Synthesis and binding properties of carboxylphenyl-modified calix[4]arenes and cytochrome c

Two novel carboxylphenyl-modified calix[4]arenes, tetrakis-carboxylphenylcalix[4]arene (TCPC) and 1,3-bis-carboxylphenylcalix[4]arene (BCPC), as well as a corresponding analogue for comparison, tetrakis-phenylcalix[4]arene (TPC), have been synthesized by palladium-catalyzed Suzuki cross-coupling of arylboronic acid and tetrabromocalix[4]arene as a key step. The binding properties of these calix[4]arene derivatives with bovine heart cytochrome c (cyt c) in dimethylformamide (DMF) was investigated by fluorescence spectroscopy. The binding affinity in the order of TCPC > BCPC ? TPC reflects a clear dependence on the number of carboxyl ligating groups attached onto a receptor and suggests the electrostatic force may be the predominant factor driving the complexing process. The stable 1:1 complexes of TCPC and BCPC with cyt c were evidenced with the binding constants of 3.15 × 10⁶ and 5.85 × 10⁵ L mol⁻¹, respectively. Due to a large overlap between the emission spectrum of TCPC and the absorption spectrum of cyt c, and a short interaction distance (estimated to be 5.6 nm) between them, the fluorescence quenching of TCPC upon complexation with cyt c is attributed to an efficient energy transfer.     

Direct electrochemistry of cytochrome c on a phosphonic acid terminated self-assembled monolayers

The direct electrochemistry of cytochrome c (cyt c) on a gold electrode modified with 3-mercaptopropylphosphonic acid [HS-(CH₂)₃-PO₃H₂, MPPA] self-assembled monolayers (SAMs) was for the first time investigated. Electrochemical measurements and surface-enhanced infrared absorption spectroscopic reveal that the adsorption kinetics of cyt c on the MPPA-SAMs is very fast (saturation adsorption is completed within 5 s) and the immobilized cyt c molecules retain their native secondary protein structure. The nature of interaction between cyt c and -PO₃H₂ groups is mainly the electrostatic interaction. The direct electrochemistry of the immobilized cyt c on the -PO₃H₂ terminated SAMs with short chain is nearly reversible. Its formal potential (E⁰′ = 18 ± 3 mV vs. SCE) is very close to that of cyt c in an aqueous solution (E⁰′ = 18-22 mV vs. SCE). In addition, the electron transfer rate of cyt c immobilized on -PO₃H₂ terminated SAMs is relatively slow as compared to -SO₃H and -COOH terminated SAMs, indicating excess negative charge density on the SAMs surface will decrease the electron transfer rate of cyt c.     

Dominant factors affecting extraction behavior of amino compounds by a calix[6]arene carboxylic acid derivative

A calix[6]arene carboxylic acid derivative was utilized as an extractant for various amino compounds including amino acids. The host compound exhibited a high extractability compared to that of commercially available extractants such as di(2-ethylhexyl)phosphoric acid (D2EHPA). The important factors for amino acid extraction were found to be its cyclic structure and its cavity size, the functional carboxylic groups, and the length of the alkyl chains. The hydrophobicity and the ionic property of guest molecules also affect the extraction efficiency. Calix[6]arene forms a stable complex with a guest molecule by entrapping it into the cavity. The molecular geometries of calixarene before and after extraction were also discussed using computational calculations with the PM3 type of semi-empirical method.     

Electrochemical study of gelatin as a matrix for the immobilization of horse heart cytochrome c

The aim of this paper is to emphasize the strength of gelatin as a stable matrix for redox enzymes. Cyclic voltammetry has been applied for a detailed electrochemical study of horse heart cytochrome c (HHC) entrapped in a gelatin matrix immobilized on a gold electrode. The influence of the HHC concentration, the mass percentage of the gelatin and the nature of the gelatin on the electrochemical behaviour of HHC have been described in detail. In addition, attenuated total reflection infrared (ATR-IR) spectroscopy was used to prove the immobilization on a qualitative and conformational level. The thickness of the gelatin film was determined using a non-contact optical profiler. These results open up new perspectives in the development of stable, biocompatible matrices for redox enzymes. The latter has its relevance in the field of biosensor development.     

Synthesis and characterization of 9,9-dialkylfluorene capped benzo[c]thiophene/benzo[c]selenophene analogs as potential OLEDs

The synthesis of soluble benzo[c]thiophene analogs capped with 9,9-dialkylfluorene at one end is described.     

Synthesis of 1,3-diarylbenzo[c]selenophenes

For the first time, syntheses of 1,3-diarylbenzo[c]selenophenes are reported involving a selenium transfer reaction of keto-alcohol/benzo[c]furan using Woollins reagent.     

A bis-histidine-ligated unfolded cytochrome c immobilized on anionic SAM shows pseudo-peroxidase activity

Urea-unfolded yeast iso-1-cytochrome c electrostatically adsorbed on a gold electrode coated with an anionic self-assembled monolayer yields a heme-mediated electrocatalytic reduction of H₂O₂ (pseudo-peroxidase activity). Under the same conditions, native cytochrome c is inactive. In the unfolded protein, the Met80 heme iron ligand is replaced by a histidine residue yielding a bis-His-ligated form. H₂O₂ electrocatalysis occurs with an efficient mechanism likely involving direct H₂O₂ interaction with the iron(II) center and formation of a transient ferryl group. Comparison of the catalytic activity of a few urea-unfolded single and double Lys-to-Ala variants shows that the kinetic affinity of H₂O₂ for the heme iron and k_cat of the bis-His-ligated form are strongly affected by the geometry of protein adsorption, controlled by specific surface lysine residues.     

Selective extraction and recovery of cytochrome c by liquid-liquid extraction using a calix[6]arene carboxylic acid derivative

Recently, we reported that a calix[6]arene carboxylic acid derivative can selectively extract the lysine-rich protein cytochrome c by interacting with amino groups on the protein surface. In the present article, quantitative extraction and recovery of cytochrome c using this calix[6]arene carboxylic acid derivative are described. Both adjustment of the pH under acidic conditions and addition of an alcohol are necessary to strip the extracted protein from an organic solution to an aqueous solution. Separation of cytochrome c and lysozyme using the calix[6]arene was achieved under the optimal conditions. In the forward extraction stage, 93% of the cytochrome c was extracted, while lysozyme remained in the solution. In the subsequent stripping stage, the extracted cytochrome c was quantitatively recovered in an aqueous solution. Finally, separation of these proteins, which have similar molecular weights and isoelectric points, was accomplished.     

Synthesis and characterization of 1,3-diarylbenzo[c]selenophenes

A series of 1,3-diarylbenzo[c]selenophenes (symmetrical/unsymmetrical) have been synthesized involving a selenium transfer reaction of keto-alcohol/benzo[c]furan using Woollins reagent. The optical and electrochemical studies of these diarylbenzo[c]selenophenes are correlated with their structures.     

Superoxide sensor based on cytochrome c immobilized on mixed-thiol SAM with a new calibration method

Cytochrome c was immobilized on a mixed-thiol (mercaptoundecanoic acid/mercaptoundecanol) modified gold electrode (MUA:MU/cyt c electrode). Characterization of the cyt c electrode showed a quasi-reversible, electrochemical redox behavior with a formal potential of −13±5 mV (versus Ag/AgCl) for the surface adsorbed protein and 3±5 mV for covalently immobilized cyt c. The heterogeneous electron transfer rate constants were determined to be about 70 and 40 s⁻¹ for both states of the protein, respectively. They were found to be significantly higher than those of pure MUA-modified cyt c electrodes (MUA/cyt c electrodes). The interaction of superoxide radicals (O₂⁻) with the (MUA:MU)/cyt c electrode was characterized and used for an amperometric O₂⁻ detection. The influence of H₂O₂ and uric acid on the sensor signal was investigated. The sensitivity of the (MUA:MU)/cyt c electrode to O₂⁻ was significantly improved compared with that of the MUA/cyt c electrode. Based on a kinetic model for the superoxide detection system, a new calibration method was established. This simple and fast method used the spontaneous dismutation of KO₂ and was compared with the enzymatic superoxide generation system using xanthine oxidase.     

Synthesis of 1,3-disubstituted benzo[c]thiophene analogs containing benzo[b]thiophene/benzo[b]pyrrole

The synthesis of 1,3-disubstituted benzo[c]thiophene analogs incorporating benzo[b]thiophene/benzo[b]pyrrole units is described.     

Differential scanning calorimetric study of the molten globule state of cytochrome c induced by sodium n-dodecyl sulfate

The molten globule (MG) state, a compact denatured state with a significantly native-like secondary structure but a largely flexible and disordered tertiary structure, has been proposed to be a major intermediate of protein folding. To explore another approach for characterizing the MG state, sodium dodecyl sulfate (SDS) induced formation of the MG state of horse cytochrome c at pH 2 was studied by circular dichroism, visible spectroscopy, isothermal titration calorimetry (ITC) and differential scanning calorimetry (DSC). These techniques confirmed that the addition of SDS to acid-unfolded state of cytochrome c induced the MG state. Although, the DSC thermal denaturation of cytochrome c was always calorimetrically irreversible, the MG state induced by SDS at low concentrations showed a reversible profile. The spectroscopic properties demonstrated that the hydrophobic tail of SDS utilized the hydrophobic contribution to stabilizing the heme conformation at MG state in cytochrome c. This would be the main reason of thermal profile reversibility of MG state in cytochrome c. The reversibility of DSC thermogram would allow its deconvolution and analysis of the energetic domains for this protein.     

Synthesis of 1,3-diaryl benzo[c]thiophenes

An array of 1,3-diarylbenzo[c]thiophenes has been synthesized via the ring opening of lactones followed by thionation using Lawesson’s reagent.     

Preparation of p-nitrocalix[n]arene methyl ethers via ipso-nitration and crystal structure of tetramethoxytetra-p-nitrocalix[4]arene

Nitration of p-tert-butylcalix[n]arene methyl ethers under a variety of reaction conditions has been examined. It has been determined that amongst different nitration procedures adopted (AlCl₃/KNO₃, HNO₃/CH₃COOH, HNO₃/(CH₃CO)₂O, cerium(IV) ammonium nitrate/CH₃COOH), ipso-nitration with CH₃COOH/HNO₃ gives best yields of p-nitrocalixarenes and work up conditions. ipso-Nitration of tetramethoxytetra-p-tert-butylcalix[4]arene gives tetramethoxytetra-p-nitrocalix[4]arene as triclinic crystals with space group with a=9.102(3) Å, b=11.623(3) Å, c=18.368(3) Å and α=77.99(2)°, β=81.10(2)°, γ=73.37(2)°. Its conformation is partial cone and it forms an exocylic 1:1 complex with DMF.     

Preparation of CTA-based polymer inclusion membrane using calix[4]arene derivative as a carrier for Cr(VI) transport

In this work, the transport of Cr(VI) ions from an aqueous donor phase solution to an acceptor phase that contained an acetic acid/ammonium acetate buffer at pH 5 through a polymer inclusion membrane (PIM) containing p-tert-butylcalix[4]arene amine derivative as carrier was studied. The Cr(VI) passed through a PIM comprised of cellulose triacetate as a support and 2-NPOE as a plasticizer. The transport efficiency of Cr(VI) was studied under various experimental conditions, such as effect of carrier concentration, acceptor phase pH, type of plasticizer in the membrane, stirring rate and membrane thickness. The kinetic parameters were calculated as rate constant (k), permeability coefficient (P), and flux (J). The transport efficiency of Cr(VI) was observed to be 95.07 % after 10 h under optimized conditions. The prepared PIM was characterized with Fourier transform infrared spectroscopy and the atomic force microscopy techniques as well as with contact angle measurements. This is an effective method for the removal of Cr(VI) which is toxic for human body and environment from the waste water.     

Synthesis and characterization of fluorene tethered benzo[c]thiophene/benzo[c]selenophene analogs

Synthesis of 9,9-dialkyl/diarylfluorene based benzo[c]thiophene/benzo[c]selenophenes is presented. The synthesis of benzo[c]thiophene analogs is also realized with fluorene containing one or two thiophene units. The optical and electrochemical studies of fluorenyl benzo[c]heterocycles are correlated with their structures.     

A fluorescence turn-on method for real-time monitoring of protease activity based on the electron transfer between a fluorophore labeled oligonucleotide and cytochrome c

A new continuous fluorescence turn-on assay for protease activity and inhibitor screening has been developed. A fluorophore labeled single stranded DNA (FAM-DNA) and cytochrome c (cyt c) were employed. The fluorescence of the FAM-DNA was efficiently quenched when binding to cyt c, through the electron transfer between the FAM fluorophore and the heme cofactor of cyt c. In the presence of a protease, such as trypsin, cyt c was digested into small peptide fragments. The FAM-DNA was released, which resulted in the recovery of the FAM fluorescence. The rate of the cyt c digestion could be reduced via the addition of an inhibitor. As a result, reduced degree of the fluorescence recovery was obtained. The limit of detection of our assay is 1 nM trypsin and the IC₅₀ values are 3.23 μg mL⁻¹ and 0.303 μg mL⁻¹ for the inhibitor from egg white and the inhibitor from soybean, respectively. Our method could be used for the sensing of protease activity for various biochemical applications, and for the screening of protease inhibitors as drugs for the treatment of various related diseases.     

Synthesis and characterization of benzo[c]thiophene analogs incorporating benzo[b]thiophene/1-hexylindole/benzo[b]furan

Synthesis of 1,3-disubstituted benzo[c]thiophene analogs incorporating heterocycles such as benzo[b]thiophene/1-hexylindole/benzo[b]furan and thiophene units is described. Optical and electrochemical studies of the benzo[c]thiophene analogs are also reported.     

Redox-active metal(II) complexes of sterically hindered phenolic ligands: Antibacterial activity and reduction of cytochrome c

The synthesis and physico-chemical characterization of Fe(II) and Mn(II) complexes of 4,6-di-tert-butyl-3[(2-hydroxyethyl)sulphanyl]-1,2-dihydroxybenzene (HL^I) and 2-amino-4,6-di-tert-butylphenol (HL^II) were carried out. Antibacterial activity of the Co(II), Fe(II) and Mn(II) complexes was evaluated in comparison with Cu(II) complexes and three common antibiotics; it was found to follow the order: (1) Сu(L^I)₂ > Сo(L^I)₂ > Fe(L^I)₂ ? Mn(L^I)₂ > HL^I; (2) Сu(L^II)₂ > Сo(L^II)₂ > HL^II > Fe(L^II)₂ ? Mn(L^II)₂; and their reducing ability (determined electrochemically) followed the same order. Spectrophotometric investigation was carried out in order to estimate the rate of the reduction of bovine heart сytochrome c with the ligands and their metal(II) complexes. NADPH:cytochrome P450-reductase was found to increase the rate of сytochrome c reduction with HL^I and HL^II ligands, while adrenodoxin in couple with NAD(P)H: adrenodoxin reductase had no substantial effect thereon. It was shown that the reduction of сytochrome c with these compounds cannot be related solely to the facility of their oxidation оr ionization.