Instability induced by cross-diffusion in reaction–diffusion systems

In this paper the instability of the uniform equilibrium of a general strongly coupled reaction–diffusion is discussed. In unbounded domain and bounded domain the sufficient conditions for the instability are obtained respectively. The conclusion is applied to the ecosystem, it is shown that cross-diffusion can induce the instability of an equilibrium which is stable for the kinetic system and for the self-diffusion–reaction system.     

Global dynamics of delayed reaction–diffusion equations in unbounded domains

We consider a nonlocal delayed reaction–diffusion equation in an unbounded domain that includes some special cases arising from population dynamics. Due to the non-compactness of the spatial domain, the solution semiflow is not compact. We first show that, with respect to the compact open topology for the natural phase space, the solutions induce a compact and continuous semiflow ${\Phi}$ on a bounded and positively invariant set Y in C ₊?=?C([?1, 0], X ₊) that attracts every solution of the equation, where X ₊ is the set of all bounded and uniformly continuous functions from ${\mathbb{R}}$ to [0, ∞). Then, to overcome the difficulty in describing the global dynamics, we establish a priori estimate for nontrivial solutions after describing the delicate asymptotic properties of the nonlocal delayed effect and the diffusion operator. The estimate enables us to show the permanence of the equation with respect to the compact open topology. With the help of the permanence, we can employ standard dynamical system theoretical arguments to establish the global attractivity of the nontrivial equilibrium. The main results are illustrated with the diffusive Nicholson’s blowfly equation and the diffusive Mackey–Glass equation.     

A gradient structure for systems coupling reaction–diffusion effects in bulk and interfaces

We derive gradient-flow formulations for systems describing drift-diffusion processes of a finite number of species which undergo mass-action type reversible reactions. Our investigations cover heterostructures, where material parameter may depend in a nonsmooth way on the space variable. The main results concern a gradient-flow formulation for electro-reaction–diffusion systems with active interfaces permitting drift-diffusion processes and reactions of species living on the interface and transfer mechanisms allowing bulk species to jump into an interface or to pass through interfaces. The gradient flows are formulated in terms of two functionals: the free energy and the dissipation potential. Both functionals consist of a bulk and an interface integral. The interface integrals determine the interface dynamics as well as the self-consistent coupling to the model in the bulk. The advantage of the gradient structure is that it automatically generates thermodynamically consistent models.     

Viability for nonlinear multi-valued reaction–diffusion systems

In this paper we consider a nonlinear evolution reaction–diffusion system governed by multi-valued perturbations of m-dissipative operators, generators of nonlinear semigroups of contractions. Let X and Y be real Banach spaces, ${\mathcal{K}}In this paper we consider a nonlinear evolution reaction–diffusion system governed by multi-valued perturbations of m-dissipative operators, generators of nonlinear semigroups of contractions. Let X and Y be real Banach spaces, K{\mathcal{K}} be a nonempty and locally closed subset in \mathbbR ×X×Y, A:D(A) í X\rightsquigarrow X, B:D(B) í Y\rightsquigarrow Y{\mathbb{R} \times X\times Y,\, A:D(A)\subseteq X\rightsquigarrow X, B:D(B)\subseteq Y\rightsquigarrow Y} two m-dissipative operators, F:K ? X{F:\mathcal{K} \rightarrow X} a continuous function and G:K \rightsquigarrow Y{G:\mathcal{K} \rightsquigarrow Y} a nonempty, convex and closed valued, strongly-weakly upper semi-continuous (u.s.c.) multi-function. We prove a necessary and a sufficient condition in order that for each (t,x,h) ? K{(\tau,\xi,\eta)\in \mathcal{K}}, the next system

{ lc u￠(t) ? Au(t)+F(t,u(t),v(t))    t 3 tv￠(t) ? Bv(t)+G(t,u(t),v(t))    t 3 tu(t)=x,    v(t)=h, \left\{ \begin{array}{lc} u'(t)\in Au(t)+F(t,u(t),v(t))\quad t\geq\tau \\ v'(t)\in Bv(t)+G(t,u(t),v(t))\quad t\geq\tau \\ u(\tau)=\xi,\quad v(\tau)=\eta, \end{array} \right.      6. Blow-up rates for semi-linear reaction–diffusion systems      Henghui Zou 《Journal of Differential Equations》2014       7. Stability of mass action reaction–diffusion systems      《Nonlinear Analysis: Theory, Methods & Applications》2004,56(8):1105-1131 Results on stability of two types of chemical reactions, one represented by an acyclic graph and the other as a reversible reaction have been extended to the case of reaction–diffusion systems. Lyapunov functions are used as the major method for showing asymptotic stability of spatially homogeneous equilibria. Some examples are considered for illustration.      8. Bifurcation to locked fronts in two component reaction–diffusion systems      Grégory Faye  Matt Holzer 《Annales de l'Institut Henri Poincaré (C) Analyse Non Linéaire》2019,36(2):545-584 We study invasion fronts and spreading speeds in two component reaction–diffusion systems. Using a variation of Lin's method, we construct traveling front solutions and show the existence of a bifurcation to locked fronts where both components invade at the same speed. Expansions of the wave speed as a function of the diffusion constant of one species are obtained. The bifurcation can be sub or super-critical depending on whether the locked fronts exist for parameter values above or below the bifurcation value. Interestingly, in the sub-critical case numerical simulations reveal that the spreading speed of the PDE system does not depend continuously on the coefficient of diffusion.      9. Diffusive mixing of periodic wave trains in reaction–diffusion systems      Björn Sandstede  Arnd Scheel  Guido Schneider  Hannes Uecker 《Journal of Differential Equations》2012,252(5):3541-3574       10. On a reaction–diffusion model for calcium dynamics in dendritic spines      Kamel Hamdache  Mauricio Labadie 《Nonlinear Analysis: Real World Applications》2009,10(4):2478-2492       11. Complex dynamics of a reaction–diffusion epidemic model      Weiming Wang  Yongli Cai  Mingjiang Wu  Kaifa Wang  Zhenqing Li 《Nonlinear Analysis: Real World Applications》2012,13(5):2240-2258       12. Global existence for degenerate quadratic reaction–diffusion systems      M. Pierre  R. Texier-Picard 《Annales de l'Institut Henri Poincaré (C) Analyse Non Linéaire》2009 We consider a class of degenerate reaction–diffusion systems with quadratic nonlinearity and diffusion only in the vertical direction. Such systems can appear in the modeling of photochemical generation and atmospheric dispersion of pollutants. The diffusion coefficients are different for all equations. We study global existence of solutions.      13. Some asymptotic limits of reaction–diffusion systems appearing in reversible chemistry      Fiammetta Conforto  Laurent Desvillettes  Roberto Monaco 《Ricerche di matematica》2017,66(1):99-111 This paper concerns reaction–diffusion systems consisting of three or four equations, which come out of reversible chemistry. We introduce different scalings for those systems, which make sense in various situations (species with very different concentrations or very different diffusion rates, chemical reactions with very different rates, etc.). We show how recently introduced mathematical tools allow to prove that the formal asymptotics associated to those scalings indeed hold at the rigorous level.      14. Spatiotemporal dynamics of reaction–diffusion models of interacting populations      《Applied Mathematical Modelling》2014,38(17-18):4417-4427 The present investigation deals with the necessary conditions for Turing instability with zero-flux boundary conditions that arise in a ratio-dependent predator–prey model involving the influence of logistic population growth in prey and intra-specific competition among predators described by a system of non-linear partial differential equations. The prime objective is to investigate the parametric space for which Turing spatial structure takes place and to perform extensive numerical simulation from both the mathematical and the biological points of view in order to examine the role of diffusion coefficients in Turing instability. Various spatiotemporal distributions of interacting species through Turing instability in two dimensional spatial domain are portrayed and analyzed at length in order to substantiate the applicability of the present model.      15. A waiting time phenomenon for modulations of pattern in reaction–diffusion systems      Wolf-Patrick?DüllEmail author 《Zeitschrift für Angewandte Mathematik und Physik (ZAMP)》2012,8(1):1-23 In order to describe slow modulations in time and space of stable or slightly unstable spatially periodic stationary solutions of pattern forming reaction–diffusion systems, so-called phase diffusion equations and Cahn–Hilliard equations can be derived via multiple scaling analysis as formal approximation equations. In the case that these equations degenerate, waiting time phenomena are well known to occur. In this paper, we prove that such waiting time phenomena can also occur approximately in the original reaction–diffusion systems by proving estimates between the formal approximations and the exact solutions of the original systems.      16. Direct discontinuous Galerkin method for nonlinear reaction–diffusion systems in pattern formation      《Applied Mathematical Modelling》2014,38(5-6):1612-1621 Nonlinear reaction–diffusion systems are often employed in mathematical modeling for pattern formation. Most of the work to date has been concerned within one-dimensional or rectangular domains. However, it is recognised that in most applications multidimensional complex geometrical domains are typically more important. In this paper we solve reaction–diffusion systems by combining direct discontinuous Galerkin (DDG) finite element methods with implicit integration factor (IIF) time integration method, on triangular meshes. This allows us solve the nonlinear algebraic systems on an element-by-element bases with significant gains in computational time. Numerical solutions of two reaction–diffusion systems, the well-studied Schnakenberg model and chloride–iodide–malonic acid (CIMA) reactive model, are presented to demonstrate effects of various domain geometries on the resulting biological patterns. Our numerical results are in good agreement with other numerical and analytical results, and with experimental results.      17. Traveling waves of delayed reaction–diffusion systems with applications      Zhi-Xian Yu  Rong Yuan 《Nonlinear Analysis: Real World Applications》2011,12(5):2475-2488       18. Phragmen–lindelöf principle for weak subsolutions and cooperative reaction–diffusion systems      J. Smoller  V. Hutson  R. Landes 《Applicable analysis》2013,92(3-4):181-193 One of the principal techniques for treating sustems of reaction–diffusion equations is based on a comparison method using sub and super–solutions. In practice this method is much more effective if non–smooth subsolutions are allowed. In this note we extend the analysis in [2,3] for cooperative systems and prove a comparison principle for a natural and rather general class of weak subsolutions satisfying a Phragmen–Lindelöf condition. An application is then given to a biological model in involving a pair of mutualists.      19. Generalized travelling waves for perturbed monotone reaction–diffusion systems      《Nonlinear Analysis: Theory, Methods & Applications》2001,46(6):757-776       20. Blocking and invasion for reaction–diffusion equations in periodic media      Romain?Ducasse  Luca?RossiEmail author 《Calculus of Variations and Partial Differential Equations》2018,57(5):142 We investigate the large time behavior of solutions of reaction–diffusion equations with general reaction terms in periodic media. We first derive some conditions which guarantee that solutions with compactly supported initial data invade the domain. In particular, we relate such solutions with front-like solutions such as pulsating traveling fronts. Next, we focus on the homogeneous bistable equation set in a domain with periodic holes, and specifically on the cases where fronts are not known to exist. We show how the geometry of the domain can block or allow invasion. We finally exhibit a periodic domain on which the propagation takes place in an asymmetric fashion, in the sense that the invasion occurs in a direction but is blocked in the opposite one.

Stability of mass action reaction–diffusion systems

Results on stability of two types of chemical reactions, one represented by an acyclic graph and the other as a reversible reaction have been extended to the case of reaction–diffusion systems. Lyapunov functions are used as the major method for showing asymptotic stability of spatially homogeneous equilibria. Some examples are considered for illustration.     

Bifurcation to locked fronts in two component reaction–diffusion systems

We study invasion fronts and spreading speeds in two component reaction–diffusion systems. Using a variation of Lin's method, we construct traveling front solutions and show the existence of a bifurcation to locked fronts where both components invade at the same speed. Expansions of the wave speed as a function of the diffusion constant of one species are obtained. The bifurcation can be sub or super-critical depending on whether the locked fronts exist for parameter values above or below the bifurcation value. Interestingly, in the sub-critical case numerical simulations reveal that the spreading speed of the PDE system does not depend continuously on the coefficient of diffusion.     

Global existence for degenerate quadratic reaction–diffusion systems

We consider a class of degenerate reaction–diffusion systems with quadratic nonlinearity and diffusion only in the vertical direction. Such systems can appear in the modeling of photochemical generation and atmospheric dispersion of pollutants. The diffusion coefficients are different for all equations. We study global existence of solutions.     

Some asymptotic limits of reaction–diffusion systems appearing in reversible chemistry

This paper concerns reaction–diffusion systems consisting of three or four equations, which come out of reversible chemistry. We introduce different scalings for those systems, which make sense in various situations (species with very different concentrations or very different diffusion rates, chemical reactions with very different rates, etc.). We show how recently introduced mathematical tools allow to prove that the formal asymptotics associated to those scalings indeed hold at the rigorous level.     

Spatiotemporal dynamics of reaction–diffusion models of interacting populations

The present investigation deals with the necessary conditions for Turing instability with zero-flux boundary conditions that arise in a ratio-dependent predator–prey model involving the influence of logistic population growth in prey and intra-specific competition among predators described by a system of non-linear partial differential equations. The prime objective is to investigate the parametric space for which Turing spatial structure takes place and to perform extensive numerical simulation from both the mathematical and the biological points of view in order to examine the role of diffusion coefficients in Turing instability. Various spatiotemporal distributions of interacting species through Turing instability in two dimensional spatial domain are portrayed and analyzed at length in order to substantiate the applicability of the present model.     

A waiting time phenomenon for modulations of pattern in reaction–diffusion systems

In order to describe slow modulations in time and space of stable or slightly unstable spatially periodic stationary solutions of pattern forming reaction–diffusion systems, so-called phase diffusion equations and Cahn–Hilliard equations can be derived via multiple scaling analysis as formal approximation equations. In the case that these equations degenerate, waiting time phenomena are well known to occur. In this paper, we prove that such waiting time phenomena can also occur approximately in the original reaction–diffusion systems by proving estimates between the formal approximations and the exact solutions of the original systems.     

Direct discontinuous Galerkin method for nonlinear reaction–diffusion systems in pattern formation

Nonlinear reaction–diffusion systems are often employed in mathematical modeling for pattern formation. Most of the work to date has been concerned within one-dimensional or rectangular domains. However, it is recognised that in most applications multidimensional complex geometrical domains are typically more important. In this paper we solve reaction–diffusion systems by combining direct discontinuous Galerkin (DDG) finite element methods with implicit integration factor (IIF) time integration method, on triangular meshes. This allows us solve the nonlinear algebraic systems on an element-by-element bases with significant gains in computational time. Numerical solutions of two reaction–diffusion systems, the well-studied Schnakenberg model and chloride–iodide–malonic acid (CIMA) reactive model, are presented to demonstrate effects of various domain geometries on the resulting biological patterns. Our numerical results are in good agreement with other numerical and analytical results, and with experimental results.     

Phragmen–lindelöf principle for weak subsolutions and cooperative reaction–diffusion systems

One of the principal techniques for treating sustems of reaction–diffusion equations is based on a comparison method using sub and super–solutions. In practice this method is much more effective if non–smooth subsolutions are allowed. In this note we extend the analysis in [2,3] for cooperative systems and prove a comparison principle for a natural and rather general class of weak subsolutions satisfying a Phragmen–Lindelöf condition. An application is then given to a biological model in involving a pair of mutualists.     

Blocking and invasion for reaction–diffusion equations in periodic media

We investigate the large time behavior of solutions of reaction–diffusion equations with general reaction terms in periodic media. We first derive some conditions which guarantee that solutions with compactly supported initial data invade the domain. In particular, we relate such solutions with front-like solutions such as pulsating traveling fronts. Next, we focus on the homogeneous bistable equation set in a domain with periodic holes, and specifically on the cases where fronts are not known to exist. We show how the geometry of the domain can block or allow invasion. We finally exhibit a periodic domain on which the propagation takes place in an asymmetric fashion, in the sense that the invasion occurs in a direction but is blocked in the opposite one.