A simple FTIR technique for estimating the surface area of silica powders and films

A simple technique using FTIR spectroscopy to estimate the surface area of porous and non-porous silica powders is presented. The surface area is estimated by comparing the integrated area of the band due to isolated silanol groups on different silicas. We have found that by using a fumed silica as a calibrant, an accuracy of about 7% in the surface area of several silica materials is obtained when compared to the surface area computed by BET nitrogen adsorption techniques. The FTIR technique for computing surface area is simple and takes very little time to complete the analysis. The principle advantage of this method is that it enables surface area measurements of silica films on porous supports. To the best of our knowledge, there are no other methods that provide this information.     

A robust and efficient method for estimating enzyme complex abundance and metabolic flux from expression data

A major theme in constraint-based modeling is unifying experimental data, such as biochemical information about the reactions that can occur in a system or the composition and localization of enzyme complexes, with high-throughput data including expression data, metabolomics, or DNA sequencing. The desired result is to increase predictive capability and improve our understanding of metabolism. The approach typically employed when only gene (or protein) intensities are available is the creation of tissue-specific models, which reduces the available reactions in an organism model, and does not provide an objective function for the estimation of fluxes. We develop a method, flux assignment with LAD (least absolute deviation) convex objectives and normalization (FALCON), that employs metabolic network reconstructions along with expression data to estimate fluxes. In order to use such a method, accurate measures of enzyme complex abundance are needed, so we first present an algorithm that addresses quantification of complex abundance. Our extensions to prior techniques include the capability to work with large models and significantly improved run-time performance even for smaller models, an improved analysis of enzyme complex formation, the ability to handle large enzyme complex rules that may incorporate multiple isoforms, and either maintained or significantly improved correlation with experimentally measured fluxes. FALCON has been implemented in MATLAB and ATS, and can be downloaded from: https://github.com/bbarker/FALCON. ATS is not required to compile the software, as intermediate C source code is available. FALCON requires use of the COBRA Toolbox, also implemented in MATLAB.     

DSC for evaluating the encapsulation efficiency of lidocaine-loaded liposomes compared to the ultracentrifugation method

Journal of Thermal Analysis and Calorimetry - This study reports the investigation of liposomal formulations of lidocaine in the form of a free base (LID). LID was encapsulated into large...     

A new method for estimating the drying sensitivity of clay

Fourteen clays with different drying sensitivity were selected for developing a rapid method of estimation of their drying sensitivity. The clays were arranged in a series according to results of complex technological tests in a decreasing order of their drying sensitivity. It is proposed to determine only that portion of the losses that is released in the temperature range above the drying temperature, at 100–200°C in order to compare different clays as regards the interlayer moisture lost during drying. A relationship was found between the amount of moisture liberated at temperature up to 200°C, mineralogical composition and drying behaviour of clays. Having determined the amount of the interlayer moisture lost at 100–200°C, it is possible to quantitatively evaluate the content of component adversely affecting the drying sensitivity and predict the drying behaviour of a given clay.     

A high-throughput method for the quantification of iron saturation in lactoferrin preparations

Lactoferrin is considered as a part of the innate immune system that plays a crucial role in preventing bacterial growth, mostly via an iron sequestration mechanism. Recent data show that bovine lactoferrin prevents late-onset sepsis in preterm very low birth weight neonates by serving as an iron chelator for some bacterial strains; thus, it is very important to control the iron saturation level during diet supplementation. An accurate estimation of lactoferrin iron saturation is essential not only because of its clinical applications but also for a wide range of biochemical experiments. A comprehensive method for the quantification of iron saturation in lactoferrin preparations was developed to obtain a calibration curve enabling the determination of iron saturation levels relying exclusively on the defined ratio of absorbances at 280 and 466 nm (A _280/466). To achieve this goal, selected techniques such as spectrophotometry, ELISA, and ICP-MS were combined. The ability to obtain samples of lactoferrin with determination of its iron content in a simple and fast way has been proven to be very useful. Furthermore, a similar approach could easily be implemented to facilitate the determination of iron saturation level for other metalloproteins in which metal binding results in the appearance of a distinct band in the visible part of the spectrum.     

A new high-throughput LC-MS method for the analysis of complex fructan mixtures

In this paper, a new liquid chromatography-mass spectrometry (LC-MS) method for the analysis of complex fructan mixtures is presented. In this method, columns with a trifunctional C18 alkyl stationary phase (T3) were used and their performance compared with that of a porous graphitized carbon (PGC) column. The separation of fructan isomers with the T3 phase improved clearly in comparison with the PGC phase, and retention times were lower and more stable. When the T3-based method was applied on a wheat grain extract, multiple fructan isomers could be discerned, even for fructans with a degree of polymerization of 10. This indicates that wheat grain fructans do not, or not only, have a simple linear structure. The presented method paves the way for elucidation of fructan structures in complex mixtures that contain many structural isomers.     

A biostimulation-based accelerated method for evaluating the biodegradability of polymers

The high cost and long duration of the existing standard tests, such as ASTM D5338 and ISO 14855, represents an important drawback in evaluating the biodegradability of polymers. This works presents a new accelerated method for this purpose, based on the use of a Bartha respirometer and biostimulation with yeast extract. The new method was applied to microcrystalline cellulose (MCC), low density polyethylene (LDPE), poly(3-hidroxybutyrate) (PHB), poly(lactic acid) (PLA), poly(vinyl alcohol) (PVOH), polypropylene (PP) and poly(ethylene terephthalate) (PET). The results obtained with these polymers were consistent with those of the standard methods in terms of differentiating biodegradable and non-biodegradable polymers and relative order of biodegradation extent. Besides, a significant reduction of test duration was achieved (from 45 to 110 days with ASTM D5338 or ISO 14855 to 28 days). These results corroborate the potential of the proposed method as a fast test for assessment of biodegradation of polymeric materials.     

A statistical method for estimating the proportion of differentially expressed genes

Microarrays have been widely used to identify differentially expressed genes. One related problem is to estimate the proportion of differentially expressed genes. For some complex diseases, the amount of differentially expressed genes may be relatively small and these genes may only have subtly differential expressions. For these microarray data, it is generally difficult to efficiently estimate the proportion of differentially expressed genes. In this study, I propose a likelihood-based method coupled with an expectation-maximization (E-M) algorithm for estimating the proportion of differentially expressed genes. The proposed method has favorable performances if either (i) the P values of differentially expressed genes are homogeneously distributed or (ii) the proportion of differentially expressed genes is relatively small. In both of these situations, I showed through simulations that the proposed method gave satisfactory performances when it was compared to other existing methods. As applications, these methods were applied to two microarray gene expression data sets generated from different platforms.     

A high-throughput optical screening method for the optimization of colloidal water oxidation catalysts

A high-throughput method has been developed for screening and optimization of colloidal water oxidation catalysts. The catalysts are irradiated in parallel by visible light from an overhead projector in solutions containing tris(2,2'-bipyridyl)ruthenium(II) (Ru(bpy)(3)(2+)) and persulfate. The array of reaction solutions is held in a 96-well plate, and absorbance readings are taken intermittently using a bioassay plate reader. The absorbance at 430 nm is indicative of the amount of Ru(bpy)(3)(2+) remaining in solution. The best catalysts give the most persistent absorbance, because the oxygen evolution reaction is kinetically competitive with decomposition of Ru(bpy)(3)(3+). Reagent concentrations were varied using a factorial design-of-experiment approach in order to optimize reaction conditions for a IrO(2).xH(2)O colloidal catalyst. A higher colloid concentration, a lower Ru(bpy)(3)(2+) concentration, and a higher pH buffer doubled the number of turnovers relative to the original conditions. Metal oxide colloids consisting of IrO(2).xH(2)O doped with varying amounts of Pt, Ru, and Os were made using a parallel microwave synthesis technique and were tested both by the parallel screening method and by direct measurement of oxygen evolution. The correlation between the two methods was good, with Ir-Pt-Os oxide compositions showing the highest activity. The effect of adding small amounts of Pt and Os to IrO(2).xH(2)O appears to be predominantly to reduce the particle size of the colloids.     

天然植物复杂化学模式特征的分步提取法

在运用神经元计算技术对高维小样本复杂化学模式进行分类时,通过模式特征提取,降低输入变量维数,能使复杂的模式分类问题比较容易解决。根据模式类别相关分步分析思路,提出复杂化学模式特征分步提取法,可将原始模式数据中与类别指标相关较大的特征量有效地提取出来。应用于天然植物组效关系辨识结果表明,这种化学模式特征提取方法比经典主成分分析法更为实用可靠。     

Ring conserved isodesmic reactions: A new method for estimating the heats of formation of aromatics and PAHs

Density functional theory (DFT) has been used along with isodesmic reaction schemes to estimate heats of formation for aromatics and polynuclear aromatic hydrocarbons (PAHs). Calculations have been performed for 42 molecules, 12 of which have uncertain or unknown experimental values, using the B3-LYP functional with the small 6-31G(d) basis set. Heats of formation for the group of test molecules were estimated using both conventional bond separation (BS) isodesmic reactions as well as a new technique of ring conserved (RC) isodesmic reactions which is able to correct systematic errors in B3-LYP calculations. When a ring conserved isodesmic reaction based on delocalization energies is used, the estimated heat of formation is more accurate than that obtained by the bond separation technique. The methodology for creating and using appropriate ring conserved isodesmic reactions is discussed. The present scheme also compares favorably against a recently developed bond centered group additivity scheme that was tested against a large number of PAH molecules.     

A simple method for estimating the superaromatic stabilization energy of a super-ring molecule

A simple graph-theoretical method is proposed for readily estimating the degree of extra stabilization due to macrocyclic conjugation (superaromaticity). This method is based theoretically on the concept of circuit resonance energy previously defined for cyclic pi systems. We confirmed that kekulene and related super-ring molecules are essentially nonsuperaromatic, with very small superaromatic stabilization energies.     

A simple and fast method for evaluating the athermal limit of semirigid liquid polymers

A simple method is reported allowing the fast evaluation of the athermal limit that is implicitly present within the set of equations recently proposed by Jonah, Brostow and Hess, dealing with the anisotropic‐isotropic equilibria of single monodisperse or nearly monodisperse semirigid liquid polymers, including polymer liquid crystals. We have found an athermal limit dependent on the degree of rigidity θ of the given semirigid liquid polymer (θ being the fraction of its monomeric units belonging to rigid rodlike sequences within each semiflexible polymeric chain) and marked off by critical lengths η_al of the rigid sequences, giving rise to non‐finite asymptotic values of the anisotropic‐isotropic temperatures.     

A simple and affordable method for high-throughput DNA extraction from animal tissues for polymerase chain reaction

We have developed a very simple and inexpensive method for high-throughput DNA extraction from animal tissues. The procedure contains three steps (digestion, heating, and centrifugation) and it is compatible with the 96-well plate format commonly used in polymerase chain reaction (PCR) amplifications. The duration for processing a plate is about 1.5 h; therefore, one researcher can isolate DNA from up to 1000 samples during a single workday. A small piece of tissue (ca. 10-20 mg) yields enough template for at least 50-70 PCR amplifications, as demonstrated by using the processed samples as templates successfully for long distance PCR, multiplex PCR, and randomly amplified polymorphic DNA (RAPD) assay. The application of our method is expected to facilitate studies that require high-throughput DNA isolation for PCR amplification, such as genotyping by microsatellites for mapping and genetic diversity studies, as well as mutant screening in zebrafish.     

A potential high-throughput method for the determination of lipase activity by potentiometric flow injection titrations

Potentiometric FIA titrations were performed to determine enzyme activities of lipase type B from Candida antarctica, CAL-B. Two substrates, triacetin and tributyrin were hydrolyzed in phosphate buffer solutions, and the concentration change of the base component of the buffer was titrated in a carrier solution containing hydrochloric acid and potassium chloride. The system was calibrated with butyric acid and acetic acid, respectively. FIA titration peaks were evaluated with respect to peak height and peak area. Butyric acid and acetic acid could be titrated in the buffer solution from 3 × 10⁻³ mol L⁻¹ to 0.1 mol L⁻¹. The detection limit of enzyme activity was determined to be 0.07 U mL⁻¹ (15 min reaction time) and the minimum activity was calculated to be 0.035 units corresponding to 35 nmol min⁻¹. The specific activities of lipase B for the hydrolysis of tributyrin and triacetin were determined as 16 ± 2 U mg⁻¹ and 2 ± 0.2 U mg⁻¹ (per mg commercial lipase preparation), respectively.     

Validation of a microscale extraction and high-throughput UHPLC-QTOF-MS analysis method for huperzine A in Huperzia

Herein we report on an improved method for the microscale extraction of huperzine A (HupA), an acetylcholinesterase‐inhibiting alkaloid, from as little as 3 mg of tissue homogenate from the clubmoss Huperzia squarrosa (G. Forst.) Trevis with 99.95% recovery. We also validated a novel UHPLC‐QTOF‐MS method for the high‐throughput analysis of H. squarrosa extracts in only 6 min, which, in combination with the very low limit of detection (20 pg on column) and the wide linear range for quantification (20–10,000 pg on column), allow for a highly efficient screening of extracts containing varying amounts of HupA. Utilization of this methodology has the potential to conserve valuable plant resources. Copyright © 2012 John Wiley & Sons, Ltd.