Host–guest complexes of mixed glycol-phenanthroline cryptands: prediction of ion selectivity by quantum chemical calculations IV

Abstract Structures and complex-formation energies, calculated with DFT (B3LYP/LANL2DZp) for the cryptands [2.2.phen] and [2.phen.phen] with endohedrally complexed alkali and alkaline earth metal ions, were utilized to predict their ion selectivity. Both cryptands [2.2.phen] and [2.phen.phen] have a cavity size smaller than [2.2.2], [phen.phen.phen] and [bpy.bpy.bpy], and prefer to bind K⁺ and Sr²⁺, whereas [2.2.phen] that is larger than [2.phen.phen], has a preference for Ba²⁺, and [2.phen.phen] favours Na⁺ and Ca²⁺. The cryptand flexibility is mainly attributed to the presence of CH₂–N_SP3···N_SP3–CH₂ groups. Graphical abstract Host–Guest Complexes of mixed Glycol-Phenanthroline Cryptands—Prediction of Ion Selectivity by Quantum Chemical Calculations III Ralph Puchta* and Rudi van Eldik Keywords Cation selectivity Host–guest DFT DFT-studies allow a sensitive analysis of selectivity and cage size. Calculations predict a favourable binding of K⁺, Sr²⁺ and Ba²⁺ by [2.2.phen], and binding of K⁺, Na⁺, Ca²⁺ and Sr²⁺ by [2.phen.phen]. The cryptands fold around the ions by twisting their torsion angles in order to reach the best coordination mode for each cation. For “Prediction of ion selectivity by quantum chemical calculations III” see, R. Puchta, R. van Eldik. Aust. J. Chem. 60, 889–897 (2007).     

Structural investigations on Quinone Methides for understanding their properties in confined media

Encapsulation of 4−[(4′-hydroxy−3′,5′-dimethylphenyl)(aryl)-methylene]−2,6−dimethyl-cyclohexa−2,5−dienones (when aryl=4−hydroxyphenyl 1, 4−methoxyphenyl 2, 2,3,4-trimethoxy phenyl 3) by β-cyclodextrin is studied. The compound 2 is selectively encapsulated by β-cyclodextrin. The result is rationalised by analysing the structural parameters from the crystal structure of 1–3. The visible spectra of the compounds 2 and 3 at pH 9.0 show red shifts on the absorption maxima upon addition of cetyltrimethylammonium bromide (CTAB). For example, addition of a solution of CTAB to aqueous ethanolic solution of 2 at pH 9 causes shift of the absorption at 578–593 nm (Δλ_max=15 nm). The advantage of this observation is taken to use 2 and 3 to determine the critical micelle concentration of CTAB in basic medium.Graphical Abstract Structural investigations on quinone methides for understanding their properties in confined media Rupam J. Sarma, Andrei S. Batsanov, Ritu Kataky, Jubaraj B. Baruah      

Alkali Metal- and Ammonium Picrate Extraction and Complex Forming Capabilities of d-Glucose and d-Mannose-based Lariat Ethers

The alkali metal- and ammonium picrate extracting ability of d-glucose- and d-mannose-based 15-crown-5 ethers and related lariat ethers was investigated in dichloromethane – water system. A heteroatom was waried in the crown ether containing a 4,6-O-benzylidene-α-d-glucopyranoside unit 6, (X=O), 2 (X=S) and 8a (X=NH). Extracting ability of the latter species (8a) was excellent (97–99%) in regard of all cations (Li⁺, Na⁺, K⁺, Rb⁺, Cs⁺ and NH₄⁺) examined, it was not, howewer, selective. Introduction of a side arm on the nitrogen atom of 8a decreased the extracting ability, but increased the selectivity. In this series of compounds (8b–f, 4), 4 with a pyridylethyl substituent allowed the extraction of sodium picrate in 72%. The glucose-based macrocycles 8a, 8e and 8f formed a stronger complex with the cations examined than the mannose-based analogues 9a, 9e and 9f, that can be explained by the all-gauche conformation of the former ones. It was pointed out that in the case of crowns with tertiary amine moieties, the basicity increases the quantity of the picrates extracted. According to complex forming measurements by FAB-MS, the best sodium ion selectivity was achieved by the γ-hydroxypropyl substituted lariat ether (8e). Possible structures of the complexes formed by the two types of monosacharides with sodium cation were evaluated by molecule modelling calculations.     

Synthetic Ionophores. Part 20: Synthesis and Ionophore Character of 2-Aminothiophenol and 1,3-/1,4-Phenylene Based Silver Selective Receptors

Nucleophilic displacements of 1,3- and 1,4-bis(bromomethyl)benzenes with 2-aminothiophenol provide 1,3- and 1,4- bis(2-aminophenylthiomethyl)benzenes 3 and 11 which undergo intermolecular cyclodehydrochlorination with thiodiglycolyl dichloride and isophthaloyl dichloride to give respectively 6, 8 and 12,13. The diamine 3 and its N,N'-dibenzyl derivative 4 with pyridine-2,6-dicarbonyl dichloride give 7 and 5, respectively. The extraction and transport behaviour of these receptors have been determined towards alkali (Li⁺, Na⁺, K⁺),alkaline earth (Mg²⁺, Ca²⁺, Sr²⁺, Ba²⁺), Tl⁺, Ag⁺ and Pb²⁺ picrates.The participation of various ligating sites in binding have been evaluated through ¹³ NMR studies. The acyclic receptors 3, 4 and 11 show higher Ag⁺ selectivity than the cyclic analogs 6 and 12. In the case of acyclic receptor 3 the organisation induced by the 1,3-phenylene spacer and 2-aminophenylthio units and its flexibility generates optimal binding and selectivity towards Ag⁺. However, in cyclicreceptors 3 and 12 though the three thioether unitsare better organised, the inward placement of the NH_amide units restricts the entry of Ag⁺ into the cavity and lowers both the order of binding and selectivity. The lack of binding ability in 7due to an intramolecular NH_amide–-N_py H-bond isrestored in the N-benzyl derivative 5.     

A novel colorimetric sensor for anions recognition based on disubstituted phenylhydrazone

Hydrazone-based receptor containing electron-withdrawing chromogenic substituents 1,10-phenanthroline-2,9-di-carboxaldehydic-(2,4-dinitrophenyl)-hydrazone (1) has been synthesized. The interaction with different anions via hydrogen bonding was demonstrated by UV-Vis absorption spectroscopy to give a purple 1:1 complexes in DMSO, whose association constant decreases in line with the following order of the studied anions (AcO⁻ > F⁻ > H₂PO₄ ⁻ > OH⁻ >>Cl⁻∼Br⁻∼I⁻). As a naked-eyes colorimetric sensor for anions, the study has a latent application importance.      

Identification of Anionic Supramolecular Complexes of Sulfonamide Receptors with Cl<Superscript>−</Superscript>, NO<Stack><Subscript>3</Subscript><Superscript>−</Superscript></Stack>, Br<Superscript>−</Superscript>, and I<Superscript>−</Superscript> by APCI-MS

As part of a mass spectrometric investigation of the binding properties of sulfonamide anion receptors, an atmospheric pressure chemical ionization mass spectrometric (APCI-MS) method involving direct infusion followed by thermal desorption was employed for identification of anionic supramolecular complexes in dichloromethane (CH₂Cl₂). Specifically, the dansylamide derivative of tris(2-aminoethyl)amine (tren) (1), the chiral 1,3-benzenesulfonamide derivatives of (1R,2S)-(+)-cis-1-amino-2-indanol (2), and (R)-(+)-bornylamine, (3), were shown to bind halide and nitrate ions in the presence of (n−Bu)₄N⁺X⁻ (X⁻ = Cl⁻, NO₃⁻, Br⁻, I⁻). Solutions of receptors and anions in CH₂Cl₂ were combined to form the anionic supramolecular complexes, which were subsequently introduced into the mass spectrometer via direct infusion followed by thermal desorption. The anionic supramolecular complexes [M+X]⁻, (M=1–3, X⁻=Cl⁻, NO₃⁻, Br⁻, I⁻) were observed in negative mode APCI-MS along with the deprotonated receptors [M−H]⁻. Full ionization energy of the APCI corona pin (4.5 kV) was necessary for obtaining mass spectra with the best signal-to-noise ratios.     

Gold(III) amine complexes in aqueous alkali solutions

The gold(III) 1,3-diaminopropane complex [Au(1,3-pn)(1,3-pn-H)]Cl₂ has been synthesized. Its dissociation constant has been determined: Au(1,3-pn)₂³⁺ = Au(1,3-pn-H)²⁺ + H⁺, logK _a1 = −7.03 ± 0.05 (I = 0.1 mol/L NaClO₄). Considerable spectral changes are observed for strong alkali solutions (pH 11–14) containing the monoamido forms of the gold(III) ethylenediamine, 1,3-diaminopropane, and diethylenetriamine complexes (Au(en)(en-H)²⁺, Au(1,3-pn)(1,3-pn-H)²⁺, Au(dien-H)OH⁺). These changes are attributed to the formation of the diamido species Au(en-H)₂⁺, Au(1,3-pn-H)₂⁺, and Au(dien-2H)OH⁰. The dissociation constants of the monoamido complexes have been determined: Au(en)(en-H)²⁺ (logK _a2 = −10.9 ± 0.1 at I = 0.001–0.01 mol/L NaCl); Au(1,3-pn)(1,3-pn-H)²⁺ (logK _a2 = −11.3 ± 0.1 at I = 0.1 mol/L NaCl); Au(dien-H)OH⁺ (logK _a2 = −12.4 ± 0.1 at I = 0.1 mol/L NaCl).     

Syntheses and X-ray Crystal Structures of 48-membered Fluoro-Macrocycles and an Investigation of their Coordination Chemistry

The reactions of 2,11-diaza-difluoro-m-[3.3]-cyclophane with 1,3-bis(bromomethyl)-2-fluorobenzene or 2,6-bis(bromomethyl)-pyridine lead in one step to the respective 3 + 3-addition products 4 (yield 11%) and 5 (yield 27%), both of which are 48-membered macrocycles with nine or six potential CF-donor units. The nonafluoro ligand 4 appears not to form stable aggregates with alkali metal ions, while 5 gives a complex with two silver ions, which both are located on the inner periphery of the macrocyclic cavity. The coordination sphere of the two silver ions consists of three nitrogen atoms in a distorted trigonal-planar (Y-shape) environment as evidenced by an X-ray crystal structure. One of the Ag⁺ displays a short contact to an oxygen atom of the CF₃SO₃^– counter ion, leading to a trigonal-pyramidal N₃O-environment.     

Heteroorganic betaines

Photolysis and thermal decomposition of betaines R₃P−CR¹R²−SiR³R⁴−S⁻ (1) follows two main pathways: (a) a Corey—Chaykovsky type reaction with elimination of Ph₃P and generation of silathiirane (2) and (b) a retro-Wittig type reaction accompanied by elimination of R₃P=CR¹R² and generation of silanethione R³R⁴Si=S (3). Highly reactive compounds2 and3 undergo subsequent transformations to give derivatives of tetrahydro-1,4-dithia-2,5-disilin, 1,3-dithia-2,4-disilolane, and phosphonium salts ofsymm-tetraorganodisilthiane dithiolates [Ph₃P⁺CHR¹R²]₂[(R³R⁴SiS⁻)₂S]. The structures of the compounds obtained were established by X-ray diffraction analysis and multinuclear NMR spectroscopy. For part 3, see Ref. 1. The betaines Et₃P⁺CHMeSiMe₂S⁻ and Et₃P⁺CHMeSiPh₂S⁻ with alkyl groups at the phosphorus atom are distinguished by high thermal stability; their spectral characteristics do not change during storage of solutions of these compounds in pyridine-d₅ or metastable solutions in benzene-d₆ for 1–2 years at −20°C in sealed evacuated tubes or on heating (150°C) for 15 h. Published inIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 9, pp. 1594–1603, September, 2000.     

Extraction of some univalent cations into nitrobenzene by using a synergistic mixture of sodium dicarbollylcobaltate and barium ionophore I

From extraction experiments and γ-activity measurements, the exchange extraction constants corresponding to the general equilibrium M⁺ (aq) + 1·Na⁺ (nb) ⇔ 1·M⁺ (nb) + Na⁺ (aq) taking place in the two-phase water–nitrobenzene system (M⁺ = Li⁺, H₃O⁺, NH₄ ⁺ {\rm NH}_{4}^{ + } , Ag⁺, K⁺, Rb⁺, Tl⁺, Cs⁺; 1 = barium ionophore I; aq = aqueous phase, nb = nitrobenzene phase) were determined. Furthermore, the stability constants of the 1·M⁺ complexes in water-saturated nitrobenzene were calculated; they were found to increase in the series of Cs⁺ < Rb⁺ < NH₄ ⁺ {\rm NH}_{4}^{ + } , K⁺ < H₃O⁺ < Na⁺ < Ag⁺, Tl⁺ < Li⁺.     

N–H···O=P hydrogen-bonded dimers as the main structural motif of aminophosphonate diesters

Abstract  

Crystal and molecular structures of three aminophosphonate diesters, diethyl and dibutyl [α-(quinolin-3-ylamino)-N-benzyl]phosphonates (1 and 2) and dibutyl [α-anilino-(quinolin-3-yl)methyl]phosphonate (3) were reported and comparatively discussed. Characteristic structural features for these compounds are strong N–H···O=P hydrogen bonds that connect two organophosphorus molecules in cyclic centrosymmetric dimer. Phosphoryl oxygen forms additional interaction with a C–H donor from the nearby aromatic group. Dimer formation in solution was also confirmed using electrospray ionization mass spectrometry. Mass spectra of six structurally similar aminophosphonate derivatives, 1–3 along with diethyl [α-anilino-(quinolin-3-yl)methyl]phosphonate (4), diethyl and dibutyl [α-anilino-(quinolin-2-yl)methyl]phosphonates (5 and 6) were studied and dimolecular ions [2M + Na]⁺ and [2M + H]⁺ were observed.     

Coordination Chemistry of Lipoic Acid and Related Compounds V [1]. New Heteroditopic Ligands Derived from Monoazacrown Ethers and Lipoic Acid

Summary.  Lipoyl imidazolide reacts with aza-15-crown-5 (1,4,7,10-tetraoxa-13-azacyclopentadecane) or aza-18-crown-6 (1,4,7,10,13-pentaoxa-16-azacyclooctadecane) to afford new N-lipoylated azacrown compounds in good yields. These compounds can be transformed into 1,3-dithiols and amines by reduction with complex hydrides of the disulfide and/or amide group of the lipoyl chain. The new pendant-arm macrocycles react as heteroditopic ligands by forming dithiolate and disulfide complexes with the ‘soft’ metal ions Ni²⁺ and Pd²⁺, respectively, and an amine complex with the ‘hard’ Li⁺ ion. Semiempirical and DFT calculations on the complexation of a lithium ion give a most favourable structure in which the azacrown and two solvent molecules are in contact with the metal but not the pendant arm. Received January 29, 2002; accepted (revised) March 25, 2002     

Coordination polymers with adamantanediacetate bridges: syntheses, structures, and magnetic properties

Abstract  Two new coordination polymers, [CoL(bpp)] _n (1) and [MnL(bipy)] _n ·0.25nH₂L·0.5nH₂O (2) (H₂L = 1,3-adamantanediacetic acid, bpp = 1,3-bis(4-pyridyl)propane, bipy = 4,4′-bipyridine), were synthesized and characterized by single crystal X-ray diffraction, IR spectroscopy, and thermal analysis. Complex 1 is an one-dimensional (1D) chain structure of Co(II) bridged by L²⁻ as well as bpp. Complex 2 consists of a two-dimensional (2D) (3,6)-connected topology layer structure. Variable temperature magnetic susceptibility measurements in the range of 2–300 K reveal the existence of weak antiferromagnetic interactions in two complexes with J = −1.74 cm⁻¹, g = 2.26 for 1 and J = −0.10 cm⁻¹, g = 1.67 for 2. Index abstract  Two mental-organic frameworks, namely [CoL(bpp)] _n (1) and [MnL(bipy)] _n ·0.25nH₂L·0.5nH₂O (2) (H₂L = 1,3-adamantanediacetic acid, bpp = 1,3-bis(4-pyridyl)propane, bipy = 4,4′-bipyridine), have been synthesized based on 1,3-adamantanediacetic acid and N-donor coligand with metal ions Co(II) and Mn(II). The magnetic measurement of the two polymers reveals typical antiferromagnetism exchange. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

(18-Crown-6)potassium tetrachloroferrate(III), dibromodichloroferrate(III), and tetrabromoferrate(III): Synthesis and crystal structures

Three new crystalline complexes are synthesized: [K(18-crown-6)]⁺ · An, where An = [FeCl₄]^?(I), [FeBr₂Cl₂]^? (II), and [FeBr₄]^? (III). The crystals of compounds I–III are cubic and isomorphic, space group Fd $ \bar 3 Three new crystalline complexes are synthesized: [K(18-crown-6)]⁺ · An, where An = [FeCl₄]⁻(I), [FeBr₂Cl₂]⁻ (II), and [FeBr₄]⁻ (III). The crystals of compounds I–III are cubic and isomorphic, space group Fd (Z = 16): a = 20.770(2) ? for I, 20.844(3) ? for II, and 20.878(4) ? for III. Structures I–III are solved by a direct method and refined by the full-matrix least-squares method in the anisotropic approximation to R = 0.047 (I), 0.059 (II), and 0.098 (III) for all 680 (I), 684 (II), and 686 (III) independent reflections. In two tetrahedral anions [Fe(1)X₄]⁻ and [Fe(2)X₄]⁻ in structures I–III, all halogen atoms (X = Cl and Br) are randomly disordered over three close positions relative to the crystallographic axes 3. Structures I–III contain the [K(18-crown-6)]⁺ host-quest complex cation. The K⁺ cation (CN = 8) resides in the cavity of the 18-crown-6 ligand and coordinated by its six O atoms and two disordered halogen X atoms. The coordination polyhedron of the K⁺ cation in complexes I–III is a distorted hexagonal bipyramid. Original Russian Text ? A.N. Chekhlov, 2008, published in Zhurnal Neorganicheskoi Khimii, 2008, Vol. 53, No. 9, pp. 1566–1570.     

Electrospray ionization mass spectrometric detection of self-assembly of a crown ether complex directed by π-stacking interactions

The self-assembly of ligand-metal-ligand sandwich complexes involving a novel quinoxaline-containing crown ether, 1, was studied by electrospray ionization mass spectrometry (ESI-MS). Donor-acceptor π-stacking interactions between the electron-poor quinoxaline group of 1 and electron-rich benzene groups from benzo- or dibenzo-18-crown-6 were found to significantly enhance the formation of mixed-ligand sandwich complexes with a free energy gain of up to 17 kJ/mol relative to sandwich formation involving macrocycles without such aromatic functionalities. The relative intensities of the sandwich complexes were greatest with the alkali metals Na⁺, K⁺, and Rb⁺ as well as with the ammonium ion in equimolar concentrations with the macrocycles. The preferential formation of the mixed-ligand sandwich complexes demonstrated that donor-acceptor π-stacking interactions contribute to the assembly of molecular structures and can be monitored by ESI-MS.     

Synthesis and structure of cobalt complexes [Me3EtN] 2+ [CoI4]2? and [Me3BuN] 2+ [CoI4]2?

Complexes [Me₃EtN]₂⁺[CoI₄]²⁻ (I) and [Me₃EtN]₂⁺[CoI₄]²⁻ (II) were synthesized by reacting trimethylalkylammonium iodide with cobalt(II) iodide in acetone. According to X-ray diffraction data, complexes I and II consist of tetrahedral tetraalkylammonium cations (for I, N-C is 1.481(5)–1.590(8) CNC is 107.3(3)°–111.6(3)°; for II, N-C is 1.485(8)–1.506(10) ? and CNC is 106.9(7)°–111.7(5)°) and [CoI₄]²⁻ anions (for I, Co-I is 2.5951(5)–2.6127(5) ? and ICoI is 104.67(2)°–113.23(2)°; for II, Co-I is 2.5914(8)–2.5943(9) ? and ICoI is 107.05(2)°–114.42(5)°).     

Relative thermodynamic stabilities of the isomeric dihydrofurans and isomeric dihydropyrans. An experimental and DFT study

The relative thermodynamic stabilities of 2,5-dihydrofuran (1) and 2,3-dihydrofuran (2), and of 3,4-dihydro-6H-pyran (3) and 3,4-dihydro-2H-pyran (4), were determined at several temperatures by base-catalyzed equilibration in DMSO solution. For 1 → 2, = –15.4±0.1 kJ mol⁻¹, =–12.6±0.5 kJ mol⁻¹, and =9.5±1.3 J K⁻¹ mol⁻¹ at 298.15 K. The second-law reaction enthalpy agrees with literature data based on calorimetric enthalpies of hydrogenation of the isomeric forms in hexane. For 3 → 4, =–19.3±0.2 kJ mol⁻¹, = –18.9±1.1 kJ mol⁻¹ and =1.1±3.0 J K⁻¹ mol⁻¹ at 298.15 K: the experimental reaction enthalpy is in marked disagreement with literature data based on estimation. On the other hand, both of the experimental reaction enthalpies of the present study are in good agreement with DFT calculations using the B3LYP functional and 6-311+G(2d,p) basis set.     

Excess molar volumes and viscosity deviations of the ternary system of 1-butanol + 2-butanol + 1,3-butanediol at 303.15 K

Abstract  The viscosity and density of ternary mixtures of 1-butanol + 2-butanol + 1,3-butanediol and the binary systems 1-butanol + 2-butanol, 1-butanol + 1,3-butanediol, and 2-butanol + 1,3-butanediol were measured at 303.15 K and atmospheric pressure over the entire range of compositions. Excess molar volumes V ^E and viscosity deviations Δη were obtained from the experimental results for the binary and ternary systems and fitted to Redlich–Kister’s and Cibulka’s equations in terms of mole fractions. The results obtained for the viscosity of liquid mixtures were used to test the semi-empirical relations of Grunberg–Nissan, Hind, and the two-parameter McAllister, Kendall, and Frenkel equations. The experimental data for the ternary system and the constituting binaries are analyzed to discuss the nature and strength of intermolecular interactions in these mixtures. Graphical abstract        

Heteroorganic betaines

The [Ph₃P⁺−CMe₂−SiMe₂−SEt]Br⁻ salt was prepared by the reaction of betaine Ph₃P⁺−CMe₂SiMeR−S⁻ (1a: R=Me) with EtBr. Acetylation of betaine1a or Et₃P⁺−CHMeSiMe₂−S⁻ (2a) afforded 2,2,6-trimethyl-1,3-dioxa-2-silacyclohex-5-ene-4-thione      

Synthesis, in vitro and in vivo behavior of 188Re(I)-tricarbonyl complexes for the future functionalization of biomolecules

Radiolabeling of biologically active molecules with fac-[¹⁸⁸Re(CO)₃(H₂O)₃]⁺ unit has been of primary interest in recent years. Therefore, we herein report ligands L¹−L⁴ (L¹=histidine, L²=nitrilotriacetic acid, L³=2-picolylamine-N,N-diacetic acid, L⁴=bis(2-pyridymethy)amine) that have been evaluated by radiochemical reactions with fac-[¹⁸⁸Re(CO)₃(H₂O)₃]⁺. These reactions yielded the radioactive complexes of fac-[¹⁸⁸Re(CO)₃L] (L = L¹−L⁴, ¹⁸⁸Re tricarbonyl complexes 1–4), which were identified by HPLC. Complexes 1–4, with log P _o/w values ranging from −2.23 to 2.18, were obtained with yields of ≥95% using ligand concentrations within 10⁻⁶–10⁻⁴M range. Thus, specific activities of 220 GBq/μmol could be achieved. Challenge studies with cysteine and histidine revealed high stability for all of these radioactive complexes, and biodistribution studies in mice indicated a fast rate of blood clearance and high rate of total radioactivity excretion occurring primarily through the renal-urinary pathway. In summary, the ligands L¹–L⁴ are potent chelators for the future functionalization of biomolecules labeling with fac-[¹⁸⁸Re(CO)₃(H₂O)₃]⁺.