Crystal and molecular structures of 5,7-dimethyl-1,8-naphthyridine-2-ol (=LH) and of its mercury (II) complex HgL2 and synthesis of some lanthanide/HgL2 heterometallic complexes

The crystal structures of the title compounds have been determined by single crystal diffraction methods. Crystals of 5,7-dimethyl-1,8-naphthyridine-2-ol (1) are monoclinic, space groupP2₁/n witha=7.336(2),b=8.989(2),c=13.125(3)Å,=95.72(3)°,V=861.2(4)ų,Z=4,D _c =1.34 g cm^–3, finalR=0.052. The molecules are linked in pairs by two N-HO hydrogen bonds, and these dimers are stacked in a discontinuous, stepped fashion. Crystals of HgL₂ (2) are monoclinic space groupP2₁,/c witha=4.044(2),b=12.147(2),c=18.093(5)Å,=93.32(2)°,V=887.3(4)ų,Z=2,D _c =2.05 g cm^–3, finalR=0.051. In2 the mercury binds to N(1) to form a linear N-Hg-N coordination geometry, and the HgL₂ molecules form a continuous stacked structure. The syntheses of the compounds ML₄(NO₃)₃·H₂O (M=Nd, Gd, and Er), PrHg₂L₄(NO₃)₃, andM ₂Hg₃L₆(NO₃)₆ (M=Gd, Er) are also reported.     

Crystal structures of 3-(4-pyridinyl)-5,6,7,8-tetrahydro-1,2,4-triazolo[4,3-a]pyrimidine and its 6-hydroxy derivative

(1): C₁₀H₁₁N₅,M _r=201.23, from water, P ,a=6.913(1),b=8.198(2),c=9.212(2) Å, =72.36(2), =109.03(2) and =88.13(1)^o,D _x=1.436 g/cm³,Z=2. FinalR=0.043 for 1477 observed reflections. (2): C₁₀H₁₁N₅O,M _r=217.23, from methanol/water solution. P2₁/c,a=9.291(2),b=11.263(3),c=10.454(3) Å, and =114.05(1)^o,D _x=1.444, g/cm³,Z=4. FinalR 0.056 for 1587 observed reflections. The data were collected on a diffractometer at room temperature. Structures were solved by direct methods and refined by anisotropic full-matrix least-squares method. In the solid state both molecules have the same conformation and are packed in similar manner. The planarity of the condensed triazole ring and its electrons conjugation with a lone pair at N8 impose C6 sofa conformation of the saturated diazine rings. Hydroxy group in2 is in an energetically unfavorable axial position. Both in1 and2, N8–H ... N34 hydrogen bonds join molecules into infinite chains, and O6–H ... N1 hydrogen bonds in2 span the chains into two-dimensional net. The molecules in hydrogen bonded chains and sheets have the same chirality.     

bis-[2-(2-Methyl-3-butanone oxime)] hydrazine

C₁₀H₂₂N₄O₂, Mr=230.31, triclinic,P¯1,a=12.010(5),b=13.188(9),c=9.163(2)Å,=107.30(4),=108.35(3), =77.42(2)°,V=1303.(1)ų,Z=4,D _x=1.174(2) g cm^–3, (MoK)=0.71073 Å,=0.78 cm^–1,F(000)=504,T=297 K,R=0.039,R _w=0.054 for 3023 observed reflections (of 4521 unique data). The hard, transparent, colorless crystals give sharp, intense diffraction peaks; this may be related to the strong three dimensional hydrogen bonding involving the oxime groups as well as the hydrazine hydrogens. Bond distances and angles as well as torsion angles are in good agreement for the two independent molecules and are normal. Although there is near two-fold symmetry relating the two molecules, positions of neighboring groups removes a twofold crystallographic axis.     

Ionic liquid mediated preparation and X-ray crystal structure of [1-methylimidazolium]2[cis-MoO2(salicylato-O1,O2)2]

The complex salt, [1-MeimH]₂[cis-MoO₂(sal)₂], 1, (1-Meim=1-methylimidazole, sal=o-C₆H₄(C^–) (COC^–)) has been prepared by reacting Mo(CO)₆ with molten 1-methyl imidazolium salicylate [1-MeimH][salH], and the structure of 1 has been determined by single crystal X-ray crystallography: triclinic, P¯1,a=9.220(2),b=9.469(3),c=15.368(4)Å, =105.04(4),=99.48(3), =109.48(3)°,Z=2,D _calc=1.60 g/cm. 2809 reflections withI>2.5(I) gave a final values ofR=0.031 andR _w =0.041.     

Synthesis and characterization of a novel pentacyclic C16 diketone and derivatives

The syntheses and crystal structures of pentacyclo[9.4.1.0^5,14.0^7,13.0^12,15]hexadecane-3,9-dione (2), a novel C₁₆ diketone with potential inclusion ability, and the products of the reaction of2 withn-butyllithium andmeso-erythritol (i.e.,meso-1,2,3,4-butanetetrol) are described. Crystal data:2·H₂O, orthorhombic,Pmmn,a=10.7385(8),b=9.0188(6),c=6.8411(4)Å,V=662.55(7)ų, andR=0.039 (379 reflections);3 (product from reaction withn-butyllithium), triclinic,P¯1,a=8.7192(7),b=10.9351(8),c=12.1842(8)Å,=68.933(5),=75.850(6), =80.309(6)°,V=1047.0(1)ų, andR=0.081 (1811 reflections);4 (product from reaction with erythritol), triclinic,P¯1,a=7.7224(8),b=10.1976(8),c=10.7021(9)Å,=85.405(7),=85.766(8), =76.056(7)°,V=814.0(1)ų, andR=0.052 (1471 reflections).     

Crystal and molecular structure of [Rh(μ-SBut)(CO)(PPh3)]2

Reaction of [Rh(CO)₂Cl]₂ with Bu ^t SLi followed by refluxing with PPh₃ yields [Rh(-SBu ^t )(CO)(PPh₃)]₂(1). The structure of (1) has been determined by X-ray crystallography. Empirical formula: Rh₂P₂S₂C₄₆H₄₈O₂,M=964.78, triclinic, P¯1,a=11.408(9),b=13.241(8),c=15.830(3) Å,=93.67(3),=93.12(5),=110.8(6)°,Z=2,D _calc=1.44 g cm^–3,R=0.048 (R _w =0.062) for 5939 observed reflections. In the solid state, the compound exhibitscis geometry with respect to the phosphine and CO ligands. The geometry about the two metals is essentially square planar, with a dihedral angle of 103.2°, and a butterfly angle of 102.3°. Compound (1) is stereochemically rigid on the NMR time scale from –80 to +80°C.     

Trimethylamine-N-oxide induced disproportionation of Re2(CO)10: Synthesis and X-ray crystal structure of [fac-Re(CO)3(ONMe3)3] [ReO4]

An attempted synthesis of [Re(CO₃) (-OH)]₄,1, by reacting Re₂(CO)₁₀ with an excess of NMe₃O in THF resulted instead in isolation of a disproportionation product, [fac-Re(CO)₃(ONMe₃)₃][ReO₄],2. The structure of2 was determined via X-ray crystallography: tri-clinic,P1^¯,a=9.499(5),b=9.841(2),c=13.448(2)Å,=109.92(2),=106.89(3), =93.15(4)°,D _calc=2.22 g^–3 andZ=2. Least-squares refinement based on 1606 observed (I>3(I)) reflections gave final values ofR=0.040 andR _w=0.047. The cation is a distorted octahedron that exhibits several structural manifestations of steric crowding among the bulky NMe₃O ligands.     

Synthesis and X-ray crystal structure of three polyazamacrocycles having sulfonate pendant groups: Piperazinyl-monomethanesulfonic acid,sodium hydrogen 1,4,7-triazacyclononane-N,N′-di(methanesulfonate) and 1,4,7,10-tetraazacyclododecane-N,N′-di(methanesulfonic acid)

C₅H₁₀N₂O₃S,1, monoclinicC2/c,a=17.545(5),b=6.822(8),c=13.928(2),=108.36(7),Z=8, MoK, =0.7107 Å,=3.56cm^–1,R=0.061,R _w =0.099. C₈H₁₆N₃O₆S₂Na·2H₂O,2, orthorhombicPna2₁,a=17.964(8),b=10.157(1),c=8.263(4),Z=4, MoK, =0.7107 Å,=4.07 cm^–1,R=0.040,R _w =0.043. C₁₀H₂₀N₄O₆S₂·2H₂O,3, monoclinicP2₁/n,a=9.142(9),b=13.576(7),c=14.028(8),=94.096(8),Z=4, MoK, =0.7107 Å,=3.37 cm^–1,R=0.063,R _w =0.074. Compounds1, 2, and3 were prepared from the pH-dependent sulfomethylation of the di- and polyazamacrocycles.     

Crystal and molecular structure of [CpRu(PPh3)2(t-C4H9SH)]BF4

The structure of the [CpRu(PPh₃)₂(t-C₄H₉SH)]BF₄ complex was determined by X-ray diffraction techniques: monoclinic space groupP2₁/c,a=14.662(9),b=18.515(7),c=15.368(6)Å,=101.88(5)°,V=4082(6)ų,Z=4,R=0.049,R _w=0.057. The Ru is attached to two triphenylphosphine ligands, a cyclopentadienyl and thet-butylmercaptan. The Ru-S distance is 2.396(2)Å and the S-H distance is 1.289(2)Å.     

The synthesis and structure of 1,2,3,4-tetrahydro-2,4,4-trimethyl-8-nitroimidazo[1,5-d] [1,2,4]triazin-1-one,C8H11N5O3: A heterocycle with a rare ring system

The title compound (IV) was isolated as a by-product during the course of purification of 4-nitroimidazol-5-(N-methyl)hydrazide (II) by silica gel flash chromatography, employing chloroform-acetone (4:1) as the eluting solvent. The crystals are monoclinic, space groupP2₁/c,a=7.425(1),b=13.615(2),c=10.359(2) Å,=97.66(1)°,d _caled=1.44 g cm^–3, (MoK)=1.06 mm^–1,T=298 K. The number of unique reflections=2401, reflections withI3 (I)=1773;R=0.051,R _w =0.061. The bond distances inIV are: N-N, 1.419(3); N-C(=0), 1.359(3); N(H)-C(CH₃), 1.457(3); N(C)-C(CH₃), 1.501(3); N=C, 1.316(3); C=C, 1.368(3), N-C(=N), 1.353(3); N-C(=C), 1.367(2) Å.     

Synthesis and X-ray crystal structure of a five-coordinate d8 complex: [Pt((Me2NN)(PMe2)(PPh2))2Cl][Cl]

C₃₆H₅₀Cl₂N₆P₄Pt·2 MeCN,2, triclinic P¯1,a=11.720(2),b=12.153(2),c=16.196(3),=76.74(1),=84.90(1),=88.13(1),Z=2,R=0.051,Rw=0.051. Interaction of Me₂NN(PMe₂)(PPh₂),1, with Pt(COD)Cl₂, COD=1,5 cyclooctadiene, in THF yields the title compound,2, in quantitative yield. Compound2 was characterized spectroscopically as well as via an X-ray diffraction study.     

Crystal structures of two allotropic forms of Na2CoP2O7

Na₂CoP₂O₇ may be prepared in two allotropie forms:I, rose,M _r =278.85, triclinic, P1,a=9.735(2),b=10.940(3),c=12.289(4) Å,=148.78,=121.76(1), =68.38(2)°,V=566.8(2) ų,Z=4,D _meas=3.28(5) g cm^–3,D _calc=3.267 g cm^–3, (MoK)=0.71069 Å,=37.12 cm^–1, F(000)=540,T=298 K,R=5.4% for 2911 observed reflections; andII, blue,M _r =278.85, orthorhombic, P2₁cn,a=7.713(2) Å,b=10.271(4),c=15.378(6)°,V=1218.2(8) ų,Z=8,D _meas=3.06(5) g cm^–3,D _calc=3.040 g cm^–1, (MoK ) Å,=34.55 cm^–1, F(000)=1080,T=298 K,R=9.9% for 1450 observed reflections. Cobalt displays octahedral coordination to six oxygen atoms in the rose form whereas the metal coordination is tetrahedral in the blue form.     

Synthesis and X-ray structures of [H3O+·18-crown-6] n [MCl 4 n− ]; (M=Fe,n=1;M=Co,n=2); compounds which form liquid clathrates with aromatic solutions

The title compounds, [H₃O⁺·18-crown-6][FeCl ₄ ^– ] (1), and [H₃O⁺·18-crown-6]₂[CoCl ₄ ^2– ] (2), were prepared by air oxidation of Fe(CO)₅ for1, and Co₂(CO)₈ for2, in the presence of 18-crown-6, H₂O and HCl(g) in toluene. Liquid clathrates formed immediately for both species:1·4.3 C₇H₈ and2·3.7 C₇H₈.1 crystallizes in the orthorhombic space group P2₁ma witha=10.357(1),b=11.824(1),c=8.961(1) Å, andD _c=1.46 g cm^–3 forZ=2. Refinement based on 935 observed reflections led to a finalR value of 0.089.2 crystallizes in the monoclinic space group C2/c witha=16.225(1),b=11.522(1),c=20.136(1)Å, =97.75(2)^o, andD _c=1.37 g cm^–3 forZ=4. Refinement based on 1322 observed reflections led to a finalR value of 0.11.     

Structures of 355-1355-1355-1tricarbonyl: structural evidence for the near-electroneutrality of the dialkylacetal substituent

The structures of the (benzene dialkylacetal)tricarbonyl chromium complexes [⁶-C₆H₅-CH(OR)₂]Cr(CO)₆ (R=Me,1; Et,2), are reported. The compounds were examined as part of a study of the conformations of the tripodal tricarbonylchromium group. For [⁶-C₆H₅-CH(OMe)₂]Cr(CO)₃,1, monoclinic,P2₁/c (# 14),a=15.235(1) Å,b=6.5304(5) Å,c=12.702 Å, =103.197(1)^o,Z=4. For [⁶-C₆H₅-CH(OEt)₂]Cr(CO)₃,2, monoclinic,P2₁/c (# 14),a=9.859(3) Å,b=10.547(3) Å,c=15.138(3) Å, =108.42(2)^o,Z=4. The data show that the molecules adopt the expected three-legged piano stool structure. The carbonyl ligands in1 adopt an eclipsed arrangement with respect to the arene ring and its substituent, while those in2 are staggered. These conformations are consistent with the notion that the acetal substituent behaves largely as an electroneutral group, or at most as a weak electronic acceptor.     

Crystal structures of 4-amino-1,2,4-triazolidine-3,5-dione (urazine) (C2H4N4O2) and dichlorobis (4-amino-1,2,4-triazolidine-3,5-dione-N,O) copper (II) (C4H8Cl2CuN8O4)

Crystal structure analyses of urazine and of its adduct with CuCl₂ show that this ligand can exchange interactions of stacking that cannot be defined as simple - interactions. The copper atoms are octahedrally coordinated by two oxygen atoms and two aminic nitrogen from chelating uraxines and two chlorine atoms. The crystals of urazine are monoclinicP2₁ c:a=6.741(1),b=5.815(1),c=11.141(2) Å,/gb=92.13(1)°,V _c=436.4(1) ų,Z=4,R=0.0402 for 714 independent observed reflections; the crystals of [CuCl₂(urazine)₂] are triclinicP¯1:a=5.236(1),b=6.662(1),c=8.411(1) Å,=93.00(1),=104.87(1), =105.69(1)°,V _c=270.66(8) ų,Z=1,R=0.0380 for 875 independent observed reflections.     

Crystal and molecular structures of 1-(2-iso butylylcarbamoyl propan-2-ylamino) 3-(1-naphthyloxy)propan-2-ol hydrochloride (1) (C21H31N2O3Cl) and 1-(2-isobutyloxycarbonylo propan-2-ylamino) 3-(1-naphthyloxy)propan-2-ol hydrochloride (2) (C21H30NO4Cl)

This paper shows the crystal structures of two new-adrenergic antagonists, derivatives of propranolol, which were determined with three-dimensional x-ray diffraction data. The space groups and unit-cell parameters are: compound1 (C₂₁H₃₁N₂O₃Cl) monoclinic space groupP2₁/c,a=20.523(4),b=6.909(2),c=15.950(2) Å,=105.03(1)°; compound2 (C₂₁H₃₁NO₄Cl) monoclinic space groupP2₁/c,a=6.364(2),b=36.043(8),c=10.149(1) Å,=104.48(2)°. The structures were solved with direct methods, and refined with full-matrix least-squares techniques toR indices of 0.059 and 0.067, respectively. The-CH(OH)-CH₂-NH-sections of the side chains show the conformation approximate togauche.     

Solid state conformational parameters in dibenzo[b,f]heteroepin drugs: Crystal structures of 3-methoxy-10-methyl-11-phenyldibenzo[b,f]thiepine and 3-allyloxy-10-ethyl-11-phenyldibenzo[b,f]oxepine

The structures of 3-methoxy-10-methyl-11-phenyldibenzo[b, f]thiepine (I) [C₂₂H₁₈OS, tetragonal,I4₁/a, witha=33.81(1),c=6.065(5)Å,Z=16] and 3-allyloxy-10-ethyl-11-phenyldibenzo[b,f]oxepine (II) [C₂₅H₂₂O₂, mono-clinic,P2₁/c,a=12.115(7),b=16.316(9),c=10.136(7)Å,=105.05(9)°,Z=4] have been determined by the symbolic addition procedure and refined by least-squares method to anR of 0.090 for 784 diffractometer-measured reflections (I) and to anR of 0.083 for 442 reflections (II). The dihedral angle between the phenyl-ring mean planes is 111.3° in (I) and 121.1° in (II), the middle seven-membered ring has the boat conformation, and the tricyclic moiety has twist and skew values of 6° and 0.42 Å in (I) and 0.3° and 0.79 Å in (II). The overall conformational characteristic for the tricyclic (6, 7, 6)-dibenzo[b,f]heteroepin derivatives have been reviewed to gain a better understanding of what requirements may be important for interaction of drugs of this class at the receptor site.     

The structures of some iminium salts. Crystal structures and13C NMR studies of 3-aryl-2-propenylideniminium salts

The X-ray crystal structures ofE-N, N-dimethyl-3-phenyl-2-propenylideniminium perchlorate,1, andE-N, N-dimethyl-3-(p-methoxyphenyl)-2-propenylideniminium perchlorate,2, have been determined.E-N,N-dimethyl-3-phenyl-2-propenylideniminium perchlorate, (C₁₁H₁₄N⁺)(ClO₄ ^–),1, is orthorhombic:Pmcn (No. 62)a=6.595(1),b=18,288(4),c=10.216(2) Å,Z=4.E-N, N-dimethyl-3-(p-methoxyphenyl)-2-propenylideniminium perchlorate, (C₁₂H₁₆NO⁺)(ClO₄ ^–),2, is triclinic:P1 (No. 2) with cell dimensionsa=6.862(1),b=9.830(2),c=13.376(3) Å,=119.05(1),=114.99(2), =90.79(2)°, andZ=2. Data for both crystals were collected with the use of MoK radiation and a Syntex P2₁ diffractometer. The crystal structures were solved by standard methods and refined toR ₁=0.0688,R ₂=0.0772 for1 andR ₁=0.0790 andR ₂=0.0757 for 2 based on 869 and 1765 independent reflections, respectively. The bond distances are consistent with a highly localized structure with the positive charge situated principally in the iminium moiety. The¹³C NMR spectra of these salts were obtained on the crystalline solids by CPMAS methods. Since the^13C chemical shifts of the salts were very similar, in both solution and solid states, it was concluded that the structures of the salts were comparable in both phases and were analogous.     

Crystal and molecular structure of (exo)-2-methoxycarbonyl-5-ethoxycarbonyl-4,5,6,11b-tetrahydroisoxazolidino-[2,3-a]-β-carboline,C18H20N2O5

The structure of the title compound, C₁₈H₂₀N₂O₅, was determined by X-rays atT=290 K.M _r =344.366, monoclinic, space groupP2₁/c,a=13.7850(8),b=8.8951(7),c=15.1603(11) Å, =111.410(6)°,V _c =1730.7 ų,Z=4,D _x =1.322 Mgm^–3. Cu K radiation (graphite crystal monochromator, =1.54178 Å),(Cu K)=7.69 cm^–1. Final conventionalR-factor=0.057,R _w =0.076 for 2160 observed reflections and 271 variables. The structure was solved usingMultan.     

Crystal and molecular structures of 1-phenyl-4,6-dimethylpyrimidine-2-thionetetraaquacobalt(II) dinitrate complex and of two pyrimidine thiones

The crystal structures of 1-phenyl-4,6-dimethylpyrimidine-2-thionetetraaquacobalt(II) dinitrate (I)a=9.032(2),b=12.458(2),c=18.067(3)Å,=103.25(3)°,Z=4;P2₁/c,R=0.049; 1-phenyl-4,6-dimethylpyrimidine-2-thione (II)a=12.005(3),b=10.090(2),c=9.649(2)Å,=104.4(1)°,Z=4;P2₁/n,R=0.038; and 4,6-dimethylpyrimidine-2-thione (III)a=15.485(3),b=13.255(3),c=7.127(2)Å,=104.3(1)°,Z=8,C2/c,R=0.041 are reported. In (I) the coordination around the cobalt(II) is distorted octahedral involving one ligand moleculevia sulphur and nitrogen atoms and four water molecules. It is relevant that the parameters in the complexed ligand are not different from those found in the uncomplexed one (II), excepting the distances on the nitrogen atom directly involved in the coordination. Bond distances and angles in compound (III) agree with those found in (II).