Chiral crystalline hosts derived from lactic acid.* X-ray crystal structures of optically resolved and racemic host compound 1,1-diphenyl-1,2-propanediol and a 2:1 complex between optically resolved host and 3-picoline

Abstract

The X-ray crystal structures of racemic (1) and S-1,1-diphenyl-1,2-propanediol (2), and of a 2:1 inclusion complex (3) of 2 with 3-picoline are reported. Three different binding schemes characterize the packing of these structures. Only one of the two hydroxy groups (that which is not related to the asymmetric carbon) is involved in O-H…O hydrogen bonds responsible for the formation of dimers and chains in 1 and 2, leaving the other OH group for stabilization of dimers through OH…phenyl interactions in 1 or free of interactions in 2. In the crystal structure of the chiral complex 3, the hydroxy groups link the two independent host molecules, A and B, the 3-picoline guest to the B host molecule, and a remaining one forms H-bonded chains along the c axis.     

Synthesis of para-substituted styrenes

Using double Stille cross-coupling reaction bromo (or chloro)benzylbromide is easily transformed into substituted styrene monomers bearing a wide range of substituents in para position     

Crystal structure of cyclic sulfin- and sulfonamides of the thiazine series: Conformation,intra- and intermolecular interactions

An X-ray crystallographic study of a new compound is performed and the structure of five sulfin- and sulfonamides of the thiazine series is discussed. The conformation of the thiazine ring in all structures (a distorted boat) is stabilized by the intramolecular interaction of the C-H…N type. The nitrogen atom of the thiazine ring has a pyramidal configuration. The geometry of isolated molecules is calculated at density functional theory level (PBE1PBE, 6-31G(d,p)) and compared to that observed in the crystals. In the crystal structures different packing motifs are implemented with the formation of supramolecular associates of different types due to classical hydrogen bonds such as N-H…O.     

Chiral recognition of N-thiophosphorylated thioureas via nickel(ii) coordination assisted by 4-dimethylaminopyridine

Nickel(ii) complexes were synthesized using chiral N-thiophosphorylated thioureas as the starting compounds and 4-dimethylaminopyridine as a co-ligand. The reaction with racemic thiourea afforded homochiral complexes due to the distortion of the nickel coordination. The unsaturated coordination sphere of nickel ions results in the formation of supramolecular homochiral 1D chains in the crystal through steric key—lock interactions between adjacent molecules. Conformational flexibility of the ligands is responsible for disorder of molecules in the crystals and the occurrence of polymorphs.

     

Homochiral oligopeptides generated by induced "mirror symmetry breaking" lattice-controlled polymerizations in racemic crystals of phenylalanine N-carboxyanhydride

The formation of diastereoisomeric libraries of oligopeptides through the heterogeneous polymerization of racemic crystals of phenylalanine N-carboxyanhydride (PheNCA) is reported. The diastereoisomeric compositions of the oligopeptides formed on polymerization of (R,S) crystals incorporating the deuterium-tagged S enantiomer were determined by MALDI-TOF mass spectrometry. The racemic mixtures of the oligopeptides longer than pentamers are represented primarily by diastereoisomers of homochiral sequence and with peptides containing only one heterochiral repeating unit. A mechanism comprising the following three sequential steps to account for this unusual observation is proposed: 1) formation of dimers and trimers at a partially damaged liquid/solid interface, 2) chain propagation that takes place within the bulk of the crystal through a lattice-controlled "zipper-like" mechanism between homochiral molecules arranged in a head-to-tail motif to yield crystalline antiparallel beta-sheets of alternating oligopeptide chains of homochiral sequence of opposite handedness, and 3) enantiomeric cross-inhibition that results in chain termination. Induced desymmetrization of the racemic mixtures of the formed peptides was achieved by the polymerization of the mixed quasi-racemic crystals of (R)-PheNCA, ((S)-PheNCA), and (S)-ThieNCA (3-(2-thienyl)-alanine N-carboxyanhydride) of various compositions. These experiments resulted in the formation of nonracemic libraries of oligopeptides composed of homochiral chains of (R)-Phe and copolymers of randomly distributed (S)-Phe and (S)-Thie sequences. From these findings, we propose a stochastic model for the generation of libraries of nonracemic mixtures of oligopeptides from the polymerization of host (R,S)-PheNCA with racemic mixtures of other guest NCA amino acids dissolved in limited quantities in the crystal.     

A new synthesis, including asymmetric synthesis, of spiro[4.n]alkenones from three components: cyclic ketones, chloromethyl p-tolyl sulfoxide, and acetonitrile; and a formal total synthesis of racemic acorone

1-Chlorovinyl p-tolyl sulfoxides were synthesized from several kinds of cyclic ketones and chloromethyl p-tolyl sulfoxide in good yields. Treatment of the 1-chlorovinyl p-tolyl sulfoxides with cyanomethyllithium at −78°C to room temperature gave spirocyclic enaminonitriles in high yields. Acidic treatment of the enaminonitriles afforded spiro[4.n]alkenones in good yields. By using an unsymmetrical cyclic ketone, α-tetralone, and optically active chloromethyl p-tolyl sulfoxide, this procedure afforded enantiomerically pure spiro[4.5]decenone in good yield with excellent asymmetric induction from the sulfoxide chiral center. By using this method a formal total synthesis of a racemic spirocyclic sesquiterpene, acorone, was realized.     

Oxidation of E,E‐bis(3‐bromo‐1‐chloro‐1‐propen‐2‐yl) chalcogenides and use of E,E‐bis(3‐bromo‐1‐chloro‐1‐propen‐2‐yl)sulfone in heterocyclization with primary amines

Oxidation of E,E‐bis(3‐bromo‐1‐chloro‐1‐propen‐2‐yl) sulfide and selenide with hydrogen peroxide in chloroform/acetic acid or acetic acid affords previously unknown E,E‐bis(3‐bromo‐1‐chloro‐1‐propen‐2‐yl) sulfoxide, selenoxide, and sulfone. The reaction of E,E‐bis(3‐bromo‐1‐chloro‐1‐propen‐2‐yl) sulfone with primary amines in ethanol in the presence of NaHCO₃ or Na₂CO₃ is found to lead not only to heterocyclization but also to alcoholysis of the chloromethylidene groups in the intermediate bis(chloromethylidene) derivatives of thiomorpholine‐1,1‐dioxides to afford N‐organyl‐2(E),6(E)‐bis(ethoxymethylidene) thiomorpholine‐1,1‐dioxides as final products.     

New access to racemic β-amino acids

A general simple procedure having the potential for large scale preparations of racemic β³-amino acids has been developed. The procedure involves base-catalyzed Michael-type addition of sodium diethyl malonate to N-Boc-α-amidoalkyl-p-tolyl sulfones in tetrahydrofuran. Hydrolysis of the adducts by refluxing with 6 M aqueous hydrochloric acid affords β³-amino acid hydrochlorides in high yield and excellent purity.     

(3+3)-Cyclocondensation of the enantiopure and racemic forms of trans-1,2-diaminocyclohexane with terephthaldehyde. Formation of diastereomeric molecular triangles and their stereoselective solid-state stacking into microporous chiral columns

The non-templated reaction of both the homochiral as well as the racemic form of trans-1,2-diaminocyclohexane with terephthaldehyde affords (3+3)-cyclocondensed molecular triangles in practically quantitative yields. The configuration of the diastereomeric products resulting in the individual reactions has been determined by ¹H and ¹³C NMR spectroscopy. Unambiguous proof has been obtained by X-ray crystal structure analysis of both alternative diastereomers, revealing also a stereoselective stacking of the triangles into microporous chiral columns.     

Relationships between NMR shifts and interaction energies in biphenyls,alkanes, aza-alkanes,and oxa-alkanes with X─H…H─Y and X─H…Z (X,Y = C or N; Z = N or O) hydrogen bonding

Hydrogen–hydrogen C─H^…H─C bonding between the bay-area hydrogens in biphenyls, and more generally in congested alkanes, very strained polycyclic alkanes, and cis-2-butene, has been investigated by calculation of proton nuclear magnetic resonance (NMR) shifts and atom–atom interaction energies. Computed NMR shifts for all protons in the biphenyl derivatives correlate very well with experimental data, with zero intercept, unit slope, and a root mean square deviation of 0.06 ppm. For some congested alkanes, there is generally good agreement between computed values for a selected conformer and the experimental data, when it is available. In both cases, the shift of a given proton or pair of protons tends to increase with the corresponding interaction energy. Computed NMR shift differences for methylene protons in polycyclic alkanes, where one is involved in a very short contact (“in”) and the other is not (“out”), show a rough correlation with the corresponding C─H^…H─C exchange energies. The “in” and “in,in” isomers of selected aza- and diaza-cycloalkanes, respectively, are X─H^…H─N hydrogen bonded, whereas the “out” and “in,out” isomers display X─H^…N hydrogen bonds (X = C or N). Oxa-alkanes and the “in” isomers of aza–oxa-alkanes are X─H^…O hydrogen bonded. There is a very good general correlation, including both N─H^…H─Y (Y = C or N) and N─H^…Z (Z = N or O) interactions, for NH proton shifts against the exchange energy. For “in” CH protons, the data for the different C─H^…H─Y and C─H^…Z interactions are much more dispersed and the overall shift/exchange energy correlation is less satisfactory.     

Synthesis of N‐Benzylated Anilines from the Reaction of Anilines and Benzyl Chloroformate

Abstract

Reactions of benzyl chloroformate with a series of substituted anilines produced N‐carbobenzyloxy “CBZ” products along with the unexpected N‐benzylated “Bn” compounds. Reaction of aniline, 1a, gave the CBZ, or 2a, and Bn, or 3a, products in 29% and 14% yield, respectively. For 2‐nitro‐, 2‐bromo‐, and 2‐bromo‐5‐nitroanilines, the N‐benzylated compounds were produced exclusively. However, 2‐methoxy‐, 4‐bromo, 4‐iodo, and 4‐ethylanilines gave mainly CBZ products. Other compounds reported in this study gave mixtures of the two products. For 4‐chloro‐3‐nitroaniline, in addition to the Bn and CBZ products (53% and 14% yield, respectively), a N,N‐dibenzylated product was isolated in 27% yield. Collectively, the results indicated that electron‐withdrawing groups, particularly at the ortho position, directed the formation of Bn compounds, whilst electron‐donating groups, especially at the ortho and para positions, favored the synthesis of CBZ products.     

μ<Subscript>2</Subscript>-Oxobis[(aroxo)tris(<Emphasis Type="Italic">para</Emphasis>-tolyl)antimony]: Synthesis and Structure

µ₂-Oxobis[(2,4,6-tribromophenoxo)tris(para-tolyl)antimony] (I), µ₂-oxobis[(2,3,4,5,6-pentachlorophenoxo) tris(para-tolyl)antimony] (II), and µ₂-oxobis(2,4-dinitrophenoxo)tris(para-tolyl)antimony] (III) have been synthesized with high yields by the reaction of tris(para-tolyl)antimony with 2,4,6-tribromo-, 2,3,4,5,6-pentachloro-, and 2,4-dinitrophenol, respectively, in ether in the presence of tert-butylhydroperoxide. The Sb atoms in complexes I, II, and III have a distorted trigonal bipyramidal coordination with the aroxyl ligands and the bridging oxygen atom in axial positions. The central Sb–O–Sb moiety in molecules of complexes I–III has an angular structure.     

The solid‐state structure of the β‐blocker metoprolol: a combined experimental and in silico investigation

Metoprolol {systematic name: (RS)‐1‐isopropylamino‐3‐[4‐(2‐methoxyethyl)phenoxy]propan‐2‐ol}, C₁₅H₂₅NO₃, is a cardioselective β₁‐adrenergic blocking agent that shares part of its molecular skeleton with a large number of other β‐blockers. Results from its solid‐state characterization by single‐crystal and variable‐temperature powder X‐ray diffraction and differential scanning calorimetry are presented. Its molecular and crystal arrangements have been further investigated by molecular modelling, by a Cambridge Structural Database (CSD) survey and by Hirshfeld surface analysis. In the crystal, the side arm bearing the isopropyl group, which is common to other β‐blockers, adopts an all‐trans conformation, which is the most stable arrangement from modelling data. The crystal packing of metoprolol is dominated by an O—H…N/N…H—O pair of hydrogen bonds (as also confirmed by a Hirshfeld surface analysis), which gives rise to chains containing alternating R and S metoprolol molecules extending along the b axis, supplemented by a weaker O…H—N/N—H…O pair of interactions. In addition, within the same stack of molecules, a C—H…O contact, partially oriented along the b and c axes, links homochiral molecules. Amongst the solid‐state structures of molecules structurally related to metoprolol deposited in the CSD, the β‐blocker drug betaxolol shows the closest analogy in terms of three‐dimensional arrangement and interactions. Notwithstanding their close similarity, the crystal lattices of the two drugs respond differently on increasing temperature: metoprolol expands anisotropically, while for betaxolol, an isotropic thermal expansion is observed.     

The role of different nonspecific interactions and halogen contacts in the crystal structure organization of 5‐chloroisatoic anhydride

The crystal structure of 6‐chloro‐2,4‐dihydro‐1H‐3,1‐benzoxazine‐2,4‐dione (5‐chloroisatoic anhydride), C₈H₄ClNO₃, has been determined and analysed in terms of connectivity and packing patterns. The compound crystallizes in the noncentrosymmetric space group Pna2₁ with one molecule in the asymmetric unit. The role of different weak interactions is discussed with respect to three‐dimensional network organization. Molecules are extended into one‐dimensional helical arrangements, making use of N—H…O hydrogen bonds and π–π interactions. The helices are further organized into monolayers via weak C—H…O and lone pair–π interactions, and the monolayers are packed into a noncentrosymmetric three‐dimensional architecture by C—Cl…π interactions and C—H…Cl and Cl…Cl contacts. A Hirshfeld surface (HS) analysis was carried out and two‐dimensional (2D) fingerprint plots were generated to visualize the intermolecular interactions and to provide quantitative data for their relative contributions. In addition, tests of the antimicrobial activity and in vitro cytotoxity effects against fitoblast L929 were performed and are discussed.     

Design of two series of 1:1 cocrystals involving 4‐amino‐5‐chloro‐2,6‐dimethylpyrimidine and carboxylic acids

Two series of a total of ten cocrystals involving 4‐amino‐5‐chloro‐2,6‐dimethylpyrimidine with various carboxylic acids have been prepared and characterized by single‐crystal X‐ray diffraction. The pyrimidine unit used for the cocrystals offers two ring N atoms (positions N1 and N3) as proton‐accepting sites. Depending upon the site of protonation, two types of cations are possible [Rajam et al. (2017). Acta Cryst. C 73 , 862–868]. In a parallel arrangement, two series of cocrystals are possible depending upon the hydrogen bonding of the carboxyl group with position N1 or N3. In one series of cocrystals, i.e. 4‐amino‐5‐chloro‐2,6‐dimethylpyrimidine–3‐bromothiophene‐2‐carboxylic acid (1/1), 1 , 4‐amino‐5‐chloro‐2,6‐dimethylpyrimidine–5‐chlorothiophene‐2‐carboxylic acid (1/1), 2 , 4‐amino‐5‐chloro‐2,6‐dimethylpyrimidine–2,4‐dichlorobenzoic acid (1/1), 3 , and 4‐amino‐5‐chloro‐2,6‐dimethylpyrimidine–2‐aminobenzoic acid (1/1), 4 , the carboxyl hydroxy group (–OH) is hydrogen bonded to position N1 (O—H…N1) of the corresponding pyrimidine unit (single point supramolecular synthon). The inversion‐related stacked pyrimidines are doubly bridged by the carboxyl groups via N—H…O and O—H…N hydrogen bonds to form a large cage‐like tetrameric unit with an R₄²(20) graph‐set ring motif. These tetrameric units are further connected via base pairing through a pair of N—H…N hydrogen bonds, generating R₂²(8) motifs (supramolecular homosynthon). In the other series of cocrystals, i.e. 4‐amino‐5‐chloro‐2,6‐dimethylpyrimidine–5‐methylthiophene‐2‐carboxylic acid (1/1), 5 , 4‐amino‐5‐chloro‐2,6‐dimethylpyrimidine–benzoic acid (1/1), 6 , 4‐amino‐5‐chloro‐2,6‐dimethylpyrimidine–2‐methylbenzoic acid (1/1), 7 , 4‐amino‐5‐chloro‐2,6‐dimethylpyrimidine–3‐methylbenzoic acid (1/1), 8 , 4‐amino‐5‐chloro‐2,6‐dimethylpyrimidine–4‐methylbenzoic acid (1/1), 9 , and 4‐amino‐5‐chloro‐2,6‐dimethylpyrimidine–4‐aminobenzoic acid (1/1), 10 , the carboxyl group interacts with position N3 and the adjacent 4‐amino group of the corresponding pyrimidine ring via O—H…N and N—H…O hydrogen bonds to generate the robust R₂²(8) supramolecular heterosynthon. These heterosynthons are further connected by N—H…N hydrogen‐bond interactions in a linear fashion to form a chain‐like arrangement. In cocrystal 1 , a Br…Br halogen bond is present, in cocrystals 2 and 3 , Cl…Cl halogen bonds are present, and in cocrystals 5 , 6 and 7 , Cl…O halogen bonds are present. In all of the ten cocrystals, π–π stacking interactions are observed.     

From racemic compounds through metastable to stable racemic conglomerates: crystallization features of chiral halogen and cyano monosubstituted phenyl glycerol ethers

All ortho-substituted Cl, Br, I, and CN phenyl glycerol ethers crystallize as racemic conglomerates, whereas meta- and para-derivatives constitute racemic compounds in the solid state. Only meta-halogen-substituted phenyl glycerol ethers, alongside the thermodynamically preferential heterochiral racemic compound phase, reveal the simultaneous existence of a conglomerate phase; the last state is metastable and turns into a stable racemic compound just in the crystalline phase.     

Similarity in structures of racemic and enantiomeric ibuprofen sodium dihydrates

The crystal structures of two ibuprofen sodium dihydrates, racemic sodium (RS)‐2‐(4‐isobutylphenyl)propanoate dihydrate or (RS)‐NaIBDH, Na⁺·C₁₃H₁₇O₂⁻·2H₂O, and enantiomeric sodium (S)‐2‐(4‐isobutylphenyl)propanoate dihydrate or (S)‐NaIBDH, Na⁺·C₁₃H₁₇O₂⁻·2H₂O, have been determined in the space groups P and P1, respectively. The unit cells of the two triclinic structures have similar lattice parameters and cell volumes. The constituent ions have similar coordination environments, but differ slightly in their hydrogen‐bonding inter­actions. The dominance of the inter­actions between the O atoms and the Na⁺ cations explains the structural similarity of these two structures, despite the fact that one is heterochiral while the other is homochiral.     

Crystallization of chiral compounds. 1. Spectroscopic,thermochemical, and crystallographic investigation of homochiral and racemic glycidyl p-toluenesulfonate

Crystalline specimens of homochiral and racemic glycidyl p-toluenesulfonate were studied by IR spectroscopy, differential scanning calorimetry, and X-ray diffraction analysis. The melting phase diagram of glycidyl p-toluenesulfonate was constructed. The stacking effect in the crystals of the racemic sulfonate is responsible for a more dense molecular packing, with the result that a heterochiral type of crystallization becomes more favorable.     

Metallation reactions. Part 35: A change of the regiochemistry in the metallation of (alkylthio)arenes

The metallation reaction of bromo(alkylthio)benzenes is described. The results show the complementarity of these reactions with the metal-hydrogen exchange reaction. In fact, monometallation of bromo(methylthio)benzenes afforded products substituted in para or meta or ortho to the thioethereal function while bimetallation led to αS,para, αS,meta and αS,ortho disubstituted products. Analogously, the monometallation of 4-bromo-(isopropylthio)benzene afforded para-monosubstituted and ortho,para-disubstituted products.     

A comparison of the properties of methacrylate polymers derived from racemic and homochiral monomers containing a trifluoromethyl group at a tertiary stereogenic centre

Three homochiral CF₃ containing methacrylate esters have been prepared, and polymerised with butyllithium at -78°C. Melting points, gel-permeation chromatography, differential scanning calorimetry and X-ray powder diffraction analyses of the resulting polymers have been compared to those of their racemic counterparts. It is clear that the homochiral monomers give rise to largely crystalline methacrylates whereas the racemic monomers generate amorphous materials.