Influence of DNA structure on the reactivity of the guanine radical cation

Oxidative damage of DNA via radical cation formation is a common cause of mutagenesis, cancer and of the physiological changes associated with aging. By using state-of-the-art ab initio molecular dynamics simulations, we study the mechanism that guides the first steps of this process. In the mechanism proposed here, guanine, which among the bases has the lowest oxidation potential, and the phosphate backbone play a crucial role. We found that the rate limiting step is the water protolysis. We illuminate the role of the local environment in considerably lowering the barrier. Of particular relevance in this respect is the role of the phosphate backbone.     

Understanding reactivity patterns of the dialkylaniline radical cation

N,N-Dimethylaniline and N,N-diethylaniline react with Cu2+ to form the corresponding amine radical cations. The radical cations were characterized by their absorption spectra. In the absence of any nucleophiles, the radical cations dimerize to give tetraalkylbenzidines, and this reaction can be monitored by absorption spectroscopy. In the presence of nucleophiles such as Cl[negative in circle], Br[negative in circle], or SCN[negative in circle], the radical cations undergo nucleophilic substitution to give para-substituted dialkylanilines in good yields.     

Structure and reactivity of the cysteine methyl ester radical cation

The structure and reactivity of the cysteine methyl ester radical cation, CysOMe^.+, have been examined in the gas phase using a combination of experiment and density functional theory (DFT) calculations. CysOMe^.+ undergoes rapid ion–molecule reactions with dimethyl disulfide, allyl bromide, and allyl iodide, but is unreactive towards allyl chloride. These reactions proceed by radical atom or group transfer and are consistent with CysOMe^.+ possessing structure 1 , in which the radical site is located on the sulfur atom and the amino group is protonated. This contrasts with DFT calculations that predict a captodative structure 2 , in which the radical site is positioned on the α carbon and the carbonyl group is protonated, and that is more stable than 1 by 13.0 kJ mol^?1. To resolve this apparent discrepancy the gas‐phase IR spectrum of CysOMe^.+ was experimentally determined and compared with the theoretically predicted IR spectra of a range of isomers. An excellent match was obtained for 1 . DFT calculations highlight that although 1 is thermodynamically less stable than 2 , it is kinetically stable with respect to rearrangement.     

Redox reactivity and reorganization energy of zinc cytochrome c cation radical

Little is known about transient intermediates in photoinduced electron-transfer reactions of metalloproteins. Oxidative quenching of the triplet state of zinc cytochrome c, 3Zncyt, is done at 20 degrees C, pH 7.00, and ionic strength of 1.00 M, conditions that suppress the thermal back-reaction and prolong the lifetime of the cation radical, Zncyt+. This species is reduced by [Fe(CN)6]4-, [W(CN)8]4-, [Os(CN)6]4-, [Mo(CN)8]4-, and [Ru(CN)6]4- complexes of similar structures and the same charge. The rate constants and thermodynamic driving forces for these five similar electron-transfer reactions were fitted to Marcus theory. The reorganization energy of Zncyt+ is lambda = 0.38(5) eV, lower than that of native cytochrome c, because the redox orbital of the porphyrin cation radical is delocalized and possibly because Met80 is not an axial ligand to the zinc(II) ion in the reconstituted cytochrome c. The rate constant for electron self-exchange between Zncyt+ and Zncyt, k11 = 1.0(5) x 10(7) M(-1) s(-1), is large owing to the extended electron delocalization and relatively low reorganization energy. These results may be relevant to zinc(II) derivatives of other heme proteins, which are often used in studies of photoinduced electron-transfer reactions.     

Generation and absolute reactivity of an aryl enol radical cation in solution

Laser flash photolysis of 1-bromo-1-(4-methoxyphenyl)acetone in acetonitrile leads to the formation of the alpha-acyl 4-methoxybenzyl radical that under acidic conditions rapidly protonates to give detectable amounts of the radical cation of the enol of 4-methoxyphenylacetone. This enol radical cation is relatively long-lived in acidic acetonitrile (tau approximately equal to 200 micros), which is on the same order of magnitude as the radical cations of other 4-methoxystyrene derivatives. Rate constants for deprotonation of the radical cation and the acid dissociation constant for the enol radical cation were also determined using time-resolved absorption spectroscopy. Deprotonation is rapid, taking place with a rate constant of 3.9 x 10(6) s(-1), but the enol radical cation is found to be only moderately acidic in acetonitrile having a pK(a) = 3.2. The lifetime of the enol radical cation was also found to be sensitive to the presence of oxygen and chloride. The sensitivity toward oxygen is explained by oxygen trapping the vinyloxy radical component of the enol radical cation/vinyloxy equilibrium, while chloride acts as a nucleophile to trap the enol radical cation.     

Coumarin 314 free radical cation: formation, properties, and reactivity toward phenolic antioxidants

We have explored the photogeneration of the coumarin 314 radical cation by using nanosecond laser excitation at wavelengths longer than 400 nm in benzene, acetonitrile, dichloromethane, and aqueous media. In addition, time-resolved absorption spectroscopy measurements allowed detection of the triplet excited state of coumarin 314 (C(314)) with a maximum absorption at 550 nm in benzene. The triplet excited state has a lifetime of 90 μs in benzene. It is readily quenched by oxygen (k(q) = 5.0 × 10(9) M(-1) s(-1)). From triplet-triplet energy transfer quenching experiments, it is shown that the energy of this triplet excited state is higher than 35 kcal/mol, in accord with the relatively large singlet oxygen quantum yield (Φ(Δ) = 0.25). However, in aqueous media, the coumarin triplet was no longer observed, and instead of that, a long-lived (160 μs in air-equilibrated solutions) free radical cation with a maximum absorbance at 370 nm was detected. The free radical cation generation, which has a quantum yield of 0.2, occurs by electron photoejection. Moreover, density functional theory (DFT) calculations indicate that at least 40% of the electronic density is placed on the nitrogen atom in aqueous media, which explains its lack of reactivity toward oxygen. On the other hand, rate constant values close to the diffusion rate limit in water (>10(9) M(-1) s(-1)) were found for the quenching of the C(314) free radical cation by phenolic antioxidants. The results have been interpreted by an electron-transfer reaction between the phenolic antioxidant and the radical cation where ion pair formation could be involved.     

Remarkable structure deformation in phenothiazine trimer radical cation

[structure: see text] A trimeric phenothiazine and its radical cation were prepared, and their structures were elucidated. In contrast to a largely twisted structure in the neutral species, the radical cation had a unique structure deformation that allowed charge-transfer-type conjugation from the outer phenothiazine rings to the central phenothiazine radical cation.     

Synthesis, structure, and reactivity of a dihydrido borenium cation

Bottled! The employment of hexaphenylcarbodiphosphorane as ancillary ligand has allowed the isolation of the otherwise transient dihydrido borenium cation.     

Tetramethylcyclobutadiene radical cation

The tetramethylcyclobutadiene radical cation has been generated photochemically in solutions of aluminum halide σ complexes of tetramethylcyclobutadiene. It decays thermally to a “dimeric” radical cation.     

Tin-centered radical and cation: stable and free

The first stable stannyl radical (tBu2MeSi)3Sn* (1) has been synthesized by the reaction of tBu2MeSiNa with SnCl2-dioxane in diethyl ether. The X-ray crystal structure and electron paramagnetic resonance (EPR) data of this radical show that 1 has a planar geometry, being a pi-radical in both the solid and the liquid states. One-electron oxidation of 1 with Ph3C+.B(C6F5)4- in benzene quantitatively produced the corresponding cation (tBu2MeSi)3Sn+.B(C6F5)4- (2), representing the stable free stannylium ion that has been fully characterized by X-ray analysis and NMR data. Being free, 2 features a record downfield shifted resonance for stannylium ions: +2653 ppm.     

吩噻嗪衍生物自由基正离子六氯酸锑盐单晶的制备和分子结构

以2,2,6,6-四甲基-4-乙酰氧基哌啶氧铵六氯锑酸盐为单电子氧化剂制备了N-甲基N-乙基, N-正丁基, N-苯基和N-对-硝基苯基等五种吩噻嗪自由基正离子六氯锑酸盐单晶(3a-3e)并对3a和3b作了X射线结构分析, 发现它们的分子构型与其母体中性分子有明显的差别, 说明在自由基正离子中存在着很强的共轭效应和超共轭效应。     

Methyl propionate radical cation

Examination of the reactions of the long-lived (>0.5-s) radical cations of CD₃CH₂COOCH₃ and CH₃CH₂COOCD₃ indicates that the long-lived, nondecomposing methyl propionate radical cation CH₃CH₂C(O)OCH ₃ ^+· isomerizes to its enol form CH₃CH=C(OH)OCH ₃ ^+· (ΔH _{isomerization} ? ?32 kcal/mol) via two different pathways in the gas phase in a Fourier-transform ion cyclotron resonance mass spectrometer. A 1,4-shift of a β-hydrogen of the acid moiety to the carbonyl oxygen yields the distonic ion ^·CH₂CH₂C⁺ (OH)OCH₃ that then rearranges to CH₃CH=C(OH)OCH ₃ ^+· probably by consecutive 1,5- and 1,4-hydrogen shifts. This process is in competition with a 1,4-hydrogen transfer from the alcohol moiety to form another distonic ion, CH₃CH₂C⁺(OH)OCH ₂ ^· , that can undergo a 1,4-hydrogen shift to form CH₃CH=C(OH)OCH ₃ ^+· . Ab initio molecular orbital calculations carried out at the UMP2/6-31G** + ZPVE level of theory show that the two distonic ions lie more than 16 kcal/mol lower in energy than CH₃CH₂C(O)OCH ₃ ^+· . Hence, the first step of both rearrangement processes has a great driving force. The 1,4-hydrogen shift that involves the acid moiety is 3 kcal/mol more exothermic (ΔH _{isomerization}=?16 kcal/mol) and is associated with a 4-kcal/mol lower barrier (10 kcal/mol) than the shift that involves the alcohol moiety. Indeed, experimental findings suggest that the hydrogen shift from the acid moiety is likely to be the favored channel.     

Glutathione radical cation in the gas phase; generation, structure and fragmentation

Two different chemical methods have been used to form glutathione radical cations: (1) collision-induced dissociations (CIDs) of the ternary complex [Cu(II)(tpy)(M)]˙(2+) (M = GSH, tpy = 2,2':6',2'-terpyridine) and (2) homolysis of the S-NO bond in protonated S-nitrosoglutathione. The radical cations, M˙(+), were trapped and additional CIDs were performed. They gave virtually identical CID spectra, suggesting a facile interconversion between initial structures prior to fragmentation. DFT calculations at the B3LYP/6-31++G(d,p) level of theory have been used to study interconversion between different isomers of the glutathione radical cation and to examine mechanisms by which these ions fragment. The N-terminal α-carbon-centred radical cation, strongly stabilized by the captodative effect, is at the global minimum, which is 8.5 kcal mol(-1) lower in enthalpy than the lowest energy conformer of the S-centred radical cation. The barrier against interconversion is 18.1 kcal mol(-1) above the S-centred radical.     

The cysteine radical cation: structures and fragmentation pathways

A theoretical study on the structures, relative energies, isomerization reactions and fragmentation pathways of the cysteine radical cation, [NH(2)CH(CH(2)SH)COOH].+, is reported. Hybrid density functional theory (B3LYP) has been used in conjunction with the 6-311++G(d,p) basis set. The isomer at the global minimum, Captodative-1, has the structure NH(2)C.(CH(2)SH)C(OH)(2)+; the stability of this ion is attributed to the captodative effect in which the NH(2) functions as a powerful pi-electron donor and C(OH)(2)+ as a powerful pi-electron acceptor. Ion Distonic-S-1, H(3)N(+)CH(CH(2)S.)COOH, in which the radical is formally situated on the S atom, is higher in enthalpy (DeltaH degrees (0)) than Captodative-1 by 6.1 kcal mol(-1), but is lower in enthalpy than another isomer Distonic-C-1, H(3)N(+)C.(CH(2)SH)COOH, by 8.2 kcal mol(-1). Isomerization of the canonical radical cation of cysteine, [H(2)NCH(CH(2)SH)COOH].+, (Canonical-1), to Captodative-1 has an enthalpy of activation of 25.8 kcal mol(-1), while the barrier against isomerization of Canonical-1 to Distonic-S-1 is only 9.6 kcal mol(-1). Two additional transient tautomers, one with the radical located at C(alpha) and the charge on SH(2), and the other a carboxy radical with the charge on NH(3), are reported. Plausible fragmentation pathways (losses of small molecules, CO(2), CH(2)S, H(2)S and NH(3), and neutral radicals COOH. , HSCH(2). and NH(2).) from Canonical-1 are examined.     

A stable radical-substituted radical cation with strongly ferromagnetic interaction: nitronyl nitroxide-substituted 5,10-diphenyl-5,10-dihydrophenazine radical cation

A stable radical-substituted radical ion with strongly ferromagnetic intramolecular interaction (J) between the radical and radical ion sites is an attractive spin building block of organic magnets. We prepared 2-nitronyl nitroxide-substituted 5,10-diphenyl-5,10-dihydrophenazine radical cation, 1+. The 1+ salt was stable under aerated conditions at room temperature and had a large J/kB value (>/=+700 K).     

The triethylenediamine cation radical: An ESR study

Compared with normal and bridge-head aminium cations, the triethylenediamine cation is relatively stable. Its ESR spectrum shows that the two nitrogen atoms and all the protons are magnetically equivalent even at 77 K. This favours a symmetrical ground state rather than a dynamic equilibrium between classical, asymmetric structures.     

The first BETS radical cation salts with dicyanamide anion: Crystal growth, structure and conductivity study

Electrochemical oxidation of bis(ethylenedithio)tetraselenafulvalene (BETS) has been investigated. Simple and complex dicyanamides of transition metals (Mn²⁺, Ni²⁺ and Fe²⁺) were used as electrolytes. The correlation between composition of prepared radical cation salts and metal nature in electrolytes was established. Manganese dicyanamides provide the formation of BETS salts with the {Mn[N(CN)₂]₃}- and [N(CN)₂]-XH₂O anions. When Ni- or Fe-containing electrolytes were used only metalless BETS salts, α″-BETS₂[N(CN)₂]·2H₂O (I) and θ-BETS₂[N(CN)₂]·3.6H₂O (II), formed. Structures and conducting properties of these salts were analyzed. Both salts exhibit layered structure. Conducting radical cation layers have α″ (I)- or θ-type (II). Anion sheets appear as two-dimensional polymer networks of different types. These networks are formed by [N(CN)]₂⁻ anions and water molecules interlinked by hydrogen bonds. Salt I is a semiconductor and II demonstrates resistance drop down to150 K at normal pressure and down to 72 K at ∼0.4 kbar pressure.     

A nonelectrocyclic path from the cyclobutene cation radical to the 1,3-butadiene cation radical

The conversion of the cyclobutene cation radical to the 1,3-butadiene cation radical has been studied using MINDO /3 and ab initio SCF MO methods. Not only smooth electrocyclic but also stepwise, non-electrocyclic routes were considered. Both calculational methods agree that the preferred reaction path is a novel nonelectrocyclic one proceeding through an intermediate “cyclopropylcarbinyl cation radical.” The quantitative agreement in the activation parameters calculated by the two methods is excellent. The proposed intermediate also provides an attractive explanation for the mass spectrometric fragmentation patterns of the cyclobutene and butadiene cation radicals.