Spicules and the effect of rigid rods on enclosing membrane tubes

Membrane tubes (spicules) arise in cells, or artificial membranes, in the nonlinear deformation regime due to, e.g., the growth of microtubules, actin filaments, or sickle hemoglobin fibers towards a membrane. We calculate the axial force f exerted by the tube, and its average radius, taking into account steric interactions between the fluctuating membrane and the enclosed rod. We find a smooth crossover of the axial force between f approximately square root of (sigma) and f approximately sigma as the membrane tension sigma increases and the tube radius shrinks. This crossover occurs around the most physiologically relevant membrane tensions. Our work may be important in (i) interpreting experiments in which axial force is related to the tube radius or membrane tension, and (ii) constructing dynamical theories for biopolymer growth in narrow tubes where these fluctuation effects control the tube radius.     

Fluorescence Correlation Spectroscopy (FCS) Analysis of Human Red Blood Cell System

Recent studies have revealed the importance of the lipid micro domain for signal transduction in cell membrane. To analyze the biophysical properties of the lipid micro domain at the single molecule level, we measured the diffusion of fluorescence probe in human red blood cell (RBC) membrane using fluorescence correlation spectroscopy (FCS). The value of diffusion constant of octadecyl rhodamine B chloride (R18), D = 4.7 × 10⁻⁹cm²/s, is close to that of phospholipid molecules in membrane. This indicates that the probed RBC with R18 could be a convenient model for analyzing membrane property under natural conditions. Using this model, we investigated how amyloid beta peptide (A-beta) interacts with plasma membrane. This paper demonstrates that A-beta was inserted into the phospholipid bilayer of the RBC membrane and predicts the existence of the micro domain, lipid raft, on this membrane by the heterologous insertion of A-beta.     

肥皂泡筏中的力律与肥皂泡半径的关系

利用肥皂泡之间的吸引排斥相互作用和Peierls切割粘合方案研究了不同半径泡筏边界上的肥皂泡所受的回复力与位移的关系曲线.计算得到回复力达到最大值的位置与Bragg所获得的结果一致,结合曲线的物理特征,给出一个新的函数形式来描述此力律曲线,从而得到肥皂泡筏中的力律与肥皂泡半径的关系. 关键词： 位错方程 力律 肥皂泡筏     

Theoretical study on the dislocations in the bubble rafts

The core structure of the dislocation in a bubble raft has been evaluated by using the improved P–N equation. The dislocation profile has been obtained explicitly for the bubble radius R=0.296, 0.592, 0.650, 0.888 mm. The results show that the core width of dislocation will increase rapidly when the bubble radius decreases, especially, this trend will become more significant as the radius is more smaller. Our calculated results agree well with the experimental data, and our method can be used to predict the core structure of the dislocation in a bubble raft where bubble-radius is given arbitrarily.     

A New Cooperation Mechanism of Kinesin Motors when Extracting Membrane Tube

Membrane tubes are important functional elements for living cells. Experiments have found that membrane tubes can be extracted from giant lipid vesicles by groups of kinesin. How these motors cooperate in extracting the membrane tube is a very important issue but still unclear so far. In this paper, we propose a cooperation mechanism called two-track-dumbbell model, in which kinesin is regarded as a dumbbell with an end (tail domain) tethered on the fluid-like membrane and the other end (head domain) stepping on the microtubule. Taking account of the elasticity of kinesin molecule and the excluded volume effect of both the head domain and the tail domain of kinesin, which are not considered in previous models, we simulate the growth process of the membrane tube pulled by kinesin motors. Our results indicate that in the case of strong or moderate exclusion of motor tails, the average number of motors pulling the tube can be as high as 9 and thus motors moving along a single microtubule protofilament can generate enough force to extract membrane tubes from vesicles. This result is different from previous studies and may be tested by future experiments.     

A New Cooperation Mechanism of Kinesin Motors when Extracting Membrane Tube

Membrane tubes are important functional elements for riving cells. Experiments have found that membrane tubes can be extracted from giant lipid vesicles by groups of kinesin. How these motors cooperate in extracting the membrane tube is a very important issue but still unclear so far. In this paper, we propose a cooperation mechanism called two-track-dumbbell model, in which kinesin is regarded as a dumbbell with an end （tail domain） tethered on the fluid-like membrane and the other end （head domain） stepping on the microtubule. Taking account of the elasticity of kinesin molecule and the excluded volume effect of both the head domain and the tail domain of kinesin, which are not considered in previous models, we simulate the growth process of the membrane tube pulled by kinesin motors. Our results indicate that in the case of strong or moderate exclusion of motor tails, the average number of motors pulling the tube can be as high as 9 and thus motors moving along a single microtubule protofilament can generate enough force to extract membrane tubes from vesicles. This result is different from previous studies and may be tested by future experiments.     

Impact dynamics for elastic membranes

We study the dynamic response of stretched thin polymeric films following an impact by a rigid sphere. We vary the sphere radius, the impact velocity, and the film tension, and measure the contact time and the maximum deflection of the film during the impact. The response is sensitive to nonlinearities associated with the additional tension provided by the deformation. A physical model at the scaling level is presented. This allows us (i) to understand qualitatively experimental and numerical results and (ii) to present a diagram mapping different possible impact dynamics for membrane systems, which accounts for the interplay between membrane tension, intrinsic modulus, and geometrical factors such as the frame size and the sphere radius.     

Adhesion of fluid vesicles at chemically structured substrates

The adhesion of fluid vesicles at chemically structured substrates is studied theoretically via Monte Carlo simulations. The substrate surface is planar and repels the vesicle membrane apart from a single surface domain γ , which strongly attracts this membrane. If the vesicle is larger than the attractive γ domain, the spreading of the vesicle onto the substrate is restricted by the size of this surface domain. Once the contact line of the adhering vesicle has reached the boundaries of the γ domain, further deflation of the vesicle leads to a regime of low membrane tension with pronounced shape fluctuations, which are now governed by the bending rigidity. For a circular γ domain and a small bending rigidity, the membrane oscillates strongly around an average spherical cap shape. If such a vesicle is deflated, the contact area increases or decreases with increasing osmotic pressure, depending on the relative size of the vesicle and the circular γ domain. The lateral localization of the vesicle's center of mass by such a domain is optimal for a certain domain radius, which is found to be rather independent of adhesion strength and bending rigidity. For vesicles adhering to stripe-shaped surface domains, the width of the contact area perpendicular to the stripe varies nonmonotonically with the adhesion strength.     

Patch coalescence as a mechanism for eukaryotic directional sensing

Eukaryotic cells possess a sensible chemical compass allowing them to orient toward sources of soluble chemicals. The extracellular chemical signal triggers separation of the cell membrane into two domains populated by different phospholipid molecules and oriented along the signal anisotropy. We propose a theory of this polarization process, which is articulated into subsequent stages of germ nucleation, patch coarsening, and merging into a single domain. We find that the polarization time, t{epsilon}, depends on the anisotropy degree through the power law t{epsilon} infinity epsilon{-2}, and that in a cell of radius R there should exist a threshold value epsilon{th} infinity R{-1} for the smallest detectable anisotropy.     

Modeling on ion rejection using membranes comprising ultra-small radii carbon nanotubes

In this paper, we investigate the complete ion rejection using carbon nanotube membranes comprising ultra-small radii nanotubes. Three acceptance radii for a water molecule, a sodium ion and a chloride ion are determined assuming the continuous approximation. Given the acceptance radii, we may confine the scope of the nanotube radius so that only water molecules can pass through but the heavier sodium and chloride ions are repulsed from the nanotube ends. We assume that the collective motion of water molecules inside a sufficiently long nanotube is driven by atomic vibrations so that classical phonon theory might be used to deduce the average water transit time inside the nanotube for ion rejection. We predict that for carbon nanotube membranes comprising nanotubes of radii lying between 3.4 and 3.9 ?, only water molecules will pass through, and sodium and chloride ions will not, which together using phonon theory, we deduce that the smaller the nanotube radius, the lower the average water transit time and the higher the efficiency of the membrane for ion rejection purposes. The present theoretical approach has the merit of rapid computational times and indicates those nanotube radii where future experimental work might be focussed.     

Detection of submicron-sized raft-like domains in membranes by small-angle neutron scattering

Using coarse grained models of heterogeneous vesicles we demonstrate the potential for small-angle neutron scattering (SANS) to detect and distinguish between two different categories of lateral segregation: 1) unilamellar vesicles (ULV) containing a single domain and 2) the formation of several small domains or “clusters” (~10 nm in radius) on a ULV. Exploiting the unique sensitivity of neutron scattering to differences between hydrogen and deuterium, we show that the liquid ordered (lo) DPPC-rich phase can be selectively labeled using chain deuterated dipalymitoyl phosphatidylcholine (dDPPC), which greatly facilitates the use of SANS to detect membrane domains. SANS experiments are then performed in order to detect and characterize, on nanometer length scales, lateral heterogeneities, or so-called “rafts”, in ~30 nm radius low polydispersity ULV made up of ternary mixtures of phospholipids and cholesterol. For 1:1:1 DOPC:DPPC:cholesterol (DDC) ULV we find evidence for the formation of lateral heterogeneities on cooling below 30 °C. These heterogeneities do not appear when DOPC is replaced by SOPC. Fits to the experimental data using coarse grained models show that, at room temperature, DDC ULV each exhibit approximately 30 domains with average radii of ~10 nm.     

Sampling of the NMR time domain along concentric rings

We present a novel approach to sampling the NMR time domain, whereby the sampling points are aligned on concentric rings, which we term concentric ring sampling (CRS). Radial sampling constitutes a special case of CRS where each ring has the same number of points and the same relative orientation. We derive theoretically that the most efficient CRS approach is to place progressively more points on rings of larger radius, with the number of points growing linearly with the radius, a method that we call linearly increasing CRS (LCRS). For cases of significant undersampling to reduce measurement time, a randomized LCRS (RLCRS) is also described. A theoretical treatment of these approaches is provided, including an assessment of artifacts and sensitivity. The analytical treatment of sensitivity also addresses the sensitivity of radially sampled data processed by Fourier transform. Optimized CRS approaches are found to produce artifact-free spectra of the same resolution as Cartesian sampling, for the same measurement time. Additionally, optimized approaches consistently yield fewer and smaller artifacts than radial sampling, and have a sensitivity equal to Cartesian and better than radial sampling. We demonstrate the method using numerical simulations, as well as a 3D HNCO experiment on protein G B1 domain.     

Monitoring membrane rafts in colorectal cancer cells by means of correlative fluorescence electron microscopy (CFEM)

Detergent-resistant membrane (DRM) rafts have been shown to play a pivotal role in regulating key cell biological processes, such as signal transduction, cellular transport and cell survival. The fine structure of membrane rafts are studied using various different imaging approaches and the outcomes are largely dependent on the detection methodology applied. All these microscopy techniques which employ light-, laser- and photon-optics, electrons as well as atomic force probing are characterized on their turn by their strengths and limitations for membrane raft identification. This explains in part the diversity of definitions available to describe these peculiar membrane structures. We present herewith an alternative and uncomplicated microscopy tool to study fluorescently labelled DRMs with information at the transmission electron microscopical level of the same cell, enabling us to obtain a snapshot of the morpho-functional relationships between the cell's interior and DRMs. The proposed approach of correlative fluorescence electron microscopy (CFEM) can therefore be considered as an additional alternative imaging approach to unravel DRM structure–function relationships from micro- to nanometre length scales, from the cell to the molecule.     

Rotating soliton clusters in nonlocal nonlinear media

From the study of the dynamics for the ring-like soliton clusters, we find that there exists a critical value of the ring radius, dcr, for the stationary rotation of the clusters with respect to the beam centre even in the presence of the relatively strong noise, and that the soliton clusters will not rotate but only undergo periodic collisions in the form of simple harmonic oscillator if the ring radius is large enough. We also show that the direction of the rotation can be opposite to the direction of phase gradient when the relative phase difference is within the domain 0 〈 ｜θ｜ 〈 π, while along the direction of phase gradient when the relative phase difference is within the domain π 〈｜θ｜ 〈 2π     

Beta function and Schwinger functions for a many fermions system in one dimension. Anomaly of the fermi surface

We present a rigorous discussion of the analyticity properties of the beta function and of the effective potential for the theory of the ground state of a one dimensional system of many spinless fermions. We show that their analyticity domain as a function of the running couplings is a polydisk with positive radius bounded below, uniformly in, all the cut offs (infrared and ultraviolet) necessary to give a meaning to the formal Schwinger functions. We also prove the vanishing of the scale independent part of the beta function showing that this implies the analyticity of the effective potential and of the Schwinger functions in terms of the bare coupling. Finally we show that the pair Schwinger function has an anomalous long distance behaviour.     

Analytic theory of wall configuration and depinning mechanism in magnetic nanostructure with perpendicular magnetic anisotropy

We present an analytic theory of the domain wall depinning in magnetic nanostructure with perpendicular magnetic anisotropy. The variational principle reveals that the wall is bent in the form of a circular arc which intersects the structure boundaries perpendicularly. The radius is inversely proportional to the magnetic field. With increasing the field the radius shrinks, followed by depinning from the constriction when the arc is not geometrically allowed. The depinning field is proportional to the sine of the constriction angle and the inverse of the constriction width. The validity of the theory is confirmed by comparison with the micromagnetic simulation.     

Morphological phase diagram for lipid membrane domains with entropic tension

Circular domains in phase-separated lipid vesicles with symmetric leaflet composition commonly exhibit three stable morphologies: flat, dimpled, and budded. However, stable dimples (i.e., partially budded domains) present a puzzle since simple elastic theories of domain shape predict that only flat and spherical budded domains are mechanically stable in the absence of spontaneous curvature. We argue that this inconsistency arises from the failure of the constant surface tension ensemble to properly account for the effect of entropic bending fluctuations. Formulating membrane elasticity within an entropic tension ensemble, wherein tension represents the free energy cost of extracting membrane area from thermal bending of the membrane, we calculate a morphological phase diagram that contains regions of mechanical stability for each of the flat, dimpled, and budded domain morphologies.     

Energy of the interaction between membrane lipid domains calculated from splay and tilt deformations

Specific domains, called rafts, are formed in cell membranes. Similar lipid domains can be formed in model membranes as a result of phase separation with raft size may remaining small (～10–100 nm) for a long time. The characteristic lifetime of a nanoraft ensemble strongly depends on the nature of mutual raft interactions. The interaction energy between the boundaries of two rafts has been calculated under the assumption that the thickness of the raft bilayer is greater than that of the surrounding membrane, and elastic deformations appear in order to smooth the thickness mismatch at the boundary. When rafts approach each other, deformations from their boundaries overlap, making interaction energy profile sophisticated. It has been shown that raft merger occurs in two stages: rafts first merge in one monolayer of the lipid bilayer and then in another monolayer. Each merger stage requires overcoming of an energy barrier of about 0.08–0.12 k _BT per 1 nm of boundary length. These results allow us to explain the stability of the ensemble of finite sized rafts.     

Force barriers for membrane tube formation

We used optical tweezers to measure the force-extension curve for the formation of tubes from giant vesicles. We show that a significant force barrier exists for the formation of tubes, which increases linearly with the radius of the area on which the pulling force is exerted. The tubes form through a first-order transition with accompanying hysteresis. We confirm these results with Monte Carlo simulations and theoretical calculations. Whether membrane tubes can be formed in, for example, biological cells, thus depends on the details of how forces are applied.