Effect of ring torsion on intramolecular vibrational redistribution dynamics of 1,1'-binaphthyl and 2,2'-binaphthyl

The role of ring torsion in the enhancement of intramolecular vibrational energy redistribution (IVR) in aromatic molecules was investigated by conducting excitation and dispersed fluorescence spectroscopy of 1,1'-binaphthyl (1,1'-BN) and 2,2'-BN. The dispersed fluorescence spectra of 1,1'-BN in the origin region of S(1)-S(0) were well resolved, which presented 25-27 cm(-1) gaps of torsional mode in the ground state. The overall profile of the dispersed spectra of 1,1'-BN is similar to that of naphthalene. In contrast, the spectra of 2,2'-BN were not resolved due to the multitude of the active torsional modes. In both cases, dissipative IVR was observed to take place with a relatively small excess vibrational energy: 237.5 cm(-1) for 1,1'-BN and 658 cm(-1) for 2,2'-BN, which clearly shows that ring torsion efficiently enhances the IVR rate. Ab initio and density functional theory calculations with medium-sized basis sets showed that the torsional potential of 1,1'-BN has a very flat minimum over the range of torsional angles from ca. 60° to 120°, whereas that of 2,2'-BN showed two well-defined potential minima at ca. 40° and 140°, in resemblance to the case of biphenyl. In this work, we propose that aromatic molecules be classified into "strong" and "weak" torsional hindrance cases: molecules with strong hindrance case show shorter torsional progressions and more effective IVR dynamics than do those with weak hindrance.     

Jet spectroscopy of organic scintillation compounds: low-frequency modes of 2,5-diphenylfuran and related species

The fluorescence excitation spectra of a number of furan-based scintillation compounds, including 2,5-diphenylfuran (PPF), have been measured under jet-cooled conditions. While many of the species are effectively planar, steric crowding is found to force diphenylisobenzofuran into a non-planar ground state, so that two rotameric forms are observed. The molecule PBD is also found to be non-planar, consistently with literature data for biphenyl itself. Finally, evidence of torsional mode coupling is observed for α-naphthyl-substituted compounds.     

DIFFERENTIAL EFFECTS OF A DNA-SYNTHESIS MUTATION ON UV-INDUCED MUTATION YIELDS IN VEGETATIVE CELLS AND SPORES OF BACILLUS SUBTILIS

Abstract— The absorption and emission properties of the photochemically produced dipyrimidine adducts are analyzed at 300 and 77K. Those adducts which have a saturated C(5)—C(6) bond in the pyrimidin-2,4-dione (Pyr) ring and a pyrimidin-2-one (Pyo) ring behave spectroscopically as a substituted Pyo. However, those consisting of one Pyr and one Pyo moiety can be considered as bichromophoric molecules and their spectral properties can be understood in terms of the relative torsional angle between the two rings. The adduct with the most bulky substituents ortho to the torsional bond bears the largest torsional angle and exhibits relatively independent absorption and emission phenomenon. At the other extreme, those adducts with no substituents at this position exist as almost planar molecules and exhibit considerable overlap of absorption bands as well as room temperature fluorescence which, in certain cases, is characteristic of intramolecular exciplex interaction. Using inter-ring torsional angles of ortho-substituted biphenyl molecules as a basis for comparative calculation, quantitative estimates of the torsional angles in dipyrimidine adducts at 300K have been made.     

Why does the intermolecular dynamics of liquid biphenyl so closely resemble that of liquid benzene? Molecular dynamics simulation of the optical-Kerr-effect spectra

The combination of optical-Kerr-effect (OKE) spectroscopy and molecular dynamics simulations has provided us with a newfound ability to delve into the librational dynamics of liquids, revealing, in the process, some surprising commonalities among aromatic liquids. Benzene and biphenyl, for example, have remarkably similar OKE spectra despite marked differences in their shapes, sizes, and moments of inertia--and even more chemically distinct aromatics tend to have noticeable similarities in their spectra. We explore this universality by using a molecular dynamics simulation to investigate the librational dynamics of molten biphenyl and to predict its OKE spectrum, comparing the results with our previous calculations for liquid benzene. We suggest that the impressive level of quantitative agreement between these two liquids is largely a reflection of the fact that librations in these and other aromatic liquids act as torsional oscillations with oscillator frequencies selected from the liquid's librational bands. Since these bands are centered about the librational Einstein frequencies, the quantitative similarities between the liquids are essentially reflections of the near identities of their Einstein frequencies. Why then are the Einstein frequencies themselves so insensitive to molecular details? We show that, for nearly planar molecules, mean-square torques and moments of inertia tend to scale with molecular dimensions in much the same way. We demonstrate that this near cancellation provides both a quantitative explanation of the close relationship between benzene and biphenyl and a more general perspective on the similarities seen in the ultrafast dynamics of aromatic liquids.     

Effect of methyl rotation on the electronic spectrum of the methyl peroxy radical

Recent experiments have prompted a theoretical investigation of the effect of methyl rotation on the A-X electronic spectrum of the CH3O2 and CD3O2 radicals. Quantum chemistry calculations have mapped the potential for the methyl rotation. Using these results, we calculate the torsional eigenvalues for both the A and X states and simulate the A-X spectrum. We find that the simulation captures the salient features of the spectrum. These features include torsional sequence structure, whose band contours change dramatically as the lower level nears the barrier, as well as atypical torsional transitions occurring from levels near the top and above the barrier. "Experimental" barrier heights are deduced for both the X and A states of methyl peroxy by modestly scaling the calculated potential to best reproduce the observed spectra.     

Structures of 1,2,3-trihydroxybenzene in the S0 and S1 states

In this paper we report on the structure and vibrations of gaseous pyrogallol (1,2,3-trihydroxybenzene) in the electronic ground state (S₀) and its first electronically excited state (S₁). Both ab initio CASSCF/CASMP2 calculations as well as R2PI spectroscopy have been performed. From the ab initio calculations three minimum energy structures are obtained and the vibrations of two structures are observed in the R2PI spectra. The minimum energy structures differ by their OH torsional angles. The full three-dimensional potential energy surface of the coupled torsional motions is investigated and the three-dimensional eigenvalues are calculated. The most stable structure of pyrogallol contains two intramolecular hydrogen bonds and turns out to be planar in the S₀ state. In the S₁ state the free OH group is rotated out of the plane of the aromatic ring by about 40°. The strong change in geometry of this structure is predicted by the CASSCF calculations and confirmed by the R2PI spectra of pyrogallol and its deuterated species. The low frequency region of the R2PI spectra can be explained by a torsional motion and the out of plane vibration 17b.     

Free-jet studies of the visible spectroscopy of some perhalonitrosomethanes

Recent work on the electronic spectroscopy of halogen substituted nitrosomethanes in the visible spectral region is reviewed with particular reference to laser-induced fluorescence and photofragment yield spectra in supersonic free-jet expansions. The A(n, π*)-X electronic spectra in the 650–720 nm region are dominated by progressions in low frequency torsional modes, that reflect eclipsed to staggered dihedral conformational changes upon electronic excitation. The observed torsional progressions can be understood well on the basis of spectral simulations that utilize a simple one-dimensional Hamiltonian for the hindered internal rotation. The relevance of these laser spectroscopic studies for current work on the state-selected photophysics and photodissociation dynamics of the title compounds is highlighted.     

The pressure dependence of the low-frequency Raman spectra of crystalline biphenyl and p-terphenyl

Raman spectra as a function of hydrostatic pressure are presented for crystalline biphenyl and p-terphenyl. The observed changes in the low-frequency Raman spectra of crystalline biphenyl indicate that there are probably some changes in the crystal or molecular structure with increasing pressure. The Raman spectra of p-terphenyl have no evident anomalies at pressures up to 33 kbar.     

Coherent control of molecular torsion

We propose a coherent, strong-field approach to control the torsional modes of biphenyl derivatives, and develop a numerical scheme to simulate the torsional dynamics. By choice of the field parameters, the method can be applied either to drive the torsion angle to an arbitrary configuration or to induce free internal rotation. Transient absorption spectroscopy is suggested as a probe of torsional control and the usefulness of this approach is numerically explored. Several consequences of our ability to manipulate molecular torsional motions are considered. These include a method for the inversion of molecular chirality and an ultrafast chiral switch.     

THE ENANTIOMERISM OF 2-THIONO-2-MERCAPTO-DIBENZO-(d,f)(1,3,2)-DIOXOPHOSPHEPIN

Abstract

The bridged biphenyl system in the molecule of 2-thiono-2-mercapto-dibenzo-(d, f)(1,3,2)-dioxophosphepin is twisted and dissymmetric. The two enantiomers were resolved by cinchonidine and cinchonine, having [α]²² _D = (+)9.37° and (?)8.94° respectively. They are optically stable at 20°C in benzene, but racemized readily in methanol. The U.V. spectra give a torsional angle of the racemic acid as 24.6°.     

Impact of neighboring chains on torsional defects in oligothiophenes

Conjugated organic oligomers are central to the development of efficient organic electronic devices and organic photovoltaics. However, the torsional flexibility of many of these organic materials, in particular oligothiophenes, can adversely affect charge transfer properties. Although previous studies have examined the torsional flexibility of oligothiophenes, there have been only limited studies of the effects of interchain interactions on their torsional potentials. B97-D/TZV(2d,2p) was first benchmarked against a CCSD(T)/aug-cc-pVTZ torsional potential for bithiophene as well as SCS-MP2/TZVPP interaction energies for noncovalent sexithiophene (6T) dimers. The effect of neighboring chains on three distinct torsional modes of sexithiophene was studied using B97-D. Complexation with one or more neighboring chains has a dramatic effect on each of these torsional potentials. For example, for two stacked chains, alternated twisting motions are competitive with torsion about a single terminal dihedral angle, and in both cases we predict nonplanar global energy minima and large amplitude torsional motions at room temperature. In other words, the presence of a single neighboring chain induces significant deviations from planarity in oligothiophenes. However, in the environment of crystalline 6T, the trend in predicted torsional potentials match those of isolated chains, but the force constants associated with torsional motions increase by an order of magnitude. Consequently, although individual oligothiophene chains are torsionally flexible and model stacked dimers exhibit extreme deviations from planarity, in crystalline 6T these oligomers are predicted to adopt planar configurations with a steep energetic cost associated with torsional defects.     

Core excitations of biphenyl

High-resolution C(1s) near-edge X-ray absorption and X-ray photoionization spectra of the free biphenyl molecule are presented and theoretically analyzed in order to allow an assignment of the observed spectral features. Finite lifetime broadening, a high density of vibrational states, and a strong overlap of contributions from chemically different carbon atom sites only partially allow resolving the vibrational fine structure. However, the shape and width of the spectral profiles are strongly determined by both chemical shifts and vibronic effects. In particular, different from photoionization of valence levels, both types of core level spectra do not contain contributions from dihedral modes which are related to the twisting motion of the two phenyl rings. Contrary to naphthalene, C-H stretching modes are significantly enhanced in the core excitation spectra of biphenyl while the contributions from C-C stretching modes are reduced.     

Intermolecular interactions and geometry of non-rigid molecules in weak crystalline complexes: Vibrational spectra of 4,4′-dinitrobiphenyl complexes with biphenyl,biphenyl derivatives and p-terphenyl

Raman spectroscopy is used to study the complexes of 4,4′-dinitrobiphenyl with biphenyl, 4-hydroxybiphenyl, 4-bromobiphenyl and p-terphenyl, which crystallize in a highly unusual geometry. Their phonon spectra at 125 K and 18 K are compared and the effect of isotopic substitution of biphenyl on the phonon spectra of its complex is examined. Internal vibrations of the components in the crystalline complex are compared with those observed in the pure crystals of the components. The results from both phonon and intramolecular vibration studies show that these complexes form in fixed stoichiometries, are governed by geometrical factors, and are stabilized primarily by van der Waals interaction, although other kinds of interactions may provide additional stabilization. The 4,4′-dinitrobiphenyl molecule as well as biphenyl and p-terphenyl are centrosymmetric and remain so when the complexes are cooled from room temperature to 18 K. For biphenyl complex, this conclusion is supported by the observed IR spectra which show mutual exclusion between IR-active and Raman active vibrations. Crystal splitting is observed on the 410 cm^?1 vibration of 4,4′-dinitrobiphenyl. This splitting is attributed to the presence of more than one 4,4′-dinitrobiphenyl molecules in the complex unit.     

Determination of biphenyl in the presence of polyphenyls : Water solubility method

Prior work had shown that the principal products of the pyrolysis of p-terphenyl are biphenyl and certain higher polyphenyls. Since the three terphenyls as well as particular higher polyphenyls are being investigated as heat transfer media for atomic energy reactors, the determination of biphenyl, as a major or minor product of their pyrolysis, becomes of prime importance in order to follow the trend of reaction products.Because of the greater solubility of biphenyl in water, as compared to other polyphenyls, biphenyl is completely extracted from such mixtures by water and can be determined spectrophotometrically in aqueous solution. Effects of temperature, rates of solution, and the presence of polyphenyls were studied. The solubility of biphenyl is about 0.9 mg/100 ml of water, but the suggested working limit in 0.4 mg biphenyl/100 ml of solvent.As little as 0.1% biphenyl in p-terphenyl may be detected and as high as 20% may be determined in higher polyphenyls.     

Inner shell excitation spectroscopy of biphenyl and substituted biphenyls: probing ring-ring delocalization

Quantitative optical oscillator strength spectra for C 1s excitation and ionization of gas-phase biphenyl, decafluorobiphenyl, and 2,2'-bis(bromomethyl)-1,1'-biphenyl have been derived from electron energy loss spectroscopy recorded under electric dipole dominated conditions. The C 1s X-ray absorption spectrum of hexaphenylbenzene has been recorded in the solid state. The C 1s spectral features are interpreted with the aid of ab initio calculations for core excitation of benzene, biphenyl, hexafluorobenzene, and decafluorobiphenyl. A weak feature at 287.7 eV in biphenyl is identified as a C 1s --> pi(deloc) transition, characteristic of ring-ring delocalization. Its intensity and position are shown to be related to the average torsion angle and thus the extent of pi-pi-interaction between adjacent aromatic rings. The effects of perfluoro substitution on core excitation spectra are also characterized and discussed.     

Control and femtosecond time-resolved imaging of torsion in a chiral molecule

We study how the combination of long and short laser pulses can be used to induce torsion in an axially chiral biphenyl derivative (3,5-difluoro-3',5'-dibromo-4'-cyanobiphenyl). A long, with respect to the molecular rotational periods, elliptically polarized laser pulse produces 3D alignment of the molecules, and a linearly polarized short pulse initiates torsion about the stereogenic axis. The torsional motion is monitored in real-time by measuring the dihedral angle using femtosecond time-resolved Coulomb explosion imaging. Within the first 4 picoseconds (ps), torsion occurs with a period of 1.25 ps and an amplitude of 3° in excellent agreement with theoretical calculations. At larger times, the quantum states of the molecules describing the torsional motion dephase and an almost isotropic distribution of the dihedral angle is measured. We demonstrate an original application of covariance analysis of two-dimensional ion images to reveal strong correlations between specific ejected ionic fragments from Coulomb explosion. This technique strengthens our interpretation of the experimental data.     

Intermolecular electrical interactions and the structures and rigidity of cyclic,weakly bonded complexes

Intermolecular torsional potentials have been generated for a number of three- and four-membered cyclic complexes of hydrogen or weakly bonded molecules using a detailed electrical analysis that includes full mutual polarization. The librational rigidity of the complexes correlates well with the strength of the electrical interaction. Trends in the torsional force constants can be understood largely in terms of how dipole and quadrupole interactions are juxtaposed as relative orientations change.     

氢键对分子器件电学特性的影响

利用密度泛函理论和弹性散射格林函数方法,研究了被不同官能团取代后的联苯分子的电输运特性.计算结果表明,由于氢键的影响,使得分子的电子结构发生了变化,特别是对电子在分子结内的跃迁几率影响较大,从而直接影响了分子器件的伏安特性.     

Biphenyl: A stress tensor and vector‐based perspective explored within the quantum theory of atoms in molecules

We use quantum theory of atoms in molecules (QTAIM) and the stress tensor topological approaches to explain the effects of the torsion φ of the C‐C bond linking the two phenyl rings of the biphenyl molecule on a bond‐by‐bond basis using both a scalar and vector‐based analysis. Using the total local energy density H( r _b), we show the favorable conditions for the formation of the controversial H–H bonding interactions for a planar biphenyl geometry. This bond‐by‐bond QTAIM analysis is found to be agreement with an earlier alternative QTAIM atom‐by‐atom approach that indicated that the H–H bonding interaction provided a locally stabilizing effect that is overwhelmed by the destabilizing role of the C‐C bond. This leads to a global destabilization of the planar biphenyl conformation compared with the twisted global minimum. In addition, the H( r _b) analysis showed that only the central torsional C‐C bond indicated a minimum for a torsion φ value coinciding with that of the conventional global energy minimum. The H–H bonding interactions are found to be topologically unstable for any torsion of the central C‐C bond away from the planar biphenyl geometry. Conversely, we demonstrate that for 0.0° < φ < 39.95° there is a resultant increase in the topological stability of the C nuclei comprising the central torsional C‐C bond. Evidence is found of the effect of the H–H bonding interactions on the torsion φ of the central C‐C bond of the biphenyl molecule in the form of the QTAIM response β of the total electronic charge density ρ( r _b). Using a vector‐based treatment of QTAIM we confirm the presence of the sharing of chemical character between adjacent bonds. In addition, we present a QTAIM interpretation of hyperconjugation and conjugation effects, the former was quantified as larger in agreement with molecular orbital (MO) theory. The stress tensor and the QTAIM H atomic basin path set areas are independently found to be new tools relevant for the incommensurate gas to solid phase transition occurring in biphenyl for a value of the torsion reaction coordinate φ ≈ 5°. © 2015 Wiley Periodicals, Inc.     

Ionization from a double bond: rovibronic photoionization dynamics of ethylene, large amplitude torsional motion and vibronic coupling in the ground state of C2H4+

Rotationally resolved pulsed-field-ionization zero-kinetic-energy photoelectron spectra of the X-->X+ transition in ethylene and ethylene-d4 have been recorded at a resolution of 0.09 cm(-1). The spectra provide new information on the large amplitude torsional motion in the cationic ground state. An effective one-dimensional torsional potential was determined from the experimental data. Both C2H4+ and C2D4+ exhibit a twisted geometry, and the lowest two levels of the torsional potential form a tunneling pair with a tunneling splitting of 83.7(5) cm(-1) in C2H4+ and of 37.1(5) cm(-1) in C2D4+. A model was developed to quantitatively analyze the rotational structure of the photoelectron spectra by generalizing the model of Buckingham, Orr, and Sichel [Philos. Trans. R. Soc. London, Ser. A 268, 147 (1970)] to treat asymmetric top molecules. The quantitative analysis of the rotational intensity distributions of allowed as well as forbidden vibrational bands enabled the identification of strong vibronic mixing between the X+ and A+ states mediated by the torsional mode nu(4) and a weaker mixing between the X+ and B+ states mediated by the symmetric CH2 out-of-plane bending mode nu7. The vibrational intensities could be accounted for quantitatively using a Herzberg-Teller-type model for vibronic intensity borrowing. The adiabatic ionization energies of C2H4 and C2D4 were determined to be 84 790.42(23) cm(-1) and 84 913.3(14) cm(-1), respectively.