Peptide inhibitors of viral assembly: a novel route to broad-spectrum antivirals

We investigated the potential of small peptide segments to function as broad-spectrum antiviral drug leads. We extracted the α-helical peptide segments that share common secondary-structure environments in the capsid protein-protein interfaces of three unrelated virus classes (PRD1-like, HK97-like, and BTV-like) that encompass different levels of pathogenicity to humans, animals, and plants. The potential for the binding of these peptides to the individual capsid proteins was then investigated using blind docking simulations. Most of the extracted α-helical peptides were found to interact favorably with one or more of the protein-protein interfaces within the capsid in all three classes of virus. Moreover, binding of these peptides to the interface regions was found to block one or more of the putative "hot spot" regions on the protein interface, thereby providing the potential to disrupt virus capsid assembly via competitive interaction with other capsid proteins. In particular, binding of the GDFNALSN peptide was found to block interface "hot spot" regions in most of the viruses, providing a potential lead for broad-spectrum antiviral drug therapy.     

Novel route to periodic mesoporous aminosilicas, PMAs: ammonolysis of periodic mesoporous organosilicas

A new route to periodic mesoporous aminosilicas (PMAs) that contain amine functional groups in the framework of a mesoporous network is reported. The materials are prepared via thermal ammonolysis of periodic mesoporous organosilicas (PMOs) under a flow of ammonia gas. PMOs integrate similar or even higher quantities of nitrogen-containing groups upon ammonolysis than similarly treated ordered mesoporous silicas (MCM-41). The quantity of amine groups introduced into the materials was found to depend strongly on the ammonolysis temperature. The largest loading of amine groups was obtained when a well-ordered cubic methylene PMO material without prior vacuum-drying was thermolyzed in ammonia. The ordered mesoporosity of PMOs was preserved during the ammonolysis with only a slight decrease in the mesopore size and the degree of mesostructural ordering. The extent of substitution of framework oxygen by amine and nitride groups was established by solid-state (29)Si CP-MAS, (29)Si MAS, (15)N MAS, and (13)C CP-MAS NMR spectroscopies, elemental analysis, and X-ray photoelectron spectroscopy. In some cases, methylene and methyl functional groups were also present in the PMAs along with amine functional groups, as inferred from elemental analysis and gas adsorption, particularly in cases where PMOs were subjected to ammonolysis at 400 and 550 degrees C for several hours. This resulted in new multifunctional mesoporous organoaminosilica nanomaterials with properties that could be tuned by systematically varying the relative amounts of hydrophilic amine and hydrophobic hydrocarbon pendent and framework groups. The stability upon storage was found to be much higher for PMAs obtained from PMOs than for those obtained from MCM-41 silicas under the same conditions.     

Nanoparticle-driven assembly of block copolymers: a simple route to ordered hybrid materials

The addition of nanoparticles that selectively hydrogen bond with one of the segments of a block copolymer is shown to induce order in otherwise disordered systems. This enables the fabrication of well-ordered hybrid materials with spherical, cylindrical, or lamellar domains at particle loadings of more than 40%, as evidenced by TEM and SAXS. The approach described is simple and applicable to a wide range of nanoparticles and block copolymers, and it lays the groundwork for the design of cooperatively assembled functional devices.     

Anion-directed assembly of a three-dimensional metal-organic rotaxane framework

A three-dimensional extended, metal-organic rotaxane framework (MORF) that incorporates encircled "struts" has been synthesized through a one-pot self-assembly process involving a macrocyclic tetraimidazolium "molecular box", naphthalene dicaboxylate dianion, and Zn(II) cations. The present system represents progress towards controlling the features of three-dimensional metal-organic frameworks.     

Molecular-glue-triggered DNA assembly to form a robust and photoresponsive nano-network

A robust and photoresponsive DNA network has been designed and constructed from branched DNA and molecular glue. The molecular glue is photoswitchable and can specifically bind to G-G mismatched double-stranded DNA. The assembly process can be reversibly controlled by manipulating the wavelength of light. The approach is flexible, allowing tuning of the size, morphology as well as the cavity of the network by variation of the molar ratio and the isotropic/anisotropic character of the branched building blocks. The assembled architectures are versatile and heat tolerant. These properties should allow the use of the network in further applications.     

The DNA three-way junction as a mould for tripartite chromophore assembly

The DNA three-way junction serves as a scaffold for the molecular organization of non-nucleosidic alkynylpyrene and perylenediimide chromophores located at the branch point of the structure. Depending on the composition of the tripartite assembly, the constructs possess distinct spectroscopic properties, ranging from monomer or excimer fluorescence to completely quenched tripartite aggregates.     

Silica dissolution as a route to octaanionic silsesquioxanes

The octaanion, [OSiO_1.5]₈^8? (OA) is a low cost, discrete nano silica particle that can be made directly from high surface area, amorphous silica reacted with Me₄NOH in water alcohol mixtures. It would be ideal if Me₄NOH could be formed in situ from, for example, Me₄NCl and NaOH, as long known in the literature. This process would reduce costs and enable recycling of Me₄NCl produced in the functionalization of OA with chlorosilanes, RMe₂SiCl, to form [RMe₂SiOSiO_1.5]₈ organic/inorganic hybrid nanobuilding blocks. Kinetic studies were conducted to assess base‐promoted dissolution of fumed silica (25 m 2 /g) as a function of concentrations, times, etc., to form the octaanion [OSiO_1.5]₈^8? using Me₄NOH, NaOH and mixtures of NaOH/Me₄NCl. Surprisingly, we find that small amounts of Me₄NCl greatly inhibit the dissolution reaction for reasons that are as yet unknown. Copyright © 2005 John Wiley & Sons, Ltd.     

Carbene-carbene rearrangements as a route to 1,5-dihydropentalene

1,5-Dihydropentalene (4) is formed as the main product on treatment of trans-1,2-bis(2,2-dibromocyclo-propyl)ethene 3 with methyllithium at −40°. In addition the reaction affords 1- and 2-propadienylcyclopentadienes (5a) and (5b), and trans-1,2,4,6,7-octapentaene (6), new C₈H₈ isomers. Diels-Alder adducts of 4, 5a and 5b were obt in the reaction with perfluorobut-2-yne. The formation of 1,5-dihydropentalene 4 is explained by a double ring expansion sequence involving consecutive carbene-carbene rearrangements with 1,3-carbon and subsequent 1,2-hydrogen shifts, supported by the reaction of double labelled (¹³C-depleted) 3. From readily available 3 at low temperatures formation and fusion of two 5-membered rings are achieved in one step.     

Programming the assembly of two- and three-dimensional architectures with DNA and nanoscale inorganic building blocks

The use of biochemical molecular recognition principles for the assembly of nanoscale inorganic building blocks into macroscopic functional materials constitutes a new frontier in science. This article details efforts pertaining to the use of sequence-specific DNA hybridization events and novel inorganic surface coordination chemistry to control the formation of both two- and three-dimensional functional architectures.     

Directed deprotonation-transmetalation as a route to substituted pyridines

Regioselective C-4 deprotonation of 3-bromopyridine, followed by Li/Zn transmetalation and Pd-mediated coupling processes, provides a flexible entry to 4-substituted and 3,4-disubstituted pyridines. Application of a similar sequence to 2-bromopyridine (with LDA as base) provides 2,3-disubstituted pyridines, but using lithium 2,2,6,6-tetramethylpiperidide (LiTMP) provides access to both the 2,3- and 2,4-disubstituted isomers.     

Anionic oligomerization as a route to chain clusters

The combination of two old concepts (the "sigma-donor" capability of M-H bonds and the propensity of unsaturated complexes for addition reactions) has led to the first example of addition oligomerization of an organometallic analogue of olefins: chains containing cis-[Re(CO)4] units joined by Re-H-Re interactions have been obtained through the oligomerization of the unsaturated complex [Re2(micro-H)2(CO)8] promoted by anionic "initiators". The limits of the method and the possible extension to other substrates are discussed.     

Transmetalation as a route to novel styryllithium reagents

[structure: see text] Transmetalation of beta-tributyl(styryl)stannanes with n-BuLi gives the functional equivalents of the corresponding styryllithium intermediates. Reaction of the intermediates with chlorotrimethylsilane, iodomethane, or dimethyl sulfate gives the substituted styryl products in moderate to good yields. In all cases, the configuration about the double bond was retained in the products.     

Helicate extension as a route to molecular wires

We describe the preparation of a helicate containing four closely spaced, linearly arrayed copper(I) ions. This product may be prepared either directly by mixing copper(I) with a set of precursor amine and aldehyde subcomponents, or indirectly through the dimerization of a dicopper(I) helicate upon addition of 1,2-phenylenediamine. A notable feature of this helicate is that its length is not limited by the lengths of its precursor subcomponents: each of the two ligands wrapped around the four copper(I) centers contains one diamine, two dialdehyde, and two monoamine residues. This work thus paves the way for the preparation of longer oligo- and polymeric structures. DFT calculations and electrochemical measurements indicate a high degree of electronic delocalization among the metal ions forming the cores of the structures described herein, which may therefore be described as "molecular wires".     

Reconfigurable three-dimensional DNA nanostructures for the construction of intracellular logic sensors

Right out of the (logic) gate: Logic gates made from 3D DNA nanotetrahedra were constructed that are responsive to various ions, small molecules, and short strands of DNA. By including dynamic sequences in one or more edges of the tetrahedra, a FRET signal can be generated in the manner of AND, OR, XOR, and INH logic gates, as well as a half-adder circuit. These DNA logic gates were also applied to intracellular detection of ATP.     

Design and construction of three-dimensional graphene/conducting polymer for supercapacitors

Three-dimensional graphene/conducting polymer(3DGCP) composites have received significant attention in recent years due to their unique structures and promising applications in energy storage.With the structural diversity of graphene and π-functional conducting polymers via rich chemical routes,a number of 3DGCP composites with novel structures and attractive performance have been developed.Particularly,the hierarchical porosity,the interactions between graphene and conducting polymers as well as the their synergetic effects within 3DGCP composites can be well combined and elaborated by various synthetic methods,which made 3DGCP composites show unique electrochemical properties and significantly improved performance in energy storage fields compared to other graphenebased composites.In this short review,we present recent advances in 3DGCP composites in developing effective strategies to prepare 3DGCP composites and exploring them as a unique platform for supercapacitors with unprecedented performance.The challenges and future opportunities are also discussed for promotion of further study.     

Use of Stille-type cross-coupling as a route to oligopyridylimines

The new tin reagents, 2-(n-Bu₃Sn)-6-{C(R)OCH₂CH₂O}-C₅H₃N, (R=H a, Me b), have been employed in Stille-type cross-coupling reactions with a range of oligopyridylbromides generating, following a facile deprotection step, a series of formyl- and acetyl-functionalised oligopyridines. Condensation reactions with 2,6-diisopropylaniline has allowed access to families of novel sterically bulky multidentate N,N,N,N (tetradentate), N,N,N,N,N (pentadentate), N,N,N,N,N,N (sexidentate) and N,N,N,N,N,N,N (heptadentate) nitrogen donor ligands. This work represents a straightforward and rapid synthetic route for the preparation of oligopyridylimines, which are expected to act as useful components for the self-assembly of polymetallic complexes.     

CO2 as a supramolecular assembly agent: a route for lamellar materials with a high content of amine groups

The uptake of carbon dioxide on N-(2-aminoethyl)-3-aminopropyltrimethoxysilane 1 and N-(6-aminohexyl)-3-aminopropyltrimethoxysilane 2 afforded a supramolecular network of bis-silylated ammonium carbamate salts, the hydrolytic polycondensation of which gave rise to structured hybrid materials. Subsequent loss of CO2 was readily achieved upon heating, thus generating materials in which the structure was maintained (well-defined lamellar structure from 2) and contains free amino groups. The accessibility of amine-functionalized groups was shown by their ability to complex transition metal or lanthanide salts.