Inhomogeneous charge transfer within monolayer zinc phthalocyanine absorbed on TiO2(110)

The d-orbital contribution from the transition metal centers of phthalocyanine brings difficulties to understand the role of the organic ligands and their molecular frontier orbitals when it adsorbs on oxide surfaces. Here we use zinc phthalocyanine (ZnPc)/TiO(2)(110) as a model system where the zinc d-orbitals are located deep below the organic orbitals leaving room for a detailed study of the interaction between the organic ligand and the substrate. A charge depletion from the highest occupied molecular orbital is observed, and a consequent shift of N1s and C1s to higher binding energy in photoelectron spectroscopy (PES). A detailed comparison of peak shifts in PES and near-edge X-ray absorption fine structure spectroscopy illustrates a slightly uneven charge distribution within the molecular plane and an inhomogeneous charge transfer screening between the center and periphery of the organic ligand: faster in the periphery and slower at the center, which is different from other metal phthalocyanine, e.g., FePc/TiO(2). Our results indicate that the metal center can substantially influence the electronic properties of the organic ligand at the interface by introducing an additional charge transfer channel to the inner molecular part.     

Probing Supramolecular Interactions between a Crown Ether Appended Zinc Phthalocyanine and an Ammonium Group Appended to a C60 Derivative

Self‐assembly driven by crown ether complexation of zinc phthalocyanines equipped with one 18‐crown‐6 moiety and fullerenes bearing an ammonium head group afforded a novel donor–acceptor hybrid. In reference experiments, fullerenes containing a Boc‐protected amine functionality have been probed. The circumvention of zinc phthalocyanine aggregation is important for the self‐assembly, which required the addition of pyridine. From absorption and fluorescence titration assays, which provided sound and unambiguous evidence for mutual interactions between the electron donor and the electron acceptor within the hybrids, association constants in the order of 8.0×10⁵ m ^?1 have been derived. The aforementioned is based on 1:1 stoichiometries, which have been independently confirmed by Job's plot measurements. In the excited state, which has been examined by transient absorption experiments, intermolecular charge separation evolves from the photoexcited zinc phthalocyanine to the fullerene subunit and leads to short‐lived charge‐separated states. Interestingly, photoexcitation of zinc phthalocyanine dimers/aggregates can also be followed by an intermolecular charge separation between vicinal phthalocyanines. These multicomponent supramolecular ensembles have also been shown by in‐depth electrospray ionization mass spectrometry (ESI‐MS) studies, giving rise to the formation and detection of a variety of non‐covalently linked species.     

Spectrophotometric study of complexation equilibria with H-point standard addition and H-point curve isolation methods

The use of H-point curve isolation (HPCIM) and H-point standard addition methods (HPSAM) for spectrophotometric studies of complex formation equilibria are proposed. One step complex formation, two successive stepwise and mononuclear complex formation systems, and competitive complexation systems are studied successfully by the proposed methods. HPCIM is used for extracting the spectrum of complex or sum of complex species and HPSAM is used for calculation of equilibrium concentrations of ligand for each sample. The outputs of these procedures are complete concentration profiles of equilibrium system, spectral profile of intermediate components, and good estimation of conditional formation constants. The reliability of the method is evaluated using model data. Spectrophotometric studies of murexide-calcium, dithizone-nickel, methyl thymol blue (MTB)-copper, and competition of murexide and sulfate ions for complexation with zinc, are used as experimental model systems with different complexation stoichiometries and spectral overlapping of involved components.     

毛细管电泳测定物质三元相互作用体系的结合系数

毛细管电泳一般只能对二元结合体系的结合常数进行测定。研究了三元相互竞争体系的毛细管电泳测定方法,测定了金属锌离子与酒石酸和半胱氨酸以及锌离子与乳酸和半胱氨酸两个三元结合体系的结合常数,并以此比较了两种锌形态与半胱氨酸结合能力的大小。本法可用于测定两配体相互竞争结合体系的结合常数。     

Zinc ion-tetraphenylporphyrin interactions in the ground and excited states

In the present article, tetraphenylporphyrin a new ratiometric fluorescence sensitizer for zinc ion has been proposed. Electronic absorption, emission and (1)H NMR spectral characteristics of meso-tetraphenylporphyrin (TPP) have been studied in acetonitrile medium in the presence of zinc perchlorate. Absorption spectral studies indicate the formation of a new complex between zinc ion and the porphyrin moiety in the ground state as distinguished from the characteristics of metalo(zinc) porphyrin compound. The energy of maximum fluorescence of porphyrin shifts towards blue with the addition of Zn(ClO(4))(2). Steady state emission studies point to the existence of two emitting species viz, the solvated and the complexed porphyrin in equilibrium. The fluorescence emission of tetraphenylporphyrin at 651-nm bands decreases while that at 605 nm increases upon zinc ion interaction in acetonitrile. Thus, the TPP can behave as a ratiometric fluorescent sensor. This fluorescence modulation of TPP should be applicable to dual-wavelength measurement of various biomolecules or enzyme activities. (1)H NMR spectra of the porphyrin suffered a radical change with the addition of zinc perchlorate which points to the formation of a new porphyrin complex. This change is due to the difference in the electron-donating ability of the pyrrolic nitrogens before and after complexation with Zn(2+). The values of equilibrium constant for the binding process have been determined in acetone and acetonitrile, in both ground and excited states.     

Self-association of sulfo derivatives of cobalt phthalocyanine in aqueous solution

Sulfo derivatives of cobalt phthalocyanine containing naphthalene fragments have been synthesized, and their self-association and molecular complexation with pyridine in aqueous solution have been studied by spectrophotometry. The dissociation constants of the dimeric associates have been determined. The effects of the number of functional groups in the peripheral substituents and of the axial ligand on the phthalocyanine dimerization process have been revealed.     

Tunable photochromism of spirooxazines via metal coordination

Through the incorporation of a phenanthroline ligand into the oxazine moiety of photochromic spirooxazines, a series of photochromic spirooxazine-phenanthroline metal complexes have been synthesized, resulting in tunable and significantly increased photoresponsivities. Such systems are of interest for the investigation of multifunctional photochromic materials. These novel metal complexes retain their photochromic activity in the complexed state, leading to ligand binding in both the spirooxazine and the photomerocyanine forms during the photoconversion. A significant stabilization of the photomerocyanine form results from metal complexation, as indicated by the shift in thermal equilibrium values (KT = 0.06) upon metal complexation (KT = 0.6-1.2). Photoconversion occurs with first-order kinetics, suggesting the absence of an intermediate state. A third photostationary state is observed in these systems induced by visible irradiation of the thermal equilibrium state, leading to a three-state system. This new class of compounds provides the opportunity to investigate the synergy between changes in electronic structure associated with photoisomerization, and metal-centered functionality.     

Determination of zinc to beta-peptide binding constants with electrospray ionization mass spectrometry

We present an improvement of the titration method for binding constant determination with electrospray ionization (ESI) mass spectrometry that is unaffected by differences in ESI response of measured species in solution. The method consists of a calibration and titration, both using an internal standard that allows relative quantitation. This avoids artifacts such as a decrease in overall signal intensity with increasing ligand concentrations, rendering this approach more reliable and meaningful than direct evaluation of ESI peak intensities. We demonstrate the de novo binding constant determination of novel zinc binding beta-peptides, which have been synthesized with the goal of creating secondary structures stabilized by metal complexation.     

Complexation,crystallography, and electrochemistry of new chelating nicotinyl and thiazolyl anthraquinone ligands

Chelating anthraquinone ligands that contain nicotinyl and thiazolyl binding units have been synthesized. The complexation chemistry of these new ligands has also been explored using cadmium(II), lead(II), and ruthenium(II). The nicotinic substituted anthraquinone acts as a bidentate ligand, while the thiazolyl substituted anthraquinone binds in a tetradentate arrangement, not previously observed. Due to steric limitations, the number of these ligands that can coordinate to metal centers appears limited to bis-substituted products. Crystallographic data for both the free ligands and the cadmium and lead complexes are reported. Electrochemical data indicate that interaction does not take place between the intraannular carbonyl group and the neighboring metal centers within these complexes.     

Calculating dispersion interactions using maximally localized Wannier functions

We investigate a recently developed approach [P. L. Silvestrelli, Phys. Rev. Lett. 100, 053002 (2008); J. Phys. Chem. A 113, 5224 (2009)] that uses maximally localized Wannier functions to evaluate the van der Waals contribution to the total energy of a system calculated with density-functional theory. We test it on a set of atomic and molecular dimers of increasing complexity (argon, methane, ethene, benzene, phthalocyanine, and copper phthalocyanine) and demonstrate that the method, as originally proposed, has a number of shortcomings that hamper its predictive power. In order to overcome these problems, we have developed and implemented a number of improvements to the method and show that these modifications give rise to calculated binding energies and equilibrium geometries that are in closer agreement to results of quantum-chemical coupled-cluster calculations.     

Probing the potential of N-heterocyclic carbenes in molecular electronics: redox-active metal centers interlinked by a rigid ditopic carbene ligand

Bimetallic homonuclear iron(II) and ruthenium(II) N-heterocyclic carbene complexes have been synthesized and crystallographically analyzed. As a spacer ligand for interconnecting the two redox-active metal centers, a ditopic carbene ligand has been used that comprises two carbene sites annelated to benzene. Detailed electrochemical and spectroelectrochemical analyses of the bimetallic systems revealed that despite the potentially pi-delocalized nature of the ditopic ligand, the iron centers are only moderately coupled. In the ruthenium complexes, the intermetallic interactions are very weak and the centers are electrochemically nearly independent. A model is proposed for rationalizing these observations which is based on (I) relatively weak charge delocalization in the spacer ligand and (II) on electrostatic factors governing the metal-carbene bond.     

Detection and characterization of nonspecific,sparsely populated binding modes in the early stages of complexation

A method is proposed to study protein–ligand binding in a system governed by specific and nonspecific interactions. Strong associations lead to narrow distributions in the proteins configuration space; weak and ultraweak associations lead instead to broader distributions, a manifestation of nonspecific, sparsely populated binding modes with multiple interfaces. The method is based on the notion that a discrete set of preferential first‐encounter modes are metastable states from which stable (prerelaxation) complexes at equilibrium evolve. The method can be used to explore alternative pathways of complexation with statistical significance and can be integrated into a general algorithm to study protein interaction networks. The method is applied to a peptide–protein complex. The peptide adopts several low‐population conformers and binds in a variety of modes with a broad range of affinities. The system is thus well suited to analyze general features of binding, including conformational selection, multiplicity of binding modes, and nonspecific interactions, and to illustrate how the method can be applied to study these problems systematically. The equilibrium distributions can be used to generate biasing functions for simulations of multiprotein systems from which bulk thermodynamic quantities can be calculated. © 2015 Wiley Periodicals, Inc.     

Calculation of equilibrium formation constants of complexes with a polydentate oligomer

A methodology of the calculation of ligand-oligomer complex formation and cooperative binding constants by the matrix method is described. Theoretical analysis of the equilibrium binding between a ligand and a polydentate oligomer having a system of sites with different ligand affinities is performed. The simulated equilibrium complex formation between the oligonucleotide G4-DNA and porphyrin TMPyP4 was used to construct and analyze diagrams of the relative fraction of DNA-ligand complexes by the matrix method. Cooperative ligand binding to a system of nonequivalent sites can be established by chemometric analysis and rigid modeling of spectrophotometric titration data (in terms of the chemical equilibrium model).     

Multi-electron Reduction Capacity and Multiple Binding Pockets in Metal–Organic Redox Assembly at Surfaces

Metal–ligand complexation at surfaces utilizing redox-active ligands has been demonstrated to produce uniform single-site metals centers in regular coordination networks. Two key design considerations are the electron storage capacity of the ligand and the metal-coordinating pockets on the ligand. In an effort to move toward greater complexity in the systems, particularly dinuclear metal centers, we designed and synthesized tetraethyltetra-aza-anthraquinone, TAAQ, which has superior electron storage capabilities and four ligating pockets in a diverging geometry. Cyclic voltammetry studies of the free ligand demonstrate its ability to undergo up to a four-electron reduction. Solution-based studies with an analogous ligand, diethyldi-aza-anthraquinone, demonstrate these redox capabilities in a molecular environment. Surface studies conducted on the Au(111) surface demonstrate TAAQ′s ability to complex with Fe. This complexation can be observed at different stoichiometric ratios of Fe:TAAQ as Fe 2p core level shifts in X-ray photoelectron spectroscopy. Scanning tunneling microscopy experiments confirmed the formation of metal–organic coordination structures. The striking feature of these structures is their irregularity, which indicates the presence of multiple local binding motifs. Density functional theory calculations confirm several energetically accessible Fe:TAAQ isomers, which accounts for the non-uniformity of the chains.     

Supramolecular Zinc Phthalocyanine–Imidazolyl Perylenediimide Dyad and Triad: Synthesis,Complexation, and Photophysical Studies

Two new supramolecular architectures based on zinc phthalocyanine (Pc) and imidazolyl‐substituted perylenediimide (PDI), ZnPc/DImPDI/ZnPc 1 and ZnPc/ImPDI 2 , have been prepared. A strong electron‐donor, 8 , which contained eight tert‐octylphenoxy groups was synthesized to ensure high solubility, thereby reducing aggregation in solution and providing σ‐donor features while avoiding regioisomeric mixtures. Also, PDI units were functionalized with tert‐octylphenoxy groups at the bay positions, which provide solubility to avoid aggregation in solution, together with one and two imidazole moieties in the amide position, 6 and 4 , respectively, to be able to strongly coordinate with the ZnPc complex. Supramolecular complexation studies by ¹H NMR spectroscopy and ESI‐MS demonstrate a high coordinative binding constant between imidazole‐substituted 4 or 6 and 8 . The same results were confirmed by UV/Vis and fluorescence titration studies. UV/Vis titration studies revealed the formation of a 1:1 complex ZnPc/ImPDI 2 for the systems 8 and 6 and a 2:1 complex ZnPc/DImPDI/ZnPc 1 for the interaction of 8 and 4 . The binding constant in both cases was determined to be on the order of 10⁵ M ⁻¹. Femtosecond laser flash photolysis measurements provided a direct proof of the charge‐separated state within both supramolecular assemblies by observing the transient absorption band at 820 nm due to the zinc phthalocyanine radical cation. The lifetimes of charge‐separated states are (9.8±3) ns for triad 1 and (3±1) ns for dyad 2 . As far as we know, this is the first time that a radical ion pair has been detected in a supramolecular assembled ZnPc–PDI system and has obtained the longest lifetime of a charge‐separated state published for ZnPc–PDI assemblies.     

Tripodal europium complex with triangulenium dye: a model bifunctional metallo-organic system

A new tripodal ligand has been designed by coupling pyridyldicarbonyl binding strands with a triazatriangulenium platform (TATA). The complexation reaction with europium provides a C(3)-symmetrical mononuclear compound that is characterized with NMR, ESMS and qualitatively with single-crystal X-ray crystallography. In addition, photophysical studies of this dual emissive system have been performed, since the combination of the TATA fluorophore with trivalent lanthanides is of potential interest for the further development of imaging applications.     

Divalent ligand for intramolecular complex formation to streptavidin

Monovalent ligand and divalent ligand have been synthesized, and their thermodynamic parameters of complexation to avidin and streptavidin have been analyzed in terms of multivalent binding.     

The NMR spectra of the porphyrins. 17—Metalloporphyrins as diamagnetic shift reagents,structural and specificity studies

The nature of the metalloporphyrin-ligand complexes produced by zinc, magnesium and cobalt porphyrins with basic ligands has been investigated using the diamagnetic ring current shifts of the porphyrin on the ligand protons. The metal to nitrogen bond lengths in some metallo-meso-tetraphenylporphyrin (pyridine) complexes have been determined and compared with the data of the crystalline complexes. The geometry of the Zn meso-tetraphenylporphyrin complexes with 2-picoline, quinoline and isoquinoline has been investigated. Steric interactions between the ligand and the porphyrin in 2-picoline and quinoline produce a dramatic increase in the Zn? N bond length when compared to the unstrained analogues pyridine and isoquinoline. This large increase is associated with comparatively minor angle distortions in the complex. The specificity of the Zn meso-tetraphenylporphyrin complexation shifts has been determined for a range of benzyl and butyl compounds. The complexation shift is linearly related to the basicity of the ligand for a wide range of basicities.     

A computational study on metal ion/PADA complexation in water and in glycerol

Modelling of the metal ion/ligand complexation reaction between divalent metal cation (M²⁺) and bidentate ligand pyridine-2-azo-p-dimethylaniline (PADA) has been carried out in water and in glycerol. Using ZINDO/1 method, semi-empirical molecular orbital calculations were carried out on all the species involved. The results have been compared with the experimental data obtained previously in bulk and dispersed systems. Kinetic studies have shown that the rate and equilibrium constants of the reaction in bulk water and in dispersed water and/or glycerol is very dependent on the metal ion, with Zn²⁺>Ni²⁺, but not so in bulk glycerol. Theoretical calculations have been seen to be supportive of the experimental observations.     

DNA cleavage by the photocontrolled cooperation of Zn(II) centers in an azobenzene-linked dizinc complex

We synthesized a new photoactive dinuclear zinc(II) complex by linking two zinc centers with a ligand containing an azobenzene chromophore and investigated the DNA cleavage activities of its trans and cis forms. The trans structure of the dinuclear zinc complex was determined by X-ray crystallography, where each zinc center is situated in an octahedral coordination environment comprised of three nitrogen atoms from the ligand and three oxygen atoms from two nitrate ions. The dinuclear zinc complex containing the azobenzene chromophore was photoisomerizable between the trans and cis forms. The binding affinities of the trans and cis complexes with calf thymus (CT)-DNA were similar. Although the DNA cleavage activity of the trans complex was negligible, the cis complex was able to cleave DNA. We attribute the efficient activity of the cis complex to the cooperation of the two closely located zinc centers and the inactivity of the trans complex to the two metal centers positioned far away from each other. The DNA cleavage activity of the cis complex exhibited a pH-dependent bell-shaped profile, which has been observed in the hydrolytic cleavage of DNA by zinc complexes. The DNA cleavage activity was not inhibited by a major groove binder, methyl green, but decreased significantly by a minor groove binder, 4',6-diamidino-2-phenylindole, indicating that the dinuclear zinc complex binds to the minor groove of DNA. The present work shows the importance of the cooperation of two zinc ions for hydrolytic DNA cleavage, which can be photoregulated by linking the two metal centers with a photoisomerizable spacer, such as an azobenzene chromophore.