Intramolecular MLOH/π and MLNH/π interactions in crystal structures of metal complexes

Intramolecular metal-ligand OH/π (MLOH/π) and metal-ligand NH/π (MLNH/π) interactions in transition metal complexes between aqua or ammine ligand and ligand containing a C6-aromatic ring were investigated in crystal structures deposited in the Cambridge Structural Database (CSD). These intramolecular interactions appear in 38 structures with aqua ligand as the hydrogen atom donor and in 10 structures with ammine ligand as the hydrogen atom donor. Among all these complexes only one is negatively charged, 14 are positively charged and 33 are neutral indicating that the overall charge of the molecule has an influence on the XH/π (X = O or N) interactions. Energy estimated by DFT calculations is approximately 19 kJ mol⁻¹ for the MLOH/π interactions and approximately 15 kJ mol⁻¹ for the MLNH/π interactions. Dedicated to Professor Milan Melník on the occasion of his 70th birthday     

Coenzyme B12 model studies: Equilibrium constants for the pH-dependent axial ligation of benzyl(aquo)cobaloxime by various N- and S-donor ligands

Equilibria of the axial ligation of benzyl(aquo)cobaloximes by imidazole, 1-methyl imidazole, histidine, histamine, glycine, ethyl glycine ester, thiourea and urea have been spectrophotometrically measured in aqueous solutions of ionic strength 1.0M (KCl) at 25°C as a function of pH. The equilibrium constants are in the order CN⁻> 1-methyl imidazole > imidazole > histidine > histamine>glycine>ethyl glycine ester > thiourea > urea. The order of stability of benzyl(ligand)cobaloxime is explained based on the basicity of the ligand, Co(III) →>L dπ- pπback bonding and soft-soft and soft-hard interaction. Imidazole, substituted imidazoles, histidine and histamine form more stable complexes than glycine, ethyl glycine ester in contrast to the basicity of the ligands. Benzyl(ligand)cobaloximes were isolated and characterized by elemental analysis, IR and¹H NMR spectra.     

Charge transfer complexes of methylnaphthalene derivatives with TCNE in CCl4.

The spectrophotometric and thermodynamic properties of different substituted methylnaphthalenes charge transfer (CT) complexes with tetracyanoethylene have been studied in carbon tetrachloride. The spectral characteristics of the CT bands have also been discussed in relation to the positions of methyl groups. The formation constants and the spectral properties of the complexes are markedly affected with the substitution position of the methyl groups. The ionization potentials of the donors are determined.     

A theoretical study of photoinduced electron transfer between tetracyanoethylene and arene

 Ab initio calculations have been performed to investigate the state transition in photoinduced electron transfer reactions between tetracyanoethylene and biphenyl as well as naphthalene. Face-to-face conformations of electron donor–acceptor (EDA) complexes were selected for this purpose. The geometries of the EDA complexes were determined by using the isolated optimized geometries of the donor and the acceptor to search for the maximum stabilization energy along the center-to-center distance. The correction of interaction energies for basis set superposition error was considered by using counterpoise methods. The ground and excited states of the EDA complexes were optimized with complete-active-space self-consistent-field calculations. The theoretical study of the ground state and excited states of the EDA complex in this work reveals that the S₁ and S₂ states of the EDA complexes are charge–transfer (CT) excited states, and CT absorption which corresponds to the S₀→S₁ and S₀→S₂ transitions arise from π−π^* excitation. On the basis of an Onsager model, CT absorption in dichloromethane was investigated by considering the solvent reorganization energy. Detailed discussions on the excited state and on the CT absorptions were made. Received: 30 April 2001 / Accepted: 18 October 2001 / Published online: 9 January 2002     

Electronic structure of axially ligated rhodium carboxylates: π back-bonding revisited

Fenske-Hall molecular orbital calculations have been applied to a new, structurally isolable analog of the intermediate involved in catalytic rhodium carboxylate carbenoid transformations. Results from the structural characterization of axially ligated rhodium acetate phenylisonitrile complexes have been utilized in approximate molecular orbital calculations. The results from the calculations suggest that a significant degree of π back-bonding exists between the metal and isonitrile fragments which, by analogy, implies that π back-bonding should also exist in the rhodium carbenoid intermediate. Sensitivity of the Fenske-Hall method to the magnitude of π back-donation in these complexes was gauged through calculations involving different phenylisonitrile groups in which the π back-bonding ability was modulated through derivativization. The reliability of the Fenske-Hall method was evaluated through a comparison to a high-level calculation. Received: 13 December 1996 / Accepted: 18 March 1997     

Usefulness of π...π aromatic interactions in the selective separation and analysis of imidazolium and pyridinium ionic liquid cations

Current research indicates that replacing organic solvents with room-temperature ionic liquids may lead to remarkable improvements in well-known processes. Ionic liquids have already been utilized as alternative solvents in organic synthesis and catalysis, and also in electrochemistry and in separation sciences. Their wide applicability will soon result in their production on an industrial scale. Therefore, analytical methods applicable to various matrices for product control and environmental monitoring will be very much in demand. In this study, the usefulness of π...π interactions between alkylimidazolium and pyridinium cations and the aromatic π...π active moiety of the stationary phase was investigated for the selective separation and analysis of some ionic liquids. With phenyl-bonded phases, very good separations of the cations were achieved. Special attention was paid to the short-chain hydrophilic entities, known to be poorly separated on conventional reversed-phase columns. Further, the nature of the interactions occurring in the system under study was investigated by varying the content of methanol/acetonitrile used as organic modifiers in the mobile phases. The analytical method developed here is simple and reproducible, and its quantitative analytical performance was excellent. The paper also discusses the applicability of the method for monitoring degraded cations of 1-butyl-3-methylimidazolium salts obtained in the Fenton process.     

The first ionization potentials and conjugation in benzene derivatives containing organosilicon, organogermanium, organotin, and organolead substituents

The inductive and resonance effects of silicon-, germanium-, tin-, and lead-containing and some organic substituents on the HOMO energies (E _HOMO) for 43 monosubstituted andp-disubstituted benzene derivatives were analyzed in the Koopmans approximation. A linear dependence between the perturbation energy δE and the resonanceσ _R ⁺ parameters of the substituents was established. The Koopmans approximation is a rough approximation for the compounds studied, since to provide for its rigorous fulfilment, the δE values must depend on the σ _R ⁰ parameters of the substituents. The principal regularities of increasing the σ,π-conjugation between the organoelement substituents and the π-system caused by a positive charge on the benzene ring were established. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 1, pp. 70–75, January 1997.     

Spectral and electrochemical properties of mono-, bi-, and tetranuclear cyclopalladized complexes based on 2-(2-thienyl)pyridine and 2-phenylpyridine with pyridine and 4,4′-bipyridyl

Mono-, bi-, and tetranuclear cyclopalladized complexes based on 2-(2-thienyl)pyridine and 2-phenylpyridine with pyridine and 4,4′-bipyridyl were prepared and characterized by the methods of ¹H NMR, electron absorption and emission spectroscopy, and also by the voltammetry method. The values of the coordination-induced shifts of proton in the ligands of the complexes were determined; the upfield displacement of chemical shifts of protons of the cyclopalladized ligand nearest to the metal was assigned to the anisotropic action of a ring current of the pyridine rings orthogonal to the coordination plane in 4,4′-bipyridyl and pyridine. Long-wave absorption bands of the complexes were assigned to the spin-allowed optical d-π charge-transfer transitions, and the bands of the low-temperature phosphorescence, to the intraligand π-π_NyyC^* transitions. Three waves of the reduction of the complexes were assigned to the ligand-centered processes of successive electron transfer on π* orbitals preferentially localized on coordinated pyridine and cyclopalladized ligands.     

Palladium(II) complexes with 1-allyl-3-(2-pyridyl)thiourea: Synthesis and spectroscopic characterization

New Pd(II) complexes with 1-allyl-3-(2-pyridyl)thiourea (APTU) of the formulas [Pd(C₉H₁₁N₃S)Cl₂] (I) and [Pd(C₉H₁₁N₃S)₂]Cl₂ (II) were obtained and examined by UV-Vis, IR, and 1H NMR spectroscopy. The conditions for the complexation reactions were optimized. The instability constants and molar absorption coefficients of these complexes were calculated. Comparison of the characteristic bands in the UV-Vis and IR spectra of the complexes and free APTU revealed that the ligand in both complexes is coordinated to the metal atom in the thione form in the bidentate chelating mode through the S atom of the thiourea group and the pyridine N atom. In the UV-Vis spectra of the complexes, the charge transfer bands (π → π* Py) and n → π* (C=N_Py), (C=S) experience hypsochromic shifts by 450–470 cm⁻¹ caused by the coordination of APTU to the metal ion, which gives rise to ligand-metal charge-transfer bands (C=N_Py → Pd, n → π* (C=S)) and (SPd). The protons in the 6-, 4-, and 3-positions of the pyridine ring and the thiourea NH proton in the chelate ring are most sensitive to the complexation.     

Spectroscopic and thermodynamic study of charge transfer complexes of cloxacillin sodium in aqueous ethanol medium

Cloxacillin sodium has been shown to form charge transfer (CT) complexes of 1:1 stoichiometry with a number of electron acceptors in 50% (v/v) aqueous ethanol medium. From the trends in the CT absorption bands, the vertical ionization potential of the drug molecule (cloxacillin sodium) has been estimated to be 7.89 eV. The enthalpies and entropies of formation of two such complexes have been determined by estimating the formation constants spectrophotometrically at five different temperatures. The oscillator strengths and transition dipole moments of these complexes have been determined. It has further been noted that the reduction of o-chloranil by aqueous ethanol is completely inhibited by cloxacillin sodium, a phenomenon that makes the present study of formation equilibrium possible.     

Investigation of Metal Ion Complexation of π-Coordinate Calixarene Derivatives by Electrospray-Ionization Mass Spectrometry

Complexation of π-coordinate calix[4]arene derivatives toward soft metal ions, silver and thallium (I) ions, has been studied by electrospray-ionization mass spectrometry. Competitive metal–ion complexation of three calix[4]arene derivatives demonstrates a significant effect of olefinic substituents and its location on the silver ion complexation, but there was no effect of them on the thallium ion complexation. The stability constants for the metal ion complexes of the calixarene derivatives in methanol have been successfully determined by a mass-spectrometric method using 18-crown-6 as the reference ligand.     

Novel type of mixed O–H···N/O–H···π hydrogen bonds: monohydrate of pyridine

Investigation of characteristics of hydrogen bonding between pyridine and water by MP2/aug-cc-pvdz method reveals that these two molecules may form three types of hydrogen bonds depending on nature of proton withdrawal site of pyridine. Change of orientation of water with respect to plane of aromatic ring leads to transformation of the O–H···N bond to O–H···π bond via wide region of the potential energy surface where both lone pair of the nitrogen atom and π-system make significant contribution into hydrogen bonding. Hydrogen bond in this intermediate region may be considered as mixed O–H···N/O–H···π bond representing new type of H bonds.     

Intensity of bands of the C≡C stretching modes in the IR spectra and conjugation in silylacetylenes

A comparative study of the integrated extinction coefficients (A) of the C≡C stretching bands in the IR spectra of acetylene derivatives Me₃SiC≡CR, HC≡CR, and Me₃CC≡CR was carried out. The resonance interactions of substituents with a triple bond are the main cause of the changes in the values ofA. The total resonance effect of the Me₃Si fragment involves both acceptor (d, π-conjugation) and donor (σ, π-conjugation) components; d, π-conjugation dominates in the silylacetylenes studied. Theσ _R ⁰ resonance constant of the Me₃Si substituent in compounds Me₃SiC≡CR is 0.17±0.02. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 1, pp. 76–80. January 1997.     

How π-electron delocalisation reflects replacement of H+ with Li+ in variously substituted malonaldehydes

Correlations were studied between the properties of Bader's ring and bond critical points calculated for variously substituted malonaldehyde (containing intramolecular H-bond) and its π-electron delocalisation expressed by aromaticity indices HOMA and NICSs. It was observed that π-electron delocalisation of the system strongly depends on the substituent and its position. Replacement of the H⁺ with Li⁺ in malonaldehyde allowed us to study the role of unoccupied 2p orbital in π-electron delocalisation. In the case of lithium system the aromaticity is increased as compared with the malonaldehyde itself and moreover with the malonaldehyde anion. This proves that the unoccupied 2p orbital of Li⁺ may play a significant role in delocalisation of π-electrons due to its low orbital energy. In the case of lithium system the substituent effect is negligible, which resembles the situation in benzene derivatives. Dedicated to Prof. Karl Jug on the occasion of his 65th birthday anniversary.     

Corannulene derivatives as models for calculations of fullerene derivatives

Hypothetical derivatives of corannulene C₂₀H₁₀ (Cor), namely, CorX₅ ^• radicals, CorX₅ ⁻ anions (X=H, Cl, or Br), and their η⁵-π-complexes with SiCp, were calculated by the MNDO/PM3 method. The possibilities of using the results of these calculations for modeling the electronic structure and geometry of fragments of the analogous complexes of the fullerene derivatives C₆₀X₅ are discussed. Calculations of C₆₀X₅ ^• radicals and C₆₀X₅ ⁻ anions were also carried out. In all the compounds under study, the X atoms are attached to carbon atoms in α positions with respect to the same five-membered ring. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 7, pp. 1268–1272, July, 1997.     

Electronic Structure of Cu(II) Complexes with N,N′-Disalicylidene-1,2-cyclohexanediamine and N,N′-Disalicylidenetrimethylenediamine

Summary.  The electronic absorption and X-ray photoelectron spectra of N,N′-disalicylidenetrimethylenediaminatocopper(II) ([Cu(saltn)]) and N,N′-disalicylidene-trans-1,2-cyclohexanediaminatocopper(II) ([Cu(salchx)]) were measured. From these results and from informations derived from MO calculations the electronic structure of the complexes was clarified. Each electronic absorption band which can be assigned to the ππ^ast; or ML/LMCT transition of [Cu(saltn)] or [Cu(salchx)] observed in the wavelength region of 450–200 nm appears at the almost same frequency as the corresponding band of N,N′-disalicylideneethylenediaminatocopper(II) ([Cu(salen)]) in solution. The LLCT bands (the intramolecular CT band between two π-electronic systems separated by saturated hydrocarbon chains such as ) also appear at nearly the same positions (ca. 245 nm) for [Cu(salchx)], [Cu(saltn)], and [Cu(salen)]. The locations of the dd transition and the intensity of the ML/LMCT transition of [Cu(saltn)] are significantly different from those of [Cu(salen)] and [Cu(salchx)]. These differences may arise from the strengths of the interaction between metal and ligand. Received August 21, 2001. Accepted (revised) October 20, 2001     

Structural and electronic properties of single-walled carbon nanotubes adsorbed with 1-pyrenebutanoic acid, succinimidyl ester

The adsorption of a 1-pyrenebutanoic acid, succinimidyl ester (PSE) interacting with metallic armchair (n, n) carbon nanotubes (CNTs) (n= 3-13) was investigated by using a density-functional tight-binding method with an empirical van der Waals force correction. In this study of large systems involving weak interactions, our calculations showed that the pyrene ring of PSE could be spontaneously absorbed onto the CNTs surface through π-π stacking at the physisorption distances. Increasing of the CNTs diameter leads to a higher adsorption energy. After adsorption of PSE on its sidewall, the geometric and electronic structures of CNTs are basically undamaged. CNTs contribute to the main peak of the electron excitation procedure in the UV/vis spectrum, with a slight red shift after adsorption of PSE.     

TD-DFT Calculation on UV-Vis Spectra of the Complex 8-((Trimethoxysilyl)methylthio)quinoline⋅ZnCl<Subscript>2</Subscript>

The electronic structure and absorption spectra properties of the complex 8-((trimethoxysilyl)methylthio)quinoline⋅ZnCl₂ in the gas phase and in acetonitrile (MeCN) have been investigated by means of DFT/TD-DFT calculations. Calculation results indicate that the broad and weak experimentally observed absorption bands of the complex in MeCN at 335.6 nm originates from spin-forbidden singlet-triplet transitions, but the other experimentally observed absorption bands at 318.5 nm, 310.6 nm and 237.5 nm arise from spin-allowed singlet-singlet transitions. Inclusion of MeCN as solvent leads to dramatic changes in the electronic structures and energy levels of the frontier molecular orbitals of the complex, and hence transition mechanisms of the absorption bands are also changed. For the complex, whether in the gas phase or in MeCN, the metal Zn does not participate in the transitions involved, in the gas phase the calculated lowest-energy absorption band of the complex comes from π→π ^∗ mixed with n→π ^∗ transitions with LLCT (ligand-to-ligand charge transfer) character, while in MeCN, the calculated lowest-energy absorption band is of LLCT/ILCT (intra-ligand charge transfer) character.     

Dynamics of the transmembrane domain of the ErbB-2 receptor

The structure and dynamics of the ErbB-2 transmembrane domain have been examined using molecular dynamics techniques both in vacuum and within an explicit hydrated L-α-dilauroyl-phosphatidyl-ethanolamine environment. In-vacuum simulations show that a highly cooperative structural transition occurs frequently within the α-helical transmembrane domain which converts to local π-helices. We show that the α-helix alteration does not depend upon the force field or initial side-chain conformations but is intimately related to the sequence. The membrane-like environment does not prevent the structural transition in the helix but slows down the peptide dynamics indicating that the appearance of a π-bulge is not an artifact of the vacuum approximation. The consequences of π-helix formation could be very huge for the ErbB-2 receptor which is involved in numerous human cancers and also for other membrane proteins wherein similar local structures are also observed experimentally. Received: 9 May 1998 / Accepted: 3 September 1998 / Published online: 17 December 1998