Conformational Studies of a Six-Membered Phostone

Abstract

Although 1,3,2-dioxaphosphorinanes generally assume chair conformations,¹ there are examples in which the ring adopts the boat or twist-boat form.¹ Recent studies on the synthesis, stereochemistry, and reactivity of 2-alkoxy-2-oxo-1,2-oxaphosphorinanes (phostones) have revealed both cis and trans isomers of 3-(diphenylhydroxymethyl)-2-ethoxy-2-oxo-1,2-axaphosphorinane² to assume a chair conformation in the solid state. In the present work, the conformational properties of cis and trans-3-methoxycarbonyl-2-methoxy-2-oxo-1,2-oxaphosphorinanes were investigated by X-ray analysis, variable temperature ³¹P, ¹H and ¹H{³¹P} NMR spectroscopy, molecular mechanics, and semiempirical calculations. The X-ray crystal structure of the trans isomer revealed a chair dormation with equatorial phosphoryl and carbomethoxy groups. No changes were observed in the ³¹P NMR spectra of either isomer in the temperature range of 183–333 K. A complete set of vicinal J_HH coupling constants was extracted from the ¹H{³¹P} spectra of each isomer taken at five temperatures over the range of 213–293 K and refined by simulation of the spectra. The best-fit analysis of this data using a generalized Karplus equation³ revealed that the conformation of the trans isomer in solution was close to that found in the solid state. This conformation corresponded to the global energy minimum calculated by both molecular mechanics and PM3 semiempirical method. A substantial contribution from an inverted chair conformation of the cis isomer had to be assumed to achieve a reasonable fit of the coupling constants calculated from the generalized Karplus equation.     

Oxomolybdenum(VI) complexes with glycine bisphenol [O,N,O,O′] ligand: synthesis and catalytic studies

The oxomolybdenum(VI) complex [MoOCl(L)] with a tetradentate glycine bisphenol ligand (H₃L) was prepared by reaction of [MoO₂Cl₂(DMSO)₂] with a ligand precursor in hot toluene. The product was isolated in moderate yield as separable cis and trans isomers along with the third minor component, [MoO₂(HL)]. The solid-state structure of trans-[MoOCl(L)] was determined by X-ray diffraction. The ligand has tetradentate coordination through three oxygens and one nitrogen, which is located trans to the terminal oxo whereas the sixth coordination site is occupied by a chloride. Both cis and trans isomers of [MoOCl(L)] are active catalysts for epoxidation of cis-cyclooctene and sulfoxidation of tolyl methyl sulfide. The cis isomer gave higher activity in epoxidation and sulfoxidation reactions at room temperature than the trans isomer but they performed identically at 50?°C.     

Molecular and crystal structure of <Emphasis Type="Italic">trans</Emphasis> and <Emphasis Type="Italic">cis</Emphasis> isomers of 3-cyano-4-[2-(4-methoxyphenyl)vinyl]-6,6-dimethyl-5,6-dihydro-2H-pyran

Monocrystals of the trans and cis isomers of 3-cyano-4-[2-(4-methoxyphenyl)vinyl]-6,6-dimethyl-5,6-dihydro-2H-pyran have been obtained and an X-ray structural analysis of them has been carried out. Both compounds have a molecular structure corresponding to symmetry group C₁. The heterocyclic ring is in a distorted envelope conformation. The crystals of the trans isomer are rhombic and have a fir-tree type of packing. The crystal packing of the cis isomer is formed by pairs of molecules, each of which consists of only one enantiomer. *Dedicated to deeply respected Professor Hank van der Plas in connection with his jubilee. Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 4, pp. 535-540, April, 2009.     

Photomodulation of the Conformation of Cyclic Peptides with Azobenzene Moieties in the Peptide Backbone

The cis ⇌ trans photoisomerization of the azobenzene building block 4-(4-aminophenylazo)benzoic acid incorporated in a cyclic peptide (see scheme) facilitated a two-state transition of the peptide chain from a rigid constrained conformation in the trans isomer into the largely free conformational space of the cis isomer.     

Guest‐Triggered Supramolecular Isomerism in a Pillared‐Layer Structure with Unusual Isomers of Paddle‐Wheel Secondary Building Units by Reversible Single‐Crystal‐to‐Single‐Crystal Transformation

Solvothermal reaction of Zn(NO₃)₂ ? 4 H₂O, 1,4‐bis[2‐(4‐pyridyl)ethenyl]benzene (bpeb) and 4,4′‐oxybisbenzoic acid (H₂obc) in the presence of dimethylacetamide (DMA) as one of the solvents yielded a threefold interpenetrated pillared‐layer porous coordination polymer with pcu topology, [Zn₂(bpeb)(obc)₂] ? 5 H₂O ( 1 ), which comprised an unusual isomer of the well‐known paddle‐wheel building block and the trans–trans–trans isomer of the bpeb pillar ligand. When dimethylformamide (DMF) was used instead of DMA, a supramolecular isomer [Zn₂(bpeb)(obc)₂] ? 2 DMF ? H₂O ( 2 ), with the trans–cis–trans isomer of the bpeb ligand with a slightly different variation of the paddle‐wheel repeating unit, was isolated. In MeOH, single crystals of 2 were transformed by solvent exchange in a single‐crystal‐to‐single‐crystal (SCSC) manner to yield [Zn₂(bpeb)(obc)₂] ? 2 H₂O ( 3 ), which is a polymorph of 1 . SCSC conversion of 3 to 2 was achieved by soaking 3 in DMF. Compounds 1 and 2 as well as 2 and 3 are supramolecular isomers.     

Polyimidines: A new class of polymers. III. A comparison of isomers of polypyromellitimidines

The cis (3,3,5,5-), trans (3,3,7,7-), oxo, and thio analogs of tetraphenylpyromellitide were polymerized with 1, 6-hexane diamine, p-phenylene diamine, and p,p'-diaminodiphenyl ether under various conditions. A comparison was then made of reactivity of the isomers and of the properties of the polymers. In general the thio monomers were more soluble and reactive than the oxo. They also gave more thermally stable polymers. The cis isomers of the monomers were more soluble than the trans, but the trans were more reactive. The least stable of the 12 polymers prepared was that from the cis–oxo monomer and 1,6-hexane diamine. It gave a 10% weight loss at 300°C in air and 340°C in nitrogen by TGA. The most stable polymer was from the reaction of the cis–thio pyromellitide with p,p'-diaminodiphenyl ether, which showed 10% weight losses by TGA at 560 and 650°C in air and nitrogen, respectively. The polymers were stable in hot dilute hydrochloric acid and sodium hydroxide. They were all soluble in chloroform, dimethylformamide, and sulfuric acid. Polymers that contained sulfur were also soluble in carbon tetrachloride, benzene, xylene, and toluene. Brittle films could be cast from solution or melt-pressed.     

Mechanism of cyclopolymerization. Conformational analysis of cis-1,3-diisocyanatocyclohexane

In 1,3-disubstitued cyclohexanes, in general, the diaxial conformation of the cis isomer is, energetically, the least favored conformation. An interspacial electronic interaction in the ground state of a cis-1,3-disubstituted cyclohexane would be expected to increase the proportion of this conformer in the equilibrium mixture. Such an interaction would provide an energetically favorable pathway for cyclopolymerization. From nuclear magnetic resonance studies on cis-and trans-1,3-diisocyanatocyclohexane the conformational equilibrium in the cis isomer was determined. It is shown that cis-1,3-diisocyanatocyclohexane exists in the diequatorial conformation; this is taken as evidence that a ground-state interaction between isocyanato groups in this monomer, which readily cyclopolymerizes, is not a significant factor in the cyclopolymerization mechanism. The value of the free energy barrier, ΔG?, for trans-1,3-diisocyanatocyclohexane was calculated as 11.1 kcal/mole.     

The conformation of t-butyl 2-methoxy-5, 6-dihydro-2 H-pyran-6-carboxylates and 6,6′- disubstituted 2-methoxy-5,6-dihydro-2H-pyran derivatives on the basis of 1H and 13 C NMR spectra

The ¹H and ¹³C NMR spectra of trans- and cis-tert-butyl 2-methoxy-5,6-dihydro-2H-pyran-6-carboxylates (1 and 2) and 6,6′-disubstituted 2-methoxy-5,6-dihydro-2H-pyrans (3-7) have been recorded. HH and CH coupling constants are discussed in terms of the ¹H₆?⁶H₁ conformational equilibrium. It has been found that 1 occurs exclusively in the ¹H₆ conformation, whereas its cis isomer, 2, exists in an equilibrium of both half-chair forms. 6,6′-Disubstituted 2-methoxy-5,6-dihydro-2H-pyrans 3-6 display spectral and conformational behaviour similar to that of 1, whereas 7 resembles 2 in this respect.     

Geometrical isomerism and 13C spectra of the β-substituted Enones R1?C(1)O?C(2)HC(3)H?R2

The ¹³C chemical shifts of the unsaturated carbons were measured in 31 cis and trans pairs of β-substituted enones R₁? C(1)O? C(2)H?C(3)H? R₂. In these polarized ethylenes the chemical shifts of the olefinic carbons are simply related by the equation δ_c=δ_t+A. The steric and electronic effects introduced by the R₁ and R₂ substituents influence the chemical shifts of C-2 and C-3 in both isomers. It is shown that the sign and magnitude of the intercept A mainly reflect the π-charge electronic density changes which arise in the cis isomer and are transmitted via the π-framework. The effect of the steric interaction on the chemical shift of C-3 in the cis isomers is postulated to be related to the symmetry of the substituents. Therefore, the differential shielding of C-3 is indicative of the conformational structure of the cis molecule.     

An Eclipsed C(sp3)-CH3 Bond in a Crystalline Hydrated Tricyclic Orthoamide: Evidence for C?H…︁O hydrogen bonds

Accurate, low-temperature (81 K) X-ray analyses have been made for two crystalline modifications of the tricyclic orthoamide 1b : a cubic trihydrate in space group Pa3 (Z = 8), where the molecule has crystallographic threefold rotation symmetry, and an anhydrous monoclinic form in space group P2₁/c (Z = 8) where two symmetry-independent molecules have different configurations, one ail-trans. (as in the cubic trihydrate), the other cis, cis, trans. In the cubic trihydrate, each orthoamide molecule is attached to a triad of H₂o molecules by OH…?N H-bonds. A remarkable feature of this structure is the nearly eclipsed conformation about the central C-CH₃ bond. In the anhydrous crystal, both types of molecule have the normal staggered orientation of their Me groups. The reversal of the Me orientation in the trihydrate is attributed to C? H…?O H-bonding, which must be much stronger and more directionally specific than has been previously assumed.     

Preparation and properties of isomeric polyphenylacetylenes

Polyphenylacetylenes were prepared using ferric acetylacetonate and (i-Bu)₂AlH, RhCl[(C₆H₅)₃P]₃ and thermal initiation. Color, infrared spectra, softening temperatures, ultraviolet fluorescence, solubility, and crystallinity are described. A method is presented for assigning to these three macromolecular species predominantly cis, trans, and cis–trans copolymer structures, respectively. The dominantly cis polymer is believed to form in a transoid conformation which can easily be transformed to a more helical arrangement which exhibits a degree of crystallinity. Pyridine promotes the isomerization of cis to trans structure. The rhodium phosphine is thought to effect chain growth by repeated additions of the acetylenic C? H of monomer across a terminal triple bond. Phenylacetylene thus behaves as a bifunctional molecule in this system. Color, polymer conformation, and crystallinity appear to be strongly interrelated.     

Crystal Structure Analysis of a trans,trans-Cyclodeca-1, 6-diene Derivative

An X-ray crystal structure analysis of the higher melting diastereoisomer of 2,7-dibromo-3,8-dimethoxy-trans,trans-cyclodeca-1,6-diene (Monoclinic; a = 5.76, b = 10.43, c = 11.32 Å, β = 94.04°; space group P2₁/n; Z = 2) has confirmed the NMR. assignment of the molecular conformation and the trans configuration of the methoxy groups. The trans,trans-cyclodeca-1,6-diene ring adopts a centrosymmetric crown conformation with a C? C?C? C torsion angle of 162°.     

Ab initio static and molecular dynamics study of 4-styrylpyridine.

We report an in‐depth theoretical study of 4‐styrylpyridine in its singlet S₀ ground state. The geometries and the relative stabilities of the trans and cis isomers were investigated within density functional theory (DFT) as well as within Hartree–Fock (HF), second‐order Møller–Plesset (MP2), and coupled cluster (CC) theories. The DFT calculations were performed using the B3LYP and PBE functionals, with basis sets of different qualities, and gave results that are very consistent with each other. The molecular structure is thus predicted to be planar at the energy minimum, which is associated with the trans conformation, and to become markedly twisted at the minimum of higher energy, which is associated with the cis conformation. The results of the calculations performed with the post‐HF methods approach those obtained with the DFT methods, provided that the level of treatment of the electronic correlation is high enough and that sufficiently flexible basis sets are used. Calculations carried out within DFT also allowed the determination of the geometry and the energy of the molecule at the biradicaloid transition state associated with the thermal cis?trans isomerization and at the transition states associated with the enantiomerization of the cis isomer and with the rotations of the pyridinyl and phenyl groups in the trans and cis isomers. Car–Parrinello molecular dynamics simulations were also performed at 50, 150, and 300 K using the PBE functional. The studies allowed us to evidence the highly flexible nature of the molecule in both conformations. In particular, the trans isomer was found to exist mainly in a nonplanar form at finite temperatures, while the rotation of the pyridinyl ring in the cis isomer was incidentally observed to take place within ≈1 ps during the simulation carried out at 150 K on this isomer.     

K2[Mo2O4(C2O4)2(H2O)2]·3H2O

The crystal and molecular structure of dipotassium di‐μ‐oxo‐bis[aqua(oxalato‐O¹,O²)oxomolybdenum(III)] trihydrate, K₂­[Mo₂O₄(C₂O₄)₂(H₂O)₂]·3H₂O, has been determined from X‐ray diffraction data. In the dimeric anion, which has approximate twofold symmetry, each Mo atom is in a distorted octahedral coordination, being bonded to one terminal oxo‐O atom, two bridging O atoms, two O atoms from the oxalato ligand and one from the water mol­ecule. Bond lengths trans to the multiple‐bonded terminal oxo ligand are larger than those in the cis position, confirming the trans influence as a generally valid rule.     

Chiral Lithiated Allylic α‐Sulfonyl Carbanions: Experimental and Computational Study of Their Structure,Configurational Stability,and Enantioselective Synthesis

X‐ray crystal structure analysis of the lithiated allylic α‐sulfonyl carbanions [CH₂?CHC(Me)SO₂Ph]Li ? diglyme, [cC₆H₈SO₂tBu]Li ? PMDETA and [cC₇H₁₀SO₂tBu]Li ? PMDETA showed dimeric and monomeric CIPs, having nearly planar anionic C atoms, only O?Li bonds, almost planar allylic units with strong C?C bond length alternation and the s‐trans conformation around C1?C2. They adopt a C1?S conformation, which is similar to the one generally found for alkyl and aryl substituted α‐sulfonyl carbanions. Cryoscopy of [EtCH?CHC(Et)SO₂tBu]Li in THF at 164 K revealed an equilibrium between monomers and dimers in a ratio of 83:17, which is similar to the one found by low temperature NMR spectroscopy. According to NMR spectroscopy the lone‐pair orbital at C1 strongly interacts with the C?C double bond. Low temperature ⁶Li,¹H NOE experiments of [EtCH?CHC(Et)SO₂tBu]Li in THF point to an equilibrium between monomeric CIPs having only O?Li bonds and CIPs having both O?Li and C1?Li bonds. Ab initio calculation of [MeCH?CHC(Me)SO₂Me]Li ? (Me₂O)₂ gave three isomeric CIPs having the s‐trans conformation and three isomeric CIPs having the s‐cis conformation around the C1?C2 bond. All s‐trans isomers are more stable than the s‐cis isomers. At all levels of theory the s‐trans isomer having O?Li and C1?Li bonds is the most stable one followed by the isomer which has two O?Li bonds. The allylic unit of the C,O,Li isomer shows strong bond length alternation and the C1 atom is in contrast to the O,Li isomer significantly pyramidalized. According to NBO analysis of the s‐trans and s‐cis isomers, the interaction of the lone pair at C1 with the π* orbital of the CC double bond is energetically much more favorable than that with the “empty” orbitals at the Li atom. The C1?S and C1?C2 conformations are determined by the stereoelectronic effects n_C–σ_SR* interaction and allylic conjugation. ¹H DNMR spectroscopy of racemic [EtCH?CHC(Et)SO₂tBu]Li, [iPrCH?CHC(iPr)SO₂tBu]Li and [EtCH?C(Me)C(Et)SO₂tBu]Li in [D₈]THF gave estimated barriers of enantiomerization of ΔG^≠=13.2 kcal mol^?1 (270 K), 14.2 kcal mol^?1 (291 K) and 14.2 kcal mol^?1 (295 K), respectively. Deprotonation of sulfone (R)‐EtCH?CHCH(Et)SO₂tBu (94 % ee) with nBuLi in THF at ?105 °C occurred with a calculated enantioselectivity of 93 % ee and gave carbanion (M)‐[EtCH?CHC(Et)SO₂tBu]Li, the deuteration and alkylation of which with CF₃CO₂D and MeOCH₂I, respectively, proceeded with high enantioselectivities. Time‐dependent deuteration of the enantioenriched carbanion (M)‐[EtCH?CHC(Et)SO₂tBu]Li in THF gave a racemization barrier of ΔG^≠=12.5 kcal mol^?1 (168 K), which translates to a calculated half‐time of racemization of t_1/2=12 min at ?105 °C.     

Ring opening of pyridines: the pseudo‐cis and pseudo‐trans isomers of tetra‐n‐butylammonium 4‐nitro‐5‐oxo‐2‐pentenenitrilate

The reaction of 2‐chloro‐5‐nitropyridine with two equivalents of base produces the title carbanion as an intermediate in a ring‐opening/ring‐closing reaction. The crystal structures of the tetra‐n‐butylammonium salts of the intermediates, C₁₆H₃₆N⁺·C₅H₃N₂O₃⁻, revealed that pseudo‐cis and pseudo‐trans isomers are possible. One crystal structure displayed a mixture of the two isomers with approximately 90% pseudo‐cis geometry and confirms the structure predicted by the S_N(ANRORC) mechanism. The pseudo‐cis intermediate undergoes a slow isomerization over a period of months to the pseudo‐trans isomer, which does not have the appropriate geometry for the subsequent ring‐closing reaction. The structure of the pure pseudo‐trans isomer is also reported. In both isomers, the negative charge is highly delocalized, but relatively small differences in C—C bond distances indicate a system of conjugated double bonds with the nitro group bearing the negative charge. The packing of the two unit cells is very similar and largely determined by the interactions between the planar carbanion and the bulky tetrahedral cation.     

Conformation et spectrométrie de R.M.N.: II

The four isomeric 3-dimethylamino-trans-2-decalols-1,1,4,4-d₄ have been synthesised. Examination of PMR spectra of these compounds allows us to confirm the ‘flattened-chair’ conformation for the cis N(CH₃)₂^a OH^e isomer, whereas the remaining three conserve the double chair conformation. The same type of flattening is also observed in the case of the diaxial quaternary ammonium salt and is even more marked in the cis N(CH₃)₃^a OH^e isomer resulting in a ‘twist-chair’ conformation.     

Cationic polymerization of α,β-disubstituted olefins. XV. Stereospecific polymerization of butenyl ethers by cationic catalysts

Methyl, ethyl, and isopropyl butenyl ethers, CH₃CH₂CH?CHOR, were polymerized with homogeneous catalysts at ?78°C. Toluene, methylene chloride, and nitroethane were used as solvents, and BF₃O(C₂H₅)₂ and SnCl₄·CCl₃CO₂H were used as catalysts. The stereoregularity of the polymers were compared by x-ray diagrams and infrared absorption ratios. The stereoregularity of polymers increased with increasing content of the trans isomer in the monomer and with increasing polarity of the solvent. In the polymerization of methyl and ethyl butenyl ethers, crystalline polymers were obtained from both the trans and cis isomers. The crystalline polymer prepared from the trans isomer and that from the cis isomer had the same steric structure. This behavior is quite different from that observed in the polymerization of propenyl ethers. It is concluded that the bulkiness of the group on the olefinic β-carbon plays an important role in the stereospecific polymerization of α,β-disubstituted olefins.     

Differentiation of the isomeric 1,2-cyclopentanediols by ion-molecule reactions in a triple-quadrupole mass spectrometer

Collisionally activated decompositions and ion-molecule reactions in a triple-quadrupole mass spectrometer are used to distinguish between cis- and trans-1,2-cyclopentanediol isomers. For ion kinetic energies varying from 5 eV to 15 eV (laboratory frame of reference), qualitative differences in the daughter ion spectra of [MH]⁺ are seen when N₂ is employed as an inert collision gas. The cis ?1,2-cyclopentanediol isomer favors H₂O elimination to give predominantly [MH- H₂O]⁺. In the trans isomer, where H₂O elimination is less likely to occur, the rearrangement ion [HOCH₂CHOH]⁺ exists in significantly greater abundance. Ion-molecule reactions with NH₃ under single-collision conditions and low ion kinetic energies can provide thermochemical as well as stereochemical information. For trans ?1,2-cyclopentanediol, the formation of [NH₄]⁺ by proton transfer is an exothermic reaction with the maximum product ion intensity at ion kinetic energies approaching 0 eV. The ammonium adduct ion [M + NH₄]⁺ is of greater intensity for the trans isomer. In the proton transfer reaction with the cis isomer, the formation of [NH₄]⁺ is an endothermic process with a definite translational energy onset. From this measured threshold ion kinetic energy, the proton affinity of cis ?1,2-cyclopentanedioi was estimated to be 886 ± 10 kJ mol^?1.