses reveal that 1 and 2 are isostructural while 3 and 4 are isostructural. In each complex, the copper and gadolinium or dysprosium ions are linked by two triazolate bridges and form a CuⅡ -LnⅢ dinuclear unit. The intramolecular Cu-Ln distances are 4.542, 4.525, 4.545 and 4.538 for 1, 2, 3 and 4, respectively. Two dinuclear CuLn units are bridged by two OH- groups into the zig-zag tetranuclear {CuⅡ 2 LnⅢ 2 } structures with the Ln(Ⅲ) Ln(Ⅲ) distances of 3.742 and 3.684 for 3 and 4, respectively. Magnetic studies show that the antiferromagnetic CuⅡ-LnⅢ interactions occur in 1 (J CuGd = 0.21 cm-1 ) and 2. The antiferromagnetic interaction occurs in complex 3 with J CuGd = 0.82 cm-1 and J GdGd = 0.065 cm-1 , while dominant ferromagnetic interaction occurs in complex 4.     

Structure,biological and electrochemical studies of transition metal complexes from N,S,N′ donor ligand 8-(2-pyridinylmethylthio)quinoline

The semirigid tridentate 8-(2-pyridinylmethylthio)quinoline ligand (Q1) is shown to form the structurally characterized transition metal complexes [Cu(Q1)Cl₂] (1), [Co(Q1)(NO₃)₂] (2), [Cd(Q1)(NO₃)₂] (3), [Cd(Q1)I₂] (4). [Cu(Q1)₂](BF₄)₂·(H₂O)₂ (5), [Cu(Q1)₂](ClO₄)₂·(CH₃COCH₃)₂ (6), [Zn(Q1)₂](ClO₄)₂(H₂O)₂ (7), [Cd₂(Q1)₂Br₄] (8), [Ag₂(Q1)₂(ClO₄)₂] (9), and [Ag₂(Q1)₂(NO₃)₂] (10). Four types of structures have been observed: ML-type in complexes 1–4, in which the anions Cl⁻, NO₃⁻ or I⁻ also participate in the coordination; ML₂⁻ type in complexes 5–7 without direct coordination of the anions BF₄⁻ or ClO₄⁻ and with more (Cu²⁺) or less (Zn²⁺) distorted bis-fac coordinated Q1; M₂L₂-type in complex 8, in which two Br⁻ ions act as bridges between two metal ions; and M₂(μ-L)₂-type in complexes 9 and 10, in which the ligand bridges two anion binding and Ag–Ag bonded ions. Depending on electron configuration and size, different coordination patterns are observed with the bonds from the metal ions to N_pyridyl longer or shorter than those to N_quinoline. Typically Q1 acts as a facially coordinating tridentate chelate ligand except for the compounds 9 and 10 with low-coordinate silver(I). Except for 6 and 8, the complexes exhibit distinct constraining effects against both G(+) and G(-) bacteria. Complexes 1, 3, 4, 5, 7 have considerable antifungal activities and complexes 1, 5, 7, and 10 show selective effects to restrain certain botanic bacteria. Electrochemical studies show quasi-reversible reduction behavior for the copper(II) complexes 1, 5 and 6.     

Thermal decomposition of Y,La and lanthanide benzene-1,2-dioxyacetates in an air atmosphere

The thermal decompositions of Y, La and lanthanide (from Ce(III) to Lu(III) benzene-1,2-dioxyacetates with general formula Ln₂(C₁₀H₈O₆)₃·nH₂O were studied. The hydrated complexes first lose water of crystallization in one or two steps to yield anhydrous compounds or hydrates containing coordination water molecules, and then decompose to the oxides Ln₂O₃, CeO₂, Pr₆O₁₁ and Tb₄O₇ with formation of intermediates, carbonates and oxycarbonates (La, Pr-Eu), oxycarbonates (Y, Tb-Lu) or carbonate (Gd) only. Anhydrous cerium(III) benzene-1,2-dioxyacetate decomposes on heating directly to CeO₂.