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1.
Template-directed synthesis and dynamic covalent chemistry were implemented to achieve quantitative one-pot syntheses of homochiral helical cavities inside aromatic foldamers. One-handed helical receptors P- 1 , M- 1 , P- 2 and M- 2 were assembled from their precursors in the presence of appropriate templates (d - and l -tartaric acid, and d - and l -sorbitol, respectively) via three sequential steps in one pot: imine-linked chain elongation, template-induced folding and [4+2] cycloaddition between helical turns. These helical receptors were proven to enantioselectively bind chiral guests used as the templates, and the differences between the association constants of enantiomeric guests were up to more than two orders of magnitude. The structures and binding modes of the receptors were fully characterized by single-crystal X-ray crystallography and 1H NMR spectroscopy.  相似文献   

2.
The interaction of the self-assembled trinuclear ruthenium bowl 1 3+, that displays three other accessible oxidation states, with oxo-anions is investigated. Using a combination of NMR and electrochemical experimental data, estimates of the binding affinities of 1 4+, 1 5+, and 1 6+ for both halide and oxo-anions were derived. This analysis revealed that, across the range of oxidation states of the host, both high anion binding affinities (>109 M−1 for specific guests bound to 1 6+) and high selectivities (a range of >107 M−1) were observed. As the crystal structure of binding of the hexafluorophosphate anion revealed that the host has two potential binding sites (named the α and β pockets), the host-guest properties of both putative binding sites of the bowl, in all of its four oxidation states, were investigated through detailed quantum-based computational studies. These studies revealed that, due to the interplay of ion-ion interactions, charge-assisted hydrogen-bonding and anion-π interactions, binding to the α pocket is generally preferred, except for the case of the relatively large and lipophilic hexafluorophosphate anionic guest and the host in the highest oxidation states, where the β pocket becomes relatively favourable. This analysis confirms that host-guest interactions involving structurally complex supramolecular architectures are driven by a combination of non-covalent interactions and, even in the case of charged binding pairs, simple ion-ion interactions alone cannot accurately define these recognition processes.  相似文献   

3.
A novel helical peptide containing β-(3-pyirdyl)-l-alanine (Pal) and l-glutamic acid (Glu) residues has been designed and successfully prepared as a model ligand of metalloenzyme active sites. The helical peptide, Boc-Leu-Aib-Glu-Leu-Leu-Pal-Aib-Leu-OEt (1) (Boc = tert-butoxycarbonyl, Aib = 2-aminoisobutylic acid) yields fine crystals as an acetnitrile solvate. The metal ion binding affinities of 1 were tested for CoCl2 using UV/vis, CD, Raman, and 1H NMR spectroscopies. The non-linear fitting calculations have revealed the 1:1 complex for CoCl2 with the binding constant 3.6 (±0.7) × 102 M−1.  相似文献   

4.
The conformational preferences of oligopeptides of an ϵ-amino acid (2-((1R,3S)-3-(aminomethyl)cyclopentyl)acetic acid, Amc5a) with a cyclopentane substituent in the Cβ−Cγ−Cδ sequence of the backbone were investigated using DFT methods in chloroform and water. The most preferred conformation of Amc5a oligomers (dimer to hexamer) was the H16 helical structure both in chloroform and water. Four residues were found to be sufficient to induce a substantial H16 helix population in solution. The Amc5a hexamer adopted a stable left-handed (M)-2.316 helical conformation with a rise of 4.8 Å per turn. The hexamer of Ampa (an analogue of Amc5a with replacing cyclopentane by pyrrolidine) adopted the right-handed mixed (P)-2.918/16 helical conformation in chloroform and the (M)-2.416 helical conformation in water. Therefore, hexamers of ϵ-amino acid residues exhibited different preferences of helical structures depending on the substituents in peptide backbone and the solvent polarity as well as the chain length.  相似文献   

5.
Guest‐binding affinities of water‐soluble cyclophane heptadecamer (1) and pentamer (2) with immobilized guests such as 1‐pyrenylmethylamine (PMA) and 2‐(1‐ naphthyl)ethylamine (NEA) were investigated by surface plasmon resonance (SPR) measurements. As a typical example, the binding constants (K) for 1 and 2 with the immobilized PMA as a guest were evaluated to be 2.5 × 107 and 2.7 × 106 M?1, respectively, and were much larger than that of a monocyclic reference cyclophane (K, 2.5 × 104 M?1). Interestingly, in the complexation of 1 and 2 with the immobilized guests, more favorable association and dissociation rate constant values (ka and kd, respectively) were observed in comparison with those for the monocyclic cyclophane, reflecting multivalent effects in macrocycles. The multivalent effects in macrocycles as well as molecular recognition abilities of the cyclophane oligomers were confirmed even when the guest molecules were immobilized on SPR sensor chip surfaces. Copyright © 2009 John Wiley & Sons, Ltd.  相似文献   

6.
A new anthracene-based macrocyclic host (H) was designed and synthesized. H has a molecular box-type structure with a flexible cavity. It exhibits highly strong binding affinities towards selected cationic model guests, butyl viologen (BV), dibutylammonium (DBA), and octyltrimethylammonium (OTMA). For example, the association constant of H and BV is up to (2.2?±?0.3)?×?107?M?1; it is interesting to observe host-guest charge-transfer band (and color change) and fluorescence quenching of H’s anthracene unit due to the formation of inclusion complex.  相似文献   

7.
Accurately distinguishing between enantiomeric molecules is a fundamental challenge in the field of chemistry. However, there is still significant room for improvement in both the enantiomeric selectivity (KR(S)/KS(R)) and binding strength of most reported macrocyclic chiral receptors to meet the demands of practical application scenarios. Herein, we synthesized a water-soluble conjugated tubular host—namely, corral[4]BINOL—using a chiral 1,1′-bi-2-naphthol (BINOL) derivative as the repeating unit. The conjugated chiral backbone endows corral[4]BINOL with good fluorescent emission (QY=34 % ) and circularly polarized luminescence (|glum| up to 1.4×10−3) in water. Notably, corral[4]BINOL exhibits high recognition affinity up to 8.6×1010 M−1 towards achiral guests in water, and manifested excellent enantioselectivity up to 18.7 towards chiral substrates, both of which represent the highest values observed among chiral macrocycles in aqueous solution. The ultrastrong binding strength, outstanding enantioselectivity, and facile accessibility, together with the superior fluorescent and chiroptical properties, endow corral[4]BINOL with great potential for a wide range of applications.  相似文献   

8.
A systematical evaluation of association constants between halide, phosphate, and carboxylate anions with N‐methylformamide ( 1 ) and the related bidentate receptors 2 – 6 (derived from, e.g., phthalic acid or ethylenediamine) in CDCl3 as solvent yielded increments of complexation free‐energy ΔΔG for each single H‐bond, which varied like, e.g., 5.1 kJ/mol (for Cl), 4.0 kJ/mol (for Br), 4.0 kJ/mol (for I) (with values taken from Tables 1 and 2), in line with expected H‐bond strength. The observed complexation induced NH‐NMR shift (CIS) values also showed a regular change, in the case of 1 , e.g., from 5.0 to 2.8 to 2.1 ppm (Table 1), with about half of these values with the bidentate ligands (Tables 2 and 3). Tridentate hosts led to a substantial binding increase, if strain‐free convergence of all NH donor functions towards the anion was possible. The tris[urea] ligand 10 yielded, even in the polar solvent DMSO, with Cl a ΔG of −21.5 kJ/mol and with Br of −10⋅5 kJ/mol, whereas with I, no association was detectable. The results demonstrated that small, inexpensive, and conformationally mobile host compounds can exhibit high affinities as well as descrimination with anions, as much as more preorganized receptors do which require multistep synthesis. The corresponding adamantyl derivative 13 allowed measurements also in CDCl3, with K=4.3⋅104 M −1 for chloride (Table 7). Complexes with nucleotide anions were again particularly strong with the tridentate urea‐based ligands, the latter being optimal ligands for chloride complexation. For the association of 10 with AMP2− and GMP2−in (D6)DMSO, the association constants were 3⋅104 M −1 (Table 8) and almost the same as with Cl. In the case of the urea derivatives 17 , 18 , and 21 , containing only one phenyl or pyrenyl substituent, however, the ΔG values decreased in the order A>C>T>G (e.g. −13.6, −11.6, −7.6, −10.5 kJ/mol in the case of 17 , resp.; Table 8). In H2O, the pyrenyl‐substituted urea derivatives allow measurements with fluorescence, and, unexpectedly, show only smaller nucleobase discrimination, with constants around 3⋅103 M −1.  相似文献   

9.
Ladders of relative alkali ion affinities of crown ethers and acyclic analogs were constructed by using the kinetic method. The adducts consisting of two different ethers bound by an alkali metal ion, (M1 + Cat + M2)+, were formed by using fast atom bombardment ionization to desorb the crown ethers and alkali metal ions, then collisionally activated to induce dissociation to (M1 + Cat)+ and (M2 + Cat)+ ions. Based on the relative abundances of the cationized ethers formed, orders of relative alkali ion affinities were assigned. The crown ethers showed higher affinities for specific sizes of metal ions, and this was attributed in part to the optimal spatial fit concept. Size selectivities were more pronounced for the smaller alkali metal ions such as Li+, Na+, and K+ than the larger ions such as Cs+ and Rb+. In general, the cyclic ethers exhibited greater alkali metal ion affinities than the corresponding acyclic analogs, although these effects were less dramatic as the size of the alkali metal ion increased.  相似文献   

10.
The recognition of either homomeric or heteromeric pairs of pentoses in an aromatic oligoamide double helical foldamer capsule was evidenced by circular dichroism (CD), NMR spectroscopy, and X‐ray crystallography. The cavity of the host was predicted to be large enough to accommodate simultaneously two xylose molecules and to form a 1:2 complex (one container, two saccharides). Solution and solid‐state data revealed the selective recognition of the α‐4C1‐d ‐xylopyranose tautomer, which is bound at two identical sites in the foldamer cavity. A step further was achieved by sequestering a heteromeric pair of pentoses, that is, one molecule of α‐4C1‐d ‐xylopyranose and one molecule of β‐1C4‐d ‐arabinopyranose despite the symmetrical nature of the host and despite the similarity of the guests. Subtle induced‐fit and allosteric effects are responsible for the outstanding selectivities observed.  相似文献   

11.
Caffeine (1,3,7-trimethylxanthine) is a chemical substance associated with everyday human life. In order to recognize caffeine in water, six water-soluble acyclic phane compounds composed of three aromatic rings were examined as artificial receptors. 1H NMR titration experiments revealed that 6,6′-[1,3-phenylenebis(carbonylimino)]bis-1,3-naphthalenedisulfonate had the highest binding ability for caffeine, with a binding constant (Kb) of 127±5 M−1 at 300 K. While this phane compound also formed a complex with theophylline (1,3-dimethylxanthine) at around half the value of the binding constant for caffeine (Kb=64±4 M−1), it showed weak or little complexation for adenosine, guanosine, inosine, and their 5′-phosphates (sodium salts of adenylic acid, guanylic acid, and inosinic acid).  相似文献   

12.
An experimental and computational study on the conformational preference of 1,n′-disubstituted ferrocenoyl amino acids and dipeptides is presented. Only l-amino acids were used for the synthesis of Fe[C5H4-CO-Met-Met-OMe]2 (4), but according to the X-ray structure a 4:1 mixture of l,d,M,d,l and l,d,M,l,l isomers is obtained (l describes amino acid chirality and M the helical chirality of the ferrocene core). This result is in agreement with IR and CD solution phase data and can be explained with a racemization by 1 M NaOH during the synthesis. In order to determine the relative stabilities of the different conformations, DFT calculations on model compounds Fe[C5H4-CO-Gly-NH2]2 (5) and Fe[C5H4-CO-Ala-OMe]2 (6) were performed using the B3LYP/LanL2DZ method with ECPs on the heavy atoms. Conformers 5A-5C with different hydrogen bond patterns have significantly different stabilities with a stabilization by about 30 kJ mol−1 per hydrogen bond. The “Herrick conformation” 5A with two hydrogen bonds is the most stable in the gas phase, in accordance with the solution and solid phase data. In contrast, only small energetic differences (less than 10 kJ mol−1) were calculated for conformers l,P,l-6A, l,P,d-6A and d,P,d-6A, which differ only in amino acid chirality.  相似文献   

13.
In this work, we report a mechanism by which stereoisomeric and twisted capsules P/M- 1 direct their dynamic chirality in the presence of haloalkane guests. The capsule comprises a static, but twisted, cage that is linked to a dynamic tris(2-pyridylmethyl)amine (TPA) lid at its top. From the results of experimental (NMR spectroscopy and X-ray crystallography) and computational (DFT) studies, the TPA lid was shown to assume clockwise (+) and counterclockwise (−) folds with diastereomeric (but racemic) capsules M- 1 (+) and M- 1 (−) interconverting at a rapid rate (ΔG189K=9.1 kcal mol−1). The relative stability of the capsules was found to be a function of guest(s) residing in their interior (243/262 Å3) with small CH2Cl2 (61 Å3) yielding roughly equal population of diastereomeric inclusion complexes. Larger guests, such as CCl4 (89 Å3) and CBr4 (108 Å3), however, formed M- 1 (−)⊂CX4 at the expense of M- 1 (+)⊂CX4 in circa 3:1 ratio. To account for the observation, theory (DFT:M06-2X/6–31+G*) and experiments (1H NMR spectroscopy) were used to deduce that CX4 guests become localized inside the twisted cage of the capsule by forming a C−X⋅⋅⋅π halogen bond [Nc=d/(rH+rX)=0.91–0.92] with the benzene “floor” while encountering electrostatic repulsions with closer naphthalimide boundaries. At last, the TPA lid used its central methylene hydrogens to establish, within the M- 1 (−)⊂CX4, three stabilizing C−H⋅⋅⋅X−C interactions with the guest. The same C−H⋅⋅⋅X−C interactions, however, became weaker (or possibly vanished) after the conformational reorganization of the lid and the formation of less stable M- 1 (+)⊂CX4 complex. On individual basis, C−H⋅⋅⋅X−C intermolecular contacts are weak and hardly detectable in the solution phase. In the case of capsule P/M- 1 , however, these contacts were multivalent and altogether strong enough to direct the host's dynamic chirality.  相似文献   

14.
A laser photolysis–long path laser absorption (LP‐LPLA) experiment has been used to determine the rate constants for H‐atom abstraction reactions of the dichloride radical anion (Cl2) in aqueous solution. From direct measurements of the decay of Cl2 in the presence of different reactants at pH = 4 and I = 0.1 M the following rate constants at T = 298 K were derived: methanol, (5.1 ± 0.3)·104 M−1 s−1; ethanol, (1.2 ± 0.2)·105 M−1 s−1; 1‐propanol, (1.01 ± 0.07)·105 M−1 s−1; 2‐propanol, (1.9 ± 0.3)·105 M−1 s−1; tert.‐butanol, (2.6 ± 0.5)·104 M−1 s−1; formaldehyde, (3.6 ± 0.5)·104 M−1 s−1; diethylether, (4.0 ± 0.2)·105 M−1 s−1; methyl‐tert.‐butylether, (7 ± 1)·104 M−1 s−1; tetrahydrofuran, (4.8 ± 0.6)·105 M−1 s−1; acetone, (1.41 ± 0.09)·103 M−1 s−1. For the reactions of Cl2 with formic acid and acetic acid rate constants of (8.0 ± 1.4)·104 M−1 s−1 (pH = 0, I = 1.1 M and T = 298 K) and (1.5 ± 0.8) · 103 M−1 s−1 (pH = 0.42, I = 0.48 M and T = 298 K), respectively, were derived. A correlation between the rate constants at T = 298 K for all oxygenated hydrocarbons and the bond dissociation energy (BDE) of the weakest C‐H‐bond of log k2nd = (32.9 ± 8.9) − (0.073 ± 0.022)·BDE/kJ mol−1 is derived. From temperature‐dependent measurements the following Arrhenius expressions were derived: k (Cl2 + HCOOH) = (2.00 ± 0.05)·1010·exp(−(4500 ± 200) K/T) M−1 s−1, Ea = (37 ± 2) kJ mol−1 k (Cl2 + CH3COOH) = (2.7 ± 0.5)·1010·exp(−(4900 ± 1300) K/T) M−1 s−1, Ea = (41 ± 11) kJ mol−1 k (Cl2 + CH3OH) = (5.1 ± 0.9)·1012·exp(−(5500 ± 1500) K/T) M−1 s−1, Ea = (46 ± 13) kJ mol−1 k (Cl2 + CH2(OH)2) = (7.9 ± 0.7)·1010·exp(−(4400 ± 700) K/T) M−1 s−1, Ea = (36 ± 5) kJ mol−1 Finally, in measurements at different ionic strengths (I) a decrease of the rate constant with increasing I has been observed in the reactions of Cl2 with methanol and hydrated formaldehyde. © 1999 John Wiley & Sons, Inc. Int J Chem Kinet 31: 169–181, 1999  相似文献   

15.
A water-soluble coordination cage was obtained by reaction of Pd(NO3)2 with a 1,3-di(pyridin-3-yl)benzene ligand featuring a short PEG chain. The cavity of the metal-organic cage contains one nitrate anion, which is readily replaced by chloride. The apparent association constant for chloride binding in buffered aqueous solution is Ka=1.8(±0.1)×105 M−1. This value is significantly higher than what has been reported for other macrocyclic chloride receptors. The heavier halides Br and I compete with binding or self-assembly, but the receptor displays very good selectivity over common anions such as phosphate, acetate, carbonate, and sulfate. A further increase of the chloride binding affinity by a factor of 3 was achieved using a fluorinated dipyridyl ligand.  相似文献   

16.
In this work, we examine the strength of various types of individual hydrogen bond (HB) in mixed methanol-water MnWm, (n+m=2 to 7) clusters, with an aim to understand the relative order of their strength, using our recently proposed molecular tailoring-based approach (MTA). Among all the types of HB, it is observed that the OM−H…OW HBs are the strongest (6.9 to 12.4 kcal mol−1). The next ones are OM−H…OM HBs (6.5 to 11.6 kcal mol−1). The OW−H…OW (0.2 to 10.9 kcal mol−1) and OW−H…OM HBs (0.3 to 10.3 kcal mol−1) are the weakest ones. This energetic ordering of HBs is seen to be different from the respective HB energies in the dimer i. e., OM−H…OM (5.0 to 6.0 kcal mol−1)>OW−H…OM (1.5 to 6.0 kcal mol−1)>OM−H…OW (3.8 to 5.6 kcal mol−1)>OW−H…OW (1.2 to 5.0 kcal mol−1). The plausible reason for the difference in the HB energy ordering may be attributed to the increase or decrease in HB strengths due to the formation of cooperative or anti-cooperative HB networks. For instance, the cooperativity contribution towards the different types of HB follows: OM−H…OW (2.4 to 8.6 kcal mol−1)>OM−H…OM (1.3 to 6.3 kcal mol−1)>OW−H…OW (−1.0 to 6.5 kcal mol−1)>OW−H…OM (−1.2 to 5.3 kcal mol−1). This ordering of cooperativity contribution is similar to the HB energy ordering obtained by the MTA-based method. It is emphasized here that, the interplay between the cooperative and anti-cooperative contributions are indispensable for the correct energetic ordering of these HBs.  相似文献   

17.
Chiral nanosized confinements play a major role for enantioselective recognition and reaction control in biological systems. Supramolecular self‐assembly gives access to artificial mimics with tunable sizes and properties. Herein, a new family of [Pd2L4] coordination cages based on a chiral [6]helicene backbone is introduced. A racemic mixture of the bis‐monodentate pyridyl ligand L1 selectively assembles with PdII cations under chiral self‐discrimination to an achiral meso cage, cis‐[Pd2 L1P 2 L1M 2]. Enantiopure L1 forms homochiral cages [Pd2 L1P/M 4]. A longer derivative L2 forms chiral cages [Pd2 L2P/M 4] with larger cavities, which bind optical isomers of chiral guests with different affinities. Owing to its distinct chiroptical properties, this cage can distinguish non‐chiral guests of different lengths, as they were found to squeeze or elongate the cavity under modulation of the helical pitch of the helicenes. The CD spectroscopic results were supported by ion mobility mass spectrometry.  相似文献   

18.
In participation of the fifth statistical assessment of modeling of proteins and ligands (SAMPL5), the strength of association of six guests (38) to two hosts (1 and 2) were measured by 1H NMR and ITC. Each host possessed a unique and well-defined binding pocket, whilst the wide array of amphiphilic guests possessed binding moieties that included: a terminal alkyne, nitro-arene, alkyl halide and cyano-arene groups. Solubilizing head groups for the guests included both positively charged trimethylammonium and negatively charged carboxylate functionality. Measured association constants (K a ) covered five orders of magnitude, ranging from 56 M?1 for guest 6 binding with host 2 up to 7.43 × 106 M?1 for guest 6 binding to host 1.  相似文献   

19.
Four new substituted amino acid ligands, N-(3-hydroxybenzyl)-glycine acid (HL1), N-(3-hydroxybenzyl)-alanine acid (HL2), N-(3-hydroxybenzyl)-phenylalanine acid (HL3), and N-(3-hydroxybenzyl)-leucine acid (HL4), were synthesized and characterized on the basis of 1H NMR, IR, ESI-MS, and elemental analyses. The crystal structures of their copper(II) complexes [Cu(L1)2]·2H2O (1), [Cu(L2)2(H2O)] (2), [Cu(L3)2(CH3OH)] (3), and [Cu(L4)2(H2O)]·H2O (4) were determined by X-ray diffraction analysis. The ligands coordinate with copper(II) through secondary amine and carboxylate in all complexes. In 2, 3, and 4, additional water or methanol coordinates, completing a distorted tetragonal pyramidal coordination geometry around copper. Fluorescence titration spectra, electronic absorption titration spectra, and EB displacement indicate that all the complexes bind to CT-DNA. Intrinsic binding constants of the copper(II) complexes with CT-DNA are 1.32?×?106?M?1, 4.32?×?105?M?1, 5.00?×?105?M?1, and 5.70?×?104?M?1 for 1, 2, 3, and 4, respectively. Antioxidant activities of the compounds have been investigated by spectrophotometric measurements. The results show that the Cu(II) complexes have similar superoxide dismutase activity to that of native Cu, Zn-SOD.  相似文献   

20.
We report the linear extension from M1 to M2 to anthracene walled M3 which adopts a helical conformation (X-ray) to avoid unfavorable interactions between sidewalls. M3 is water soluble (=30 mm ) and displays enhanced optical properties (ϵ=1.28×105 m −1 cm−1, λmax=370 nm) relative to M2 . The binding properties of M3 toward guests 1 – 29 were examined by 1H NMR and ITC. The M3 ⋅guest complexes are stronger than the analogous complexes of M2 and M1 . The enhanced binding of M3 toward neuromuscular blockers 25 , 27 – 29 suggests that M3 holds significant promise as an in vivo reversal agent. The changes in fluorescence observed for M3 ⋅guest complexes are a function of the relative orientation of the anthracene sidewalls, guest concentration, Ka, and guest electronics which rendered M3 a superb component of a fluorescence sensing array. The work establishes M3 as a next generation sequestering agent and a versatile component of fluorescence sensors.  相似文献   

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