10,000-fold concentration increase of the biomarker cardiac troponin I in a reducing union microfluidic chip using cationic isotachophoresis

This paper describes the preconcentration of the biomarker cardiac troponin I (cTnI) and a fluorescent protein (R-phycoerythrin) using cationic isotachophoresis (ITP) in a 3.9 cm long poly(methyl methacrylate) (PMMA) microfluidic chip. The microfluidic chip includes a channel with a 5× reduction in depth and a 10× reduction in width. Thus, the overall cross-sectional area decreases by 50× from inlet (anode) to outlet (cathode). The concentration is inversely proportional to the cross-sectional area so that as proteins migrate through the reductions, the concentrations increase proportionally. In addition, the proteins gain additional concentration by ITP. We observe that by performing ITP in a cross-sectional area reducing microfluidic chip we can attain concentration factors greater than 10,000. The starting concentration of cTnI was 2.3 μg mL?1 and the final concentration after ITP concentration in the microfluidic chip was 25.52 ± 1.25 mg mL?1. To the author's knowledge this is the first attempt at concentrating the cardiac biomarker cTnI by ITP. This experimental approach could be coupled to an immunoassay based technique and has the potential to lower limits of detection, increase sensitivity, and quantify different isolated cTnI phosphorylation states.     

Molecular libraries in liquid phase via UGI-MCR

Standard chemistry prescribes the conversion of one or two compounds into their products. In contrast, Eintopf (one-pot) multicomponent reactions (MCRs) involve at least three different compounds. One-pot MCRs are a useful tool in combinatorial chemistry: From a mixture of educts a large number of products can be simultaneously formed in liquid phase, called a soluble molecular library. The member compounds of such libraries are investigated simultaneously for desired properties, e.g. antibiotic activity. The main constraint is, that the underlying chemistry must not produce unknown side reactions and must lead to a broad spectrum of stable products with high yields. Isocyanide multicomponent chemistry allows the generation of soluble libraries of very different sizes, which are easy to screen for biological or pharmaceutical efficacy using the algorithms presented. Products can easily be enumerated and the kinetics of the isocyanide chemistry is simple to investigate. Combinatorial chemistry is capable of generating and optimizing leads faster and with fewer resources than by conventional means. Combinatorial chemistry based on isocyanide chemistry is by far the most important and most impressive technique in use today to reducing time and costs associated with lead generation and optimization during the drug discovery process. The simplicity of the reaction conditions involved means that the generation and screening of libraries can be automated.     

The mechanism of solid-state decompositions in a retrospective

This is an overview of the early investigations into the mechanism of solid decompositions since the fundamental studies by Ostwald on catalysis during 1890–1902 and the first experimental study of the autocatalytic decomposition of Ag₂O by Lewis in 1905. In order to explain the formation mechanism of the solid product, Volmer suggested in 1929 that the decomposition of Ag₂O includes two sequential stages: first, a thermal decomposition of the oxide into gaseous silver atoms and oxygen molecules and second, the condensation of the supersaturated silver vapor. This revolutionary idea was immediately used by Schwab to explain the autocatalytic peculiarity of solid-state decomposition reactions. However, this mechanism did not receive the acceptance of the scientific community. On the contrary, as can be seen from the results presented at the conference “Chemical reactions involving solids” in Bristol in 1938, this model was dismissed as unrealistic and, as a result, was since forgotten. Instead, considerable attention at this conference was devoted to the disorder theory proposed earlier by Wagner and Schottky, and to the mechanism of ion transport in the solid crystals. During the subsequent 70 years, decomposition mechanisms have been interpreted, without visible progress, on the latter basis. The mechanism of congruent dissociative vaporization proposed independently in 1990 turned out to be in complete agreement with the Volmer–Schwab model. It has been treated with the same distrust. These historical events, in the author’s opinion, are responsible for the prolonged stagnation in the development of solid-state decomposition theory.     

10,000-fold concentration increase in proteins in a cascade microchip using anionic ITP by a 3-D numerical simulation with experimental results

This paper describes both the experimental application and 3-D numerical simulation of isotachophoresis (ITP) in a 3.2 cm long "cascade" poly(methyl methacrylate) (PMMA) microfluidic chip. The microchip includes 10 × reductions in both the width and depth of the microchannel, which decreases the overall cross-sectional area by a factor of 100 between the inlet (cathode) and outlet (anode). A 3-D numerical simulation of ITP is outlined and is a first example of an ITP simulation in three dimensions. The 3-D numerical simulation uses COMSOL Multiphysics v4.0a to concentrate two generic proteins and monitor protein migration through the microchannel. In performing an ITP simulation on this microchip platform, we observe an increase in concentration by over a factor of more than 10,000 due to the combination of ITP stacking and the reduction in cross-sectional area. Two fluorescent proteins, green fluorescent protein and R-phycoerythrin, were used to experimentally visualize ITP through the fabricated microfluidic chip. The initial concentration of each protein in the sample was 1.995 μg/mL and, after preconcentration by ITP, the final concentrations of the two fluorescent proteins were 32.57 ± 3.63 and 22.81 ± 4.61 mg/mL, respectively. Thus, experimentally the two fluorescent proteins were concentrated by over a factor of 10,000 and show good qualitative agreement with our simulation results.     

On the mechanism of liquid phase halogenation of adamantane derivatives

The novel mechanistic representation of adamantane derivatives halogenation process is introduced.     

Mathematical modeling of penicillin G extraction in an emulsion liquid membrane system containing only a surfactant in the membrane phase

An extraction experiment of penicillin G was performed in an emulsion liquid membrane system in which only ECA 4360J exists in the organic membrane phase without a predominant carrier, Amberlite LA-2, used in our previous works and it functions as a carrier as well as a surfactant. A permeation model for the present system has been developed as a primary study to examine the transport mechanism of penicillin G in the previous batch and continuous systems with two carriers of Amberlite LA-2 and ECA 4360J. The model takes into account the mass transfer in the external aqueous film, the extraction reaction between penicillin G and ECA 4360J at the external interface, the diffusion of penicillin G in the emulsion phase, the stripping reaction at the internal interface and the pH change of internal aqueous solution containing Na₂CO₃ with penicillin G transported into the internal phase. The experimental data were well fitted with the present model. Also, an expression for the reaction of penicillin G with ECA 4360J was obtained through a series of equilibrium measurements in liquid–liquid extraction system.     

Selectivity optimization in liquid chromatography via stationary phase tuning

In striving for the best possible separation, the selectivity of stationary phases as an optimization parameter is often underestimated although there are many ways to influence this powerful tool. This review serves to provide an insight into the various ways of adapting the selectivity of a separation in liquid chromatography. Approaches via temperature and flow rate tuning are discussed as a basis followed by focusing on the stationary phase as the superior optimization parameter. Highly selective stationary phases hereby provide an advantage for groups of similar analytes. For more complex mixtures, separations can be improved using mixed-mode technologies where different retention mechanisms are combined. Serial coupling, mixed-bed columns, and stationary phase optimized selectivity liquid chromatography provide solutions to various degrees. Finally, the advantages of stationary phase tuning over adaption of mobile phase and/or temperature are presented in terms of optimum application range.     

Optimization via liquid phase mixtures in capillary gas chromatography

The use of sequentially coupled columns to achieve a binary liquid phase mixture has been simplified by the availability of zero dead volume fittings compatible with fused silica columns. The extent to which the velocity gradient through the coupled column affects the “apparent” liquid phase ratio can be determined by graphic interpolation; the length ratio of the coupled column segments can then be adjusted so that the “apparent” liquid phase ratio actually experienced by the solutes agrees with the targeted value. The fact that the direction of flow through the coupled column affects the chromatographic dispersion suggests that accepted generalizations on flow optimization throughout the column may not be precisely correct.     

Surfactant transfer through a liquid membrane: origin of spontaneous oscillations at the membrane/acceptor phase interface

Instability due to surfactant redistribution in a liquid membrane system consisting of two solutions, namely source and acceptor, separated by a layer of immiscible liquid is studied theoretically and experimentally. The transfer of a surfactant from a source phase to an acceptor phase is often accompanied by spontaneous nonlinear oscillations of electrical potential and/or interfacial tension. The oscillations can be generated at each of the membrane interfaces. Here a mechanism of oscillation, which develops at the membrane/acceptor phase interface, is proposed on the basis of direct numerical simulation of the system evolution. Performed experimental studies confirm the theoretical results.     

Contribution to the mechanism of liquid membrane oscillators involving cationic surfactant

It is shown that liquid membrane oscillators with cationic surfactants have more complex oscillation patterns than observed previously. The actual details of the oscillations depend strongly on the nature of the membrane material, disclosing even the presence of parallel molecular events. It appears that sampling topology also has a great influence on the observed oscillatory behavior. Variation of oscillation patterns with diffusion path length in the membrane demonstrated the decisive role played by the actual timing of molecular events. The new evidences produced complete usefully the actual views concerning the mechanism of oscillations.     

Determination of membrane protein structure and dynamics by magic-angle-spinning solid-state NMR spectroscopy

It is shown that molecular structure and dynamics of a uniformly labeled membrane protein can be studied under magic-angle-spinning conditions. For this purpose, dipolar recoupling experiments are combined with novel through-bond correlation schemes that probe mobile protein segments. These NMR schemes are demonstrated on a uniformly [13C,15N] variant of the 52-residue polypeptide phospholamban. When reconstituted in lipid bilayers, the NMR data are consistent with an alpha-helical trans-membrane segment and a cytoplasmic domain that exhibits a high degree of structural disorder.     

Eight-membered-ring solid-state conformational interconversion via the atom-flip mechanism, a CPMAS 13C NMR and crystallographic stereochemical study

Nefopam methohalide (chloride, bromide, and iodide) medium-ring quaternary ammonium salts of the non-narcotic analgesic tertiary amine drug give crystals belonging to the identical monoclinic P2(1)/c space group, and all of these pseudopolymorphs exhibit the same packing motif. A singular boat-boat (BB) more compact conformation is observed in the nefopam methochloride crystal. Larger halide anions (bromide and iodide) increase the void distance between the 2(1)-screw axis related adjacent ammonium cations to accommodate void-size dependent equilibrium quantities of the twist-chair-chair (TCC) more extended conformation. The BB:TCC occupancy factors are 0.961(5):0.039(5) [193 K], 0.780(5):0.220(5) [293 K], and 0.755(6):0.245(6) [343 K] for the methobromide crystal, while values of 0.657(5):0.343(5) [193 K] and 0.592(7):0.408(7) [293 K] were measured for the methiodide. Above a minimum of ca. 2.53 A, the occupancy factors were found to be linearly correlated to the intermolecular (TCC)Me(eq)-H...H-Me(ax)(TCC) distance between abutting methyl group protons in 2(1)-screw axis related neighbors. Temperature-dependent occupancy factors for the two conformers are interpreted in terms of a medium ring atom-flip facile interconversion between the two low energy conformations in crystals containing the appropriate size intercation void. A BB/TCC atom-flip interconversion in the methochloride unit cell would result in van der Waals interactions due to an estimated 2.31 A close intermolecular (TCC)Me(eq)-H...H-Me(ax)(TCC) distance between adjacent 2(1)-screw symmetry ammonium cations. The 203 K low-temperature CPMAS 13C NMR spectrum of the methiodide salt showed two slow exchange limit (SEL) delta 57.91 [BB] and delta 63.10 [TCC] OCH2CH2N peaks. A variable low-temperature CPMAS NMR investigation of the solid methiodide showed complex dynamic behavior that cannot be interpreted solely on the basis of an atom-flip conformational interconversion. Local magnetic fields from the gem-dimethyl rapidly rotating proton magnetic dipoles provide a distance-dependent T1 relaxation mechanism for neighboring carbons in the solid-state.     

A study on a two-component liquid membrane system

A novel two-component liquid membrane system in which one of the components, polyethylene glycol, acts as both carrier and surfactant, is described. The composition and the stability of the two-component liquid membrane system are discussed in terms of surfactant concentration, base concentration in the internal phase, acidity of the external phase, the concentration of the counter-anion SCN^? in the cation extraction, etc. The extraction efficiency and the permeation mechanism of the system are compared with that of conventional three-component liquid membranes. Obviously, the nature of the system is quite different from three-component liquid membranes and conventional solvent extraction, although the system of solvent extraction also contains two components.     

Retention mechanism of peptides on a stationary phase embedded with a quaternary ammonium group: A liquid chromatography study

We investigated the mechanisms involved in the retention of various peptides on a stationary phase embedded with a quaternary ammonium group (BS C23), by high-performance liquid chromatography. This was compared with peptide retention on a conventional reversed-phase C18 (RP C18) column under isocratic conditions, to understand better the various mechanisms involved. Chromatographic characterization of the two stationary phases with “model” compounds showed that BS C23 is less hydrophobic than RP C18 and induces electrostatic interaction (attraction or repulsion) with ionized compounds. If reversed-phase partitioning was the predominant retention phenomenon, for both stationary phases, the retention mechanisms in BS C23 provided different selectivity to that of RP C18. Electrostatic attraction or repulsion was clearly observed between peptides and the permanent positively charged group embedded in BS C23 depending on the pH. For most of the peptides, a weak anion-exchange mechanism was observed on the quaternary ammonium-embedded stationary phase if mobile phases at neutral pH and low ionic strengths were employed.     

Separation mechanism of chiral compounds in chiral stationary phase liquid chromatography

In this paper, the concept of reversed- or normal-phase chiral stationary phase liquid chromatography has been put forward according to the polar strength of mobile and stationary phases. The statistical model developed in HPLC has been used to investigate the separation mechanism of D- and L-enantiomer in chiral stationary phase liquid chromatography. It has been observed that the variation of capacity factor of enantiomers with mobile phase composition in both reversed-phase and normal-phase chiral stationary phase liquid chromatography can be described by the fundamental elution equation lnk' = a + blnC_b + _cC_b. The effect of mobile phase composition on the selectivity of enantiomers D and L in normal-phase chiral stationary phase liquid chromatography can be described by the equation lnα = Δa + ΔblnC_b, but in reversed-phase chiral stationary phase liquid chromatography the selectivity is almost independant of the mobile phase composition.     

A top surface liquid layer during membrane formation using vapor-induced phase separation (VIPS)—Evidence and mechanism of formation

The formation of a surface liquid layer on the top of membrane forming systems made of poly(ether-imide) (PEI) and N-methylpyrrolidone (NMP) was clearly demonstrated during water vapor-induced phase separation (VIPS) through several in situ investigation methods including optical microscopy and dynamic water contact angle measurements for a qualitative approach, and Raman confocal and FTIR microscopy for a quantitative one. A mechanism involving the shrinkage from the polymer-rich phase consecutively to the surface phase separation is proposed to account for the significantly high concentration of PEI in the surface liquid layer. The emergence of a surface liquid layer during the phase separation process is discussed in terms of implications on morphology of membrane fabricated using VIPS and how it contrasts with liquid-induced phase separation.     

Structure determination of a membrane protein with two trans-membrane helices in aligned phospholipid bicelles by solid-state NMR spectroscopy

The structure of the membrane protein MerFt was determined in magnetically aligned phospholipid bicelles by solid-state NMR spectroscopy. With two trans-membrane helices and a 10-residue inter-helical loop, this truncated construct of the mercury transport membrane protein MerF has sufficient structural complexity to demonstrate the feasibility of determining the structures of polytopic membrane proteins in their native phospholipid bilayer environment under physiological conditions. PISEMA, SAMMY, and other double-resonance experiments were applied to uniformly and selectively (15)N-labeled samples to resolve and assign the backbone amide resonances and to measure the associated (15)N chemical shift and (1)H-(15)N heteronuclear dipolar coupling frequencies as orientation constraints for structure calculations. (1)H/(13)C/(15)N triple-resonance experiments were applied to selectively (13)C'- and (15)N-labeled samples to complete the resonance assignments, especially for residues in the nonhelical regions of the protein. A single resonance is observed for each labeled site in one- and two-dimensional spectra. Therefore, each residue has a unique conformation, and all protein molecules in the sample have the same three-dimensional structure and are oriented identically in planar phospholipid bilayers. Combined with the absence of significant intensity near the isotropic resonance frequency, this demonstrates that the entire protein, including the loop and terminal regions, has a well-defined, stable structure in phospholipid bilayers.     

Membrane orientation of the Na,K-ATPase regulatory membrane protein CHIF determined by solid-state NMR

Corticosteroid hormone-induced factor (CHIF) is a major regulatory subunit of the Na,K-ATPase, and a member of an evolutionarily conserved family of membrane proteins that regulate the function of the enzyme complex in a tissue-specific and physiological-state-specific manner. Here we present the structure of CHIF oriented in the membrane, determined by solid-state NMR orientation-dependent restraints. Because CHIF adopts a similar structure in lipid micelles and bilayers, it is possible to assign the solid-state NMR spectrum measured for (15)N-labeled CHIF in oriented bilayers from the structure determined in micelles, to obtain the global orientation of the protein in the membrane.