N-甲基甲酰胺与醇的氢键相互作用

The hydrogen bonding interactions between N-methylformamide and primary, secondary, and tertiary alcohols have been studied using the FT1R spectroscopic method. The most likely association complex between alcohol and N-methylformamide is the 1:1 stoichiometric complex formed between the hydroxyl group of alcohol and the carbonyl group of N-methylformamide. The formation constant of the 1:1 complexes has been calculated using the Nash method. It appears that the primary alcohols have larger formation constant compared with the secondary and tertiary alcohols. The results showed that the proton-donating ability of the alcohols decreased in the order: primary＞secondary＞tertiary, and that the association constant increased with the increase in carbon chain of the alkyl group of alcohols.     

N-甲基甲酰胺与醇的氢键相互作用

Amides are used as synthetic reagents and as starting mate- rials for the preparation of insecticides and pharmaceuticals products[1]. Alcohols are industrially and scientifically important organic compounds, and their physical and chemical properties are…     

木犀草素与胞嘧啶相互作用的理论研究

采用密度泛函理论中的B3LYP方法,在6-31＋G＊基组水平上对木犀草素、胞嘧啶、木犀草素-胞嘧啶复合物进行结构优化和振动频率分析,得到了12种稳定复合物.并应用分子中的原子理论（AIM）分析、自然键轨道（NBO）理论分析得到复合物氢键性质和特征.通过基组重叠误差（BSSE）校正后的相互作用能、成键临界点电荷密度、二阶...     

尿素及硫脲与羰基化合物间的氢键相互作用

利用量子化学二级微扰理论方法对尿素及硫脲衍生物与羰基化合物之间的氢键复合物进行了研究, 在自然键轨道分析基础上进一步揭示了氢键本质并研究了取代基效应. 结果表明, 羰基化合物中供电子基和共轭基, 尿素及硫脲中的吸电子基和共轭基均有利于氢键的形成. 结合尿素与硫脲的催化反应过程, 讨论了氢键复合物两种可能的顺反异构并分析比较了顺反式构象异构体的稳定能大小.     

氢键和供体－受体相互作用驱动的酰肼异体二聚体组装

A new series of hydrogen bonding-driven heterodimers have been self-assembled in chloroform from hydrazide-based monomers. Additional intermolecular donor-acceptor interaction between the electron-rich bis（p-phenylene）-34-crown-10 unit and the electron-deficient naphthalene diimide unit has been utilized to increase the stability of the dimmers, and pronounced cooperativity of the two discrete non-covalent forces to stabilize the dimer has been revealed by the quantitative ^1H （2D） NMR and UV-Vis experiments.     

氢键准则在DMSO水溶液中应用的评价

利用分子动力学模拟方法, 分别采用几何准则和能量准则分析了不同浓度下的二甲基亚砜(DMSO)水溶液的氢键统计和动力学等特性. 结果显示, 两种氢键准则可以很好地反映出溶液的氢键性质随浓度的变化趋势. 通过分析比较发现, 由于几何准则不能有效地排除具有弱对势能的分子对, 因此其统计的氢键数量要大于能量准则的结果.此外, 能量准则对于分子间相对取向的区分存在不足, 进而引起氢键寿命的计算结果偏大.因此,为使氢键分析更加准确, 本文建议使用几何-能量混合型氢键准则.     

槲皮素与腺嘌呤氢键作用的最佳位点

本文优化得到了16个由槲皮素与腺嘌呤形成的氢键复合物的稳定结构,并计算了它们的结合能.研究发现,在气相和水相中,槲皮素均通过qu1位点与腺嘌呤作用形成稳定的氢键复合物.比较了腺嘌呤与槲皮素形成的氢键复合物、腺嘌呤与胸腺嘧啶形成的Watson-Crick碱基对的相对稳定性.在气相条件下Watson-Crick碱基对更稳定,在水相条件下腺嘌呤与槲皮素形成的氢键复合物更稳定,说明水相条件下腺嘌呤与槲皮素之间的相互作用强于与胸腺嘧啶之间的相互作用.基于标准反应Gibbs自由能变的计算结果估算了水相条件下腺嘌呤与槲皮素形成的氢键复合物和Watson-Crick碱基对的相对平衡浓度.     

Organocatalytic Transformation of Aldehydes to Thioesters with Visible Light

A metal- and oxidant-free catalytic method for accessing structurally diverse thioesters from readily accessible, widespread aldehydes, is described. A strategy of a simple organic 9,10-phenanthrenequinone-promoted hydrogen atom transfer (HAT) with visible light was successfully implemented to selectively generate acyl radicals without inducing crossover reactivity of thioester products. The preparative power of the method was demonstrated by broad substrate scope and wide functional group tolerance, and enabled the late-stage modification of complex structures, which are difficult to achieve with the existing protocols.     

A theory of molecules in molecules IV. Application to the Hydrogen Bonding Interaction in NH3 · H2O

The theory of molecules in molecules introduced in previous articles is applied to study the hydrogen bonding interaction between an ammonia molecule as proton acceptor and a water molecule as proton donor. The localized orbitals which are assumed to be least affected by the formation of the hydrogen bond are transferred unaltered from calculations on the fragments NH₃ and H₂O, the remaining orbitals are recalculated. A projection operator is used to obtain orthogonality to the transferred orbitals. Additional approximations have been introduced in order to be able to save computational time. These approximations can be justified and are seen to lead to binding energies and bond lengths which are in satisfactory agreement with the SCF values. The point charge approximation for the calculation of the interaction energy between the two sets of transferred localized orbitals is, however, not applicable in this case. An energy analysis of the effect of the hydrogen bond on the localized orbitals of the two fragments is given.     

槲皮素与尿嘧啶和胸腺嘧啶氢键的结合位点

深入理解药物分子和核酸碱基间的相互作用机制对合理设计研发新型高效药物有重要意义. 本文运用密度泛函理论B3LYP方法对核酸碱基尿嘧啶和胸腺嘧啶与药物分子槲皮素间的氢键相互作用位点进行了研究. 使用B3LYP/6-31G(d)方法优化得到了30个稳定的氢键复合物结构, 使用B3LYP/6-311++G(3df,2p)方法计算了这些复合物的结合能. 研究结果表明, 槲皮素可以使用5个不同的结合位点与尿嘧啶或胸腺嘧啶形成氢键复合物, 尿嘧啶或胸腺嘧啶可以使用3个不同的结合位点与槲皮素形成氢键复合物. 当槲皮素的结合位点固定时, 槲皮素与尿嘧啶的位点u1或胸腺嘧啶的位点t1形成的氢键作用最强, 与位点u2或位点t2形成的氢键强度最弱; 当尿嘧啶或胸腺嘧啶的作用位点固定时, 二者与槲皮素的位点qu1 形成的氢键作用最强, 与位点qu5 作用强度次之, 与位点qu3的作用强度最弱. 分子中原子(AIM)和自然键轨道(NBO)分析计算结果表明, 轨道作用在氢键中起重要作用.     

On the Relative Preference of Enamine/Iminium Pathways in an Organocatalytic Michael Addition Reaction

The right path : The mechanism of organocatalyzed Michael addition between propanal and methyl vinyl ketone is investigated using the density functional and ab intio methods. The kinetic preference for the formation of key intermediates is established in an effort to identify the competing pathways associated with the reaction. The effect of co‐catalyst/protic solvent on the energetics of the reaction is also studied

     

DSC Differential Spectrum Applied in the Study of Hydrogen Bonding Interaction in Aqueous Solution

In this work, thermal signals of the interaction between urea (UR) and partly hydrolyzed polyacrylamide (HPAM) in aqueous solution were first investigated by differential scanning calorimetry (DSC) differential spectrum and 2-dimensional (2-D) differential spectrum analysis. A remarkable interaction between urea and HPAM was found when the temperature was about 40°C. Near this temperature, the hydrogen bonding between the carbonyl group of HPAM and water would dissociate partly, and another hydrogen bonding between carbonyl and amino would form simultaneously. Not only the DSC differential spectrum, but also a rheological experiment and two-dimensional correlation infrared spectrum (2-D-IR) were used to prove this result.     

Hydrogen Bonding: From Small Clusters to Biopolymers

Summary.  High quality ab initio computations and molecular spectroscopy of small hydrogen-bonded clusters in the vapor phase provide highly accurate data in general agreement with the theory of hydrogen bonds developed in the seventies. Hydrogen bonding is a major force determining energetics and structures of biopolymers. In addition to direct influence through their directionality, hydrogen bonds set the stage for the formation of biopolymer structures indirectly since they determine the water structure. On the basis of current results hydrophobic interactions are considered equally important or even more relevant than direct hydrogen bonding. A new concept for protein and nucleic acid folding which is based on statistical mechanics allows to study the role of hydrogen bond formation in the nucleation process as well as in later states. Received May 3, 1999. Accepted May 4, 1999     

Hydrogen Bonding Interactions of Radicals

Hydrogen bonding interactions of organic radicals are systematically studied using diverse ab initio and density functional theory (DFT) methods. It is found that open-shell hydrogen bonds with radical proton donors are more difficult to model than those with radical proton acceptors. The DFT methods perform significantly worse than the unrestricted second order Möller-Plesset perturbation (UMP2) method in both geometry optimization and interaction energy calculations for the open-shell hydrogen bonds. The UB3LYP method seriously underestimates the donor-acceptor distances and overestimates interaction energies for the open-shell hydrogen bonds with radical proton donors. Nevertheless, use of the UBH&HLYP functional to study the open-shell hydrogen bonds is still acceptable. Furthermore, it is necessary to use sufficiently flexible basis sets, such as 6-311++G(2df,2p), to get reliable interaction energies for the open-shell hydrogen bonds. The open-shell proton donors are stronger Lewis acids than the corresponding closed-shell proton donors. The open-shell proton acceptors are weaker Lewis bases than the corresponding closed-shell proton acceptors.     

氢键能量分划方法

介绍几种氢键能量分划方法以及它们的优缺点,并结合氢键体系的研究现状讨论理论方法在实际体系中的应用。     

Role of Hydrogen‐Bonding Acceptors in Organo‐Enamine Catalysis

A hydrogen bond acceptor plays an important role in the catalytic cycle of organo‐enamine catalysis. It can effectively influence the rate of reaction through hydrogen bonding interaction with enammonium (N‐protonated enamine intermediate). Our findings are supported by both kinetic experiments and quantum chemical calculations.     

碱基腺嘌呤与多肽酰胺间氢键作用的最佳位点

正确理解核酸碱基和蛋白质多肽间的作用机制有助于人们利用这些生物分子有效地进行分子设计,进而制备具有特殊纳米结构和功能的生物分子材料.本文优化得到了碱基腺嘌呤与N-甲基乙酰胺、甘氨酸二肽、丙氨酸二肽形成的20个氢键复合物的结构并计算了结合能,探讨了腺嘌呤与多肽酰胺间氢键作用的最佳位点.研究发现:腺嘌呤可以使用两个不同位点(A1位点和A2位点)与N-甲基乙酰胺形成N―H…N型或者N―H…O=C型氢键复合物,腺嘌呤使用A1位点与N-甲基乙酰胺形成的N―H…N型氢键复合物更稳定;二肽分子可以使用主链上两个不同位点(丙氨酸的Ala7位点和Ala5位点或者甘氨酸的Gly7位点和Gly5位点)与腺嘌呤形成含有N―H…N和N―H…O=C两条氢键的复合物,二肽分子使用Ala7或Gly7位点与腺嘌呤形成的氢键复合物更稳定;腺嘌呤与多肽间的氢键作用强于其与N-甲基乙酰胺的作用.基于分子中的原子理论与自然键轨道计算结果分析了氢键作用的本质.