Gas-phase ion/ion reactions of transition metal complex cations with multiply charged oligodeoxynucleotide anions

Multiply deprotonated hexadeoxyadenylate anions, (A6-nH)(n-), where n = 3-5, have been subjected to reaction with a range of divalent transition-metal complex cations in the gas phase. The cations studied included the bis- and tris-1,10-phenanthroline complexes of CuII, FeII, and CoII, as well as the tris-1,10-phenanthroline complex of RuII. In addition, the hexadeoxyadenylate anions were subjected to reaction with the singly charged FeIII and CoIIIN,N'-ethylenebis(salicylideneiminato) complexes. The major competing reaction channels are electron-transfer from the oligodeoxynucleotide anion to the cation, the formation of a complex between the anion and cation, and the incorporation of the transition-metal into the oligodeoxynucleotide. The latter process proceeds via the anion/cation complex and involves displacement of the ligand(s) in the transition-metal complex by the oligodeoxynucleotide. Competition between the various reaction channels is governed by the identity of the transition-metal cation, the coordination environment of the metal complex, and the oligodeoxynucleotide charge state. In the case of the divalent metal phenanthroline complexes, competition between electron-transfer and metal ion incorporation is particularly sensitive to the coordination number of the reagent metal complexes. Both electron-transfer and metal ion incorporation occur to significant extents with the bis-phenanthroline ions, whereas the tris-phenanthroline ions react predominantly by metal ion incorporation. To our knowledge this work reports the first observations of the gas-phase incorporation of multivalent transition-metal cations into oligodeoxynucleotide anions and represents a means for the selective incorporation of transition-metal counter-ions into gaseous oligodeoxynucleotides.     

Probing the intrinsic features and environmental stabilization of multiply charged anions

Multiply charged anions (MCAs) represent exotic, highly energetic species in the gas-phase due to their propensity to undergo unimolecular decay via electron loss or ionic fragmentation. There is considerable fundamental interest in these systems since they display novel potential energy surfaces that are characterized by Coulomb barriers. Over recent years, considerable progress has been made in understanding the factors that affect the stability, decay pathways and reactivity of gas-phase MCAs, mainly as a result of the application of electrospray ionization as a generic technique for transferring solution-phase MCAs into the gas-phase for detailed characterization. We review contemporary work in this field, focusing on the factors that control the intrinsic stability of MCAs, both as isolated gas-phase ions, and on their complexation with solvent molecules and counter-ions. While studies of MCAs are primarily of fundamental interest, several classes of important biological ions are commonly observed as MCAs in the gas-phase (e.g. oligonucleotides, sugars). Recent results for biologically relevant ions are emphasised, since a fundamental understanding of the properties of gas-phase MCAs will be highly valuable for developing further analytical methods to study these important systems.     

Semi-empirical model for the fission of multiply charged metal clusters

A semi-empirical model is proposed to calculate the fission barrier height for large highly-charged simplemetal clusters. The fusion barrier is obtained making use of a bonding potential, and the classical metallic drop model is employed for calculating the heats of fission and evaporation. We have found a good agreement between calculated critical sizes and experimental results for the appearance of charged clusters in mass spectra. Within the same model, we predict the critical numbers for spontaneous fission.     

Gas-phase stability of tetrahedral multiply charged anions: a conceptual and computational DFT study

Multiply charged anions (MCA's) are unstable relative to electron autoejection; however, the repulsive Coulomb barrier (RCB) provides electronic stability. In view of their interest in biological systems, the behavior of isolated AsO(4)(3-), PO(4)(3-), SO(4)(2-), and SeO(4)(2-) in the gas phase and in solution has been studied. To calculate the RCB values, the electrostatic and point charge model-two methods currently used in the literature-are applied, together with a recently introduced Conceptual Density Functional Theory (DFT) based approach. The relative stability of the above-mentioned MCA's is compared. The trends of the RCB are analyzed by including analogous compounds from the second and third row and by passing from dianionic to trianionic systems. Considering the effect of solvent, using the SCI-PCM solvent model, the evolution of the RCB when passing to higher dielectric constants is evaluated. The RCB is related to the properties of the system as polarizability/softness. Both a numerical and a conceptual correlation between the RCB and the global softness is found.     

Theoretical description of the decay of hot charged alkali metal clusters

Critical (appearance) sizes of multiply charged hot (liquid) alkali metal clusters are calculated by equating the rates for neutral monomer and light charged-particle emission. The rate formulas are based on the Weisskopf model with level densities (with appropriate surface corrections) and Coulomb barriers determined from the measured temperature dependence of the specific heat and the Wigner-Seitz radius of the bulk. The time development of temperature and size of large clusters are also calculated by solving rate equations for multiple emission of cluster atoms.     

Counter-ion perturbation of the fragmentation pathways of multiply charged anions: evidence for exit channel complexes on the fragmentation potential energy surfaces

We report the first low-energy collisional excitation measurements and density functional theory calculations to characterize the ground state potential energy surfaces of contact ion-pair complexes that contain multiply charged anions (MCAs). Excitation of K+.Pt(CN)(4) (2-) and K+.Pt(CN)(6) (2-) result in fragmentation products associated with decay of the isolated constituent dianions, revealing that the ground state ion-pair surfaces are dominated by the intrinsic characteristics of the MCA. This observation is important since it indicates that counter-ion complexation only weakly perturbs the electronic structure of an MCA. For K+.Pt(CN)(4) (2-), where the Pt(CN)(4) (2-) dianion decays with production of two ionic fragments, we observe evidence for the existence of a novel exit-channel complex corresponding to a polar KCN salt unit bound to the Pt(CN)(3) (-) anion. The results described provide a basis for understanding the potential energy surfaces and fragmentation characteristics of other ion-pair complexes that involve MCAs.     

Simulation study on dynamics of A- to B-form transition in aqueous DNA solution: Effect of alkali metal counterions

DNA and its conformational transition can be used to design nanometer-scale structures, nano-tweezers and nanomechanical devices. Experiments and molecular simulations have been used to study the concentration effect on the A-DNA→B-DNA conformational transition, but a systematical investigation on counterion effect on the dynamics of this transition has not been reported up to now. In present work, restrained and unrestrained molecular dynamics (MD) simulations have been performed to characterize the stability of DNA conformations and the dynamics of A-DNA→B-DNA transitions in aqueous solutions with different alkali metal counterions. The DNA duplex d(CGCGAATTCGCG)₂, coion Cl^? and counterions Li⁺, Na⁺, K⁺, Rb⁺ and Cs⁺ as well as water molecule were considered using the PARM99 force field in the AMBER8 package. It was found that B-form DNA is more stable than A-form DNA in aqueous electrolyte solutions with different alkali metal counterions. Increasing KCl concentration in solution hinders the A-DNA→B-DNA transition and the transition times for different alkali metal counterions conform to neither the simple sequence related to naked ion size nor to hydrated diameter, but an apparently abnormal sequence of K⁺ < Rb⁺ < Cs⁺ < Na⁺ < Li⁺. This abnormal sequence can be well understood in terms of an electrostatic model based on the effective cation diameters and the modified mean-spherical approximation (MMSA). The present results provide valuable information for the design of DNA-based nanomaterials and nanodevices.     

Triplet-singlet splitting of the alkali metal clusters: Example of the Li6 clusters

The influence of the geometry on the specifics of the electronic structure of Li₆ clusters is studied in detail, since planar and three-dimensional lithium hexamers are found to be of comparable stability. The ab initio CI investigation of the Li₆ isomers yields almost degenerate lowest singlet and triplet states for certain cluster geometries. Simple criteria for the energy gap between the lowest triplet and singlet state are derived, and their applicability is demonstrated.     

Ion-ion reactions in the gas phase: Proton transfer reactions of protonated pyridine with multiply charged oligonucleotide anions

Isolated triply and doubly charged anions of the single-stranded deoxynucleotide 5′-d(AAAA)-3′ were allowed to undergo ion-ion proton transfer reactions with protonated pyridine cations within a quadrupole ion trap mass spectrometer. Sufficiently high ion number densities and spatial overlap of the oppositely charged ion clouds could be achieved to yield readily measurable rates. Three general observations were made: (1) the ion-ion reaction rate constants were estimated to be 10^{? (7 ? 8)} cm³ ion^?1 s^?1; (2) the ion-ion reaction rates were found to be dependent on the reactant ion number density, which could be controlled by both the reactant ion number and the pseudopotential well depth, and (3) very little fragmentation, if any, was observed, as might normally be expected with highly exothermic proton transfer reactions.     

Lead‐enhanced gas‐phase stability of multiply charged EDTA anions: a combined experimental and theoretical study

Besides their fundamental importance, multiply charged anions (MCAs) are considered as promising molecular capacitors for which their intrinsic stabilities are of great significance. Herein, the gas‐phase stabilities of ethylenediaminetetraacetic acid (EDTA) anions (i.e. [EDTA‐nH]^n?, n = 1–4) and their Pb(II) complexes (i.e. [EDTA + Pb‐nH]^(2‐n)?, n = 3, 4) have been investigated using an approach that combines extractive electrospray ionization mass spectrometry (EESI‐MS) measurements, Car–Parrinello molecular dynamics simulations and density functional theory/Tao–Perdew–Staroverov–Scuseria calculations. The EESI‐MS data showed that the doubly charged EDTA anions in the form of [EDTA‐2H]^2? and [EDTA + Pb‐4H]^2? were much more abundantly observed than the singly charged species such as [EDTA‐H]^? and [EDTA + Pb‐3H]^?, respectively. The calculation results indicated that [EDTA‐2H]^2? and [EDTA + Pb‐4H]^2? anions were thermodynamically more stable than the [EDTA‐H]^? and [EDTA + Pb‐3H]^? species in the gas phase, respectively. The [EDTA + Pb‐3H]^? anions preferred five‐coordinated structure, whereas [EDTA + Pb‐4H]^2? anions formed either five‐coordinated or six‐coordinated structures. The calculations further revealed that significant electron clouds drifting from the ligand EDTA to the metal Pb(II) ions and the large distances between the carboxylic groups reduced the Coulomb repulsion among the excess electrons of these MCAs. Our data demonstrated that EESI‐MS combined with theoretic calculations were able to provide a deep insight into the fundamental behavior of stability of MCAs in the gas phase and, thus, might be useful tools for studying MCAs for potential molecular capacitors. Copyright © 2012 John Wiley & Sons, Ltd.     

Defect formation on surfaces bombarded by energetic multiply charged proteins: Implications for the conformation of gas-phase electrosprayed ions

Indirect information on the conformation of highly charged molecular ions may be obtained by monitoring their collisional cross sections and the course of simple gas-phase reactions such as hydrogen-deuterium exchange. In this work, another indirect but more visually oriented approach is explored: electrosprayed protein ions are accelerated toward a highly oriented pyrolytic graphite surface and the resulting single-ion defects are imaged by scanning force and tunneling microscopy. All protein impacts generated shallow hillocks: the shapes depended on the identity and charge state of the incident protein. Lysozyme and myoglobin, both compact, globular proteins in the native state, produced compact, almost circular hillocks. However, hillocks generated by myoglobin that had been denatured in the solution phase were elongated, and the elongation was positively correlated with the charge state of the ion. It appears that structural information about gas-phase multiply charged proteins can be derived from imprints generated by energetic protein impacts on surfaces.     

Influence of delocalization on the stability of dianions: study of a systematic series of dianions with growing electronic localization

The electronic stability of a dianion is influenced by the degree of delocalization of its electrons, but it is generally not possible to separate this influence from other effects. Here, we investigate by theoretical means the sequence of dianions consisting of phen-1,4-ylenbis(ethynide) and seven of its derivatives obtained by hydrogenating the benzene core in several steps. These dianions are structurally similar and mainly differ by the degree of delocalization of their electrons. We present geometries and electron detachment energies computed at a correlated level of theory. The results point to a classification of the eight dianions in three distinct groups of electronic stability. We are able to explain this grouping by a simple resonance structure picture, which demonstrates why the dianions with more delocalized electrons are less stable.     

Simultaneous determination of inorganic and organic anions,alkali, alkaline earth and transition metal cations by capillary electrophoresis with contactless conductometric detection

Simultaneous separation of up to 22 inorganic and organic anions, alkali, alkaline earth and transition metal cations was achieved in less than 3 min in the capillary electrophoresis system with contactless conductometric detector. The sample was injected from both capillary ends (dual opposite end injection) and anionic and cationic species were detected in the center of the separation capillary. The parameters of the separation electrolyte, such as pH, concentration of the electrolyte, concentration of complexing agents and concentration of 18-crown-6 were studied. Best results were achieved with electrolytes consisting of 8 mM L-histidine, 2.8 mM 2-hydroxyisobutyric acid, 0.32 mM 18-crown-6 at pH 4.25 or 9 mM L-histidine, 4.6 mM lactic acid, 0.38 mM 18-crown-6 at pH 4.25. Other electrolytes containing complexing agents such as malic or tartaric acid at various concentrations could also be used. The detection limits achieved for most cations and anions were 7.5 - 62 micro gL(-1) except for Ba2+ (90 micro gL(-1)), Cd 2+, Cr 3+ and F- (125 micro gL(-1)), and fumarate (250 micro gL(-1)). The repeatability of migration times and peak areas was better than 0.4% and 5.9%, respectively. The developed method was applied for analysis of real samples, such as tap, rain, drainage and surface water samples, plant exudates, plant extracts and ore leachates.     

Second-sphere interaction of anions with a weakly binding metal complex host: probing the effect of counteranions

The reaction of [Re(OTf)(CO)5] with N-methylimidazole (MeIm) afforded [Re(CO)3(MeIm)3]OTf (1). The reactions of 1 with KPF6, NaBPh4 and NaBAr'4 (Ar' = 3,5-bis(trifluoromethyl)phenyl) afforded [Re(CO)3(MeIm)3]PF6 (2) [Re(CO)3(MeIm)3]BPh4 (3) and [Re(CO)3(MeIm)3]BAr'4 (4) respectively. An analogous reaction using N-phenylimidazole (PhIm) yielded [Re(CO)3(PhIm)3]BAr'4 (7). These new compounds were characterized by IR and NMR, and the structures of 1 and 2 were determined by X-ray diffraction. Compounds [Re(CO)3(MeIm)3]2[PtCl6] (5), [Re(CO)3(MeIm)3][HSO4] (6), [Re(CO)3(PhIm)3][Br] (8) and [Re(CO)3(PhIm)3][NO3] (9) were crystallized from equimolar mixtures of either 4 or 7 and the tetrabutylammonium salt of the corresponding anion, and their structures were determined by X-ray diffraction. The solution behavior of 1-4, 7 toward several anions was studied spectroscopically, including the quantitative determination of binding constants by 1H NMR. The cationic tris(imidazole)complexes are stable against imidazole-by-anion substitution, and the main hydrogen bonding interactions involve the imidazole NC(H)N groups. The binding constants for compounds 1-4 with several external anions follow the order 1<2<3<4, indicating that the strength of the cationic complex-counteranion interaction follows the order OTf(-) > PF6(-) > BPh4(-) > BAr'4(-).     

Effective modulation of DNA duplex stability by reversible transition metal complex formation in the minor groove

Herein we describe the reversible changing of DNA duplex thermal stability by exploiting transition metal complexation phenomena. A terpyridine ligand was conjugated to the N2'-atoms of 2'-amino-2'-deoxyuridine and its locked counterpart 2'-amino-LNA, and these metal-complexing monomers were incorporated into oligodeoxyribonucleotides. Upon addition of varying amounts of transition metal ions, the thermal stability of DNA duplexes containing these terpyridine-functionalized units in different constitutions was affected to different degrees (DeltaTm values = -15.5 to +49.0 degrees C, relative to the unmodified duplex). The most pronounced effects were observed when two complexing monomers were positioned in opposite strands. Addition of 1 equiv of Ni2+ to such a system induced extraordinary duplex stabilization. Molecular modeling studies suggest, as an explanation for this phenomenon, formation of nickel-mediated interstrand linkages in the minor groove. Addition of an excess of metal ions resulted in largely decreased Tm values. Alternating addition of metal ions and EDTA demonstrated reversibility of metal ion-induced changes in hybridization strength, proving that the described approach provides an efficient method for duplex stability modulation.     

Reactivity of 3d transition metal cations in diethylene glycol solutions. Synthesis of transition metal ferrites with the structure of discrete nanoparticles complexed with long-chain carboxylate anions

Study of the reactivity of 3d transition metal cations in diethylene glycol solutions revealed several key features that made it possible to develop a new method for synthesis of the nanocrystalline transition metal ferrites. The 3-7 nm particles of [MFe2O4]n[O2CR]m, where M = Mn, Fe, Co, Ni, and Zn, ligated on their surface with long-chain carboxylate anions, have been obtained in an isolated yield of 75-90%. The key features are the following. Complexation of the first-row transition metal cations with diethylene glycol at a presence of alkaline hydroxide is sufficient to enable control over the rate of their hydrolysis. The reaction of hydrolysis leads to the formation of metal oxide nanocrystals in colloidal solution. The nanoparticles growth is terminated by an added long-chain carboxylic acid, which binds to their surface and acts as a capping ligand. The isolated nanocrystalline powders are stable against agglomeration and highly soluble in nonpolar organic solvents.     

Reactivity of a heterocyclic As-Se compound with metal salts: syntheses and structures of the first copper complexes and of new alkali metal salts containing As-Se anions

The structures of the new compounds [Cu8(Ph2As2Se2)2(PhAsSe2)2(dppm)4] (1) (dppm = bis-diphenylphosphinomethane), [Cu4(Ph2As2Se2)2(PPh3)4] (2), [{K(18-crown-6)}2(PhAsSe3)] (3), [Na12(PhAsSe3)6(15-crown-5)6] (4) and 1/x[Na2(PhAsSe3)(thf)(H2O)3]x (5) are reported. 2-5 were prepared by reactions of metal thiolates with [(PhAs)2(mu-Se)(mu-Se2)].     

Importance of the counterion in optimization of a borate electrolyte system for analyses of anions in samples with complex matrices performed by capillary zone electrophoresis

Borate buffers are common background electrolytes for analyses of anions in capillary zone electrophoresis. Usually, sodium borate at a given pH is used and this specification seems to be sufficient for a successful analysis. In this paper, we show that free migration of OH(-) may deteriorate the analysis of a typical anionic analysis of clinical samples due to uncontrolled migration of OH(-) throughout the systems of analyzed zones and may damage the stacking of anionic analytes of interest. We have proven that the use of ammonium borate may remedy the situation where the presence of ammonium may selectively stop the free migration of OH(-) ions, slow down their effective mobility and bring their safe behavior resulting in reproducible stacking of clinically important anions. Results of real analyses of human serum samples confirmed the proposed method and proved that substitution of sodium for ammonium in borate buffers offers reliable analyses of clinical samples having chloride as the bulk component. The experimental results given in this paper are supported also by computer simulation, which can not only support the positive results but also show the dynamics of the separation that is otherwise hidden to any detection possibilities.     

Fluxionality in the chemical reactions of transition metal oxide clusters: the role of metal, spin state, and the reactant molecule

The phenomenon of fluxionality in the reactions of transition metal oxide clusters provides many opportunities in various catalytic and industrial processes. To gain a better understanding into the various factors influencing this phenomenon, we have carried out an electronic structure investigation of the fluxionality pathways when W(3)O(6)(-) and Mo(3)O(6)(-) clusters react with hydrogen sulfide and ammonia. The study illustrates how the metal (W vs Mo), different spin states of the anionic metal oxide cluster (doublet vs quartet), and the nature of the nonmetal in the small molecule (O vs S vs N), all affect the fluxionality pathway. The thermodynamically facile fluxionality pathway with H(2)S detaches both the hydrogens from hydrogen sulfide and can thus be very useful in the petrochemical and desulfurization industries. The fluxionality pathway with NH(3) results in interesting metal-bound imines and bridged amines. However, the overall fluxionality process with NH(3) is found to be thermodynamically unfavorable.