Studies on phosphatidylglycerol with triple quadrupole tandem mass spectrometry with electrospray ionization: Fragmentation processes and structural characterization

Negative-ion low-energy collisionally activated dissociation (CAD) tandem mass spectrometry of electrospray-produced ions permits structural characterization of phosphatidylglycerol (PG). The major ions that identify the structures arise from neutral loss of free fatty acid substituents ([M − H − R _x CO₂H]⁻) and neutral loss of the fatty acids as ketenes ([M − H − R′ _x CH = C = O]⁻), followed by consecutive loss of the glycerol head group. The abundances of the ions arising from neutral loss of the sn-2 substutient as a free fatty acid ([M − H − R₂CO₂H]⁻) or as a ketene ([M − H − R′₂CH = C = O]⁻) are greater than those of the product ions from the analogous losses at sn-1. Nucleophilic attack of the anionic phosphate site on the C-1 or the C-2 of the glycerol to which the carboxylates attached expels the sn-1 (R₁CO₂⁻) or the sn-2 (R₂CO₂⁻) carboxylate anion, resulting in a greater abundance of R₂COO⁻ than R₁COO⁻. These features permit assignments of fatty acid substituents and their position in the glycerol backbone. The results are also consistent with our earlier findings that pathways leading to those losses at sn-2 are sterically more favorable than those at sn-1. Fragment ions at m/z 227, 209 and 171 reflect the glycerol polar head group and identify the various PG molecules. Both charge-remote fragmentation (CRF) and charge-drive fragmentation (CDF) processes are the major pathways for the formation of [M − H − R _x COOH]⁻ ions. The CRF process involves participation of the hydrogen atoms on the glycerol backbone, whereas the CDF process involves participation of the exchangeable hydrogen atoms of the glycerol head group. The proposed fragmentation pathways are supported by CAD tandem mass spectrometry of the analogous precursor ions arising from the H-D exchange experiment, and further confirmed by source CAD in combination with tandem mass spectrometry.     

Glycosylated platycosides: Identification by enzymatic hydrolysis and structural determination by LC–MS/MS

In this study, enzymatic hydrolysis and chemometric methods were utilized to discriminate glycosylated platycosides in the extract of Platycodi Radix by LC–MS. Laminarinase, whose enzymatic activity was evaluated using gentiobiose and laminaritriose, was a suitable enzyme to identify the glycosylated platycosides. The laminarinase produced deapi‐platycodin D and platycodin D from the isolated deapi‐platycoside E and platycoside E through the loss of two glucose units by enzymatic reaction, respectively. After hydrolyzing a crude extract by laminarinase, the reconstructed total ion chromatogram generated by a chemometric technique sorted peaks of deglycosylated platycosides easily. Structural information of the glycosylated isomers was revealed through fragment ions generated by the sodiated C_0β ion corresponding to reduced disaccharides in the positive MS⁴ spectra. Characteristic fragment ions of Glc‐(1→6)‐Glc moieties were observed through ring cleavages of ^0,2A_0β, ^0,3A_0β, and ^0,4A_0β, whereas Glc‐(1→3)‐Glc moieties produced only ^0,3A_0β ions. Lithium‐adducted platycosides allowed more detailed structural analysis of glycosidic bond cleavage corresponding to Y_1β and B_1β in addition to ring cleavage.     

Negative Ion CID Fragmentation of <Emphasis Type="Italic">O-</Emphasis>linked Oligosaccharide Aldoses—Charge Induced and Charge Remote Fragmentation

Collision induced dissociation (CID) fragmentation was compared between reducing and reduced sulfated, sialylated, and neutral O-linked oligosaccharides. It was found that fragmentation of the [M – H]^– ions of aldoses with acidic residues gave unique Z-fragmentation of the reducing end GalNAc containing the acidic C-6 branch, where the entire C-3 branch was lost. This fragmentation pathway, which is not seen in the alditols, showed that the process involved charge remote fragmentation catalyzed by a reducing end acidic anomeric proton. With structures containing sialic acid on both the C-3 and C-6 branch, the [M – H]^– ions were dominated by the loss of sialic acid. This fragmentation pathway was also pronounced in the [M – 2H]^2– ions revealing both the C-6 Z-fragment plus its complementary C-3 C-fragment in addition to glycosidic and cross ring fragmentation. This generation of the Z/C-fragment pairs from GalNAc showed that the charges were not participating in their generation. Fragmentation of neutral aldoses showed pronounced Z-fragmentation believed to be generated by proton migration from the C-6 branch to the negatively charged GalNAc residue followed by charge remote fragmentation similar to the acidic oligosaccharides. In addition, A-type fragments generated by charge induced fragmentation of neutral oligosaccharides were observed when the charge migrated from C-1 of the GalNAc to the GlcNAc residue followed by rearrangement to accommodate the ^0,2A-fragmentation. LC-MS also showed that O-linked aldoses existed as interchangeable α/β pyranose anomers, in addition to a third isomer (25% of the total free aldose) believed to be the furanose form.     

Mintaimycins,a Group of Novel Peptide Metabolites from Micromonospora sp. C-3509

A group of peptide metabolites (1–4), designated as mintaimycins, were isolated from Micromonospora sp. C-3509. The planar structures of mintaimycins were determined by combination of mass spectrometry, 1D and 2D NMR spectroscopy, and the stereochemistry of mintaimycins were partially resolved by Marfey’s or Mosher’s method. Mintaimycins featured a central β-methylphenylalanine or phenylalanine linked at its amino group with 5-methyl-2-hexenoic acid, and at its carboxyl group with 5-hydroxy-norleucine or leucine that combined a derivative of hexanoic acid or 4-methylpentanoic acid. Mintaimycin A₁ (1), the principal component, was found to exhibit the biological activity of inducing pre-adipocyte differentiation of 3T3-L1 fibroblast cells at 10.0 μmol/L.     

Study of the Fragmentation of D-Glucose and Alkylmonoglycosides in the Presence of Sodium Ions in an Ion-Trap Mass Spectrometer

Abstract

Using electrospray ion-trap mass spectrometry, the fragmentation of D-glucose and alkylmonoglycopyranosides (alkyl-GPs) was studied. In the presence of Na⁺, B₁ and ^0,2A fragmentations were observed. The alkyl-GPs also showed a ^2,5Afragmentation. A cluster containing no carbon atoms and adducts of this cluster with neutral molecules were observed. Standards of alkylmonoglycofuranosides (alkyl-GFs) were not available; however, their fragmentation was studied by high-performace liquid chromatography–mass spectrometry (HPLC-MS) and HPLC-MS² using an industrial mixture of alkylpolyglycosides. The cluster and its adducts were more easily formed by the alkyl-GPs than by the alkyl-GFs, but the ^0,2A cross-ring cleavage was more easily produced by the alkyl-GFs.     

Mass spectrometry in structural and stereochemical problems—CCXLIV : The influence of substituents and stereochemistry on the mass spectral fragmentation of progesterone

The complete high resolution mass spectra of progesterone (Δ⁴-pregnene-3,20-dione) and twenty-nine stereoisomers and alkyl substituted analogs have been analyzed with the aid of the recently developed computer program INTSUM. Progesterone analogs with “normal” configuration at the six chiral skeletal carbon atoms give rise to abundant ions corresponding to cleavage of the 1–2 and 3–4 bonds (ketene elimination), to cleavage of the 6–7 and 9–10 bonds (ring B cleavage), and to cleavage of the 13–17 and 15–16 bonds (partial ring D cleavage); these reactions are frequently followed by elimination of alkyl radicals. Alkyl groups at C-6 and C-10 exert a pronounced influence on the formation and fragmentation of the [M-ketene] ions. Reversal of configuration at C-10 increases the importance of ring B cleavage, whereas reversal at C-17 favors the partial cleavage of ring D. The fragmentation of 17-alkylprogesterones differs significantly from the general pattern, with acetyl loss (cleavage of the 17–20 bond) and partial ring D cleavage as the predominating reactions. Loss of ring D by cleavage of the 13–17 and 14–15 bonds is not an important reaction of progesterones. Direct interaction of the two ketonic functions was not observed.     

Mass spectrometry of 3-methoxy fatty acid methyl esters

Fatty acids with a hydroxyl moiety at the C-3 position are found widely in bacterial lipids, but only rarely in mammalian lipids. The mass spectra of the methyl ether derivative of these hydroxy acids exhibit an intense ion at m/e 75, rather than the rearrangement ion at m/e 74 more typical of fatty acid methyl esters. The mass spectrometric behavior of several 3-methoxy fatty acid methyl esters were studied, and the origin of the unique ion at m/e 75 was established using ¹⁸O and ²H labeled analogs and metastable ion transitions. this ion was shown to arise from the loss of ketene from the 3,4 cleavage ion at m/e 117.     

Structural characterization of xylo-oligosaccharides from corncob residues

The structure of xylo-oligosaccharides (XOSs) derived from corncob residues was elucidated by means of FT-IR, GC-MS, ESI-CID-MS/MS, and 2D-NMR. GC-MS analysis confirmed that the partially methylated acetyl alditol derivatives of XOS were 1,5-Ac₂-2,3,4-Me₃-xylitol and 1,4,5-Ac₃-2,3-Me₂-xylitol. The C- and Y-type ions from glycosidic bond cleavage and ^0,2A (?60) and ^0,2A-H₂O (?78) ions from cross-ring cleavage of XOS were produced in ESI-CID-MS/MS. Both results indicated that the XOSs were (1→4)-linked xylans with a degree of polymerization from 2 to 7. The anomeric configuration and glycosidic linkage of XOSs were determined by 2D-NMR. Eventually, it was suggested that the structure of these XOSs was β-Xyl-(1→4)-[β-Xyl-(1→4)]_n-α/β-Xyl (n = 0–5) without other substituents.     

Matrix IR studies on hydrogen-bonded complexes of hydrogen chloride and hydrogen bromide with ketene

Infrared spectra of matrices codeposited Ar/HX (X=Cl, Br) with Ar/H₂CCO mixtures have been examined. Isotopic substitutions (HX, DX, H₂CCO, D₂CCO) showed that ketene formed the 1:1 hydrogen-bonded complex with HX. The HX stretching modes were observed at 2684 cm⁻¹ in the H₂CCO–HCl complex and at 2384 cm⁻¹ in the H₂CCO–HBr complex. The ν₁ modes of the ketene submolecules were shifted to low frequency and the ν₉ modes to high frequency. It was proposed for the structure of the complex that the acid proton is bonded to the C=C pi electron system.     

Determination of phosphorylation sites in lipooligosaccharides from Pseudoalteromonas haloplanktis TAC 125 grown at 15 degrees C and 25 degrees C by nano-electrospray ionization quadrupole time-of-flight tandem mass spectrometry

Lipooligosaccharides (LOSs) are macromolecules present on the external cellular membrane of Gram-negative bacteria, structurally made of two distinct regions, lipid A and Core. By varying their growth temperature, bacteria such as psychrophiles change the phosphorylation distribution of the LOSs produced. The level of phosphorylation and the phosphate group positions in LOSs produced by the extremophile psychrophilic bacterium Pseudoalteromonas haloplanktis TAC 125, grown at 15 degrees C and 25 degrees C, were investigated by nano-electrospray ionization quadrupole time-of-flight mass spectrometry (nanoESI-QTOF-MS) and tandem mass spectrometry (MS/MS). The samples, obtained by phenol/chloroform/petroleum ether (PCP) extraction of dried cells, were treated with hydrazine at 37 degrees C in order to reduce the heterogeneity by removal of the ester-linked fatty acid moieties. The molecular ion distributions in these LOS fractions were investigated in negative ion mode. Based on these data it was postulated that the sample grown at 25 degrees C contained four phosphate groups while that at 15 degrees C contained three. In order to determine phosphorylation sites in sugar chains, the samples were submitted to low collision energy MS/MS for sequencing. In the sample with three phosphates, one was found to be linked to the tetrasaccharide Core region, more precisely to position C-4 of the Kdo unit. The two remaining phosphate groups were both linked to the 2-acylamide-2-deoxy-D-glucopyranose of the lipid A moiety, and two possible distributions could be postulated on the basis of the fragmentation pattern obtained; in the first case both phosphate groups are linked as a pyrophosphate moiety to position C-1 of the proximal glucosamine (reducing residue), while in the second case one phosphate is linked to position C-1 of the proximal glucosamine and the other to position C-4' of the distal glucosamine (non-reducing residue). This distribution was also found in the lipid A moiety of the tetraphosphorylated sample grown at 25 degrees C, which bears two phosphate groups on the Core region, one on position C-4 of the Kdo and the other on position C-7 or C-8 of the same residue. The phosphate locations were derived from the intra-ring cleavage ions of sugar moieties in the LOSs obtained by an optimized CID procedure using negative ion QTOF-MS/MS.     

The Mechanism of a Retro-Diels–Alder Fragmentation of Luteolin: Theoretical Studies Supported by Electrospray Ionization Tandem Mass Spectrometry Results

The mechanisms of retro-Diels–Alder fragmentation of luteolin are studied theoretically using the Density Functional Theory method (B3LYP hybrid functional) together with the 6-311++G(d,p) basis set and supported by electrospray ionization tandem mass spectrometry (ESI-MS) results. The reaction paths leading to the formation of ^1,3A⁻ and ^1,3B⁻ fragment ions observed as the main spectral features in the ESI-MS spectrum are described and discussed, including the structures of the transition states and intermediate products. The heights of the activation energy barriers which have to be overcome along the reaction paths corresponding to 1,3-retrocyclization cleavage of the ionized luteolin are predicted to span the 69–94 kcal/mol range (depending on the initial isomeric structure) for the concerted retrocyclization mechanism and the 60–89 kcal/mol (first barrier) and 24–52 kcal/mol (second barrier) barriers for the stepwise mechanism (also depending on the initial isomeric structure). It is also demonstrated that the final fragmentation products (^1,3A⁻ and ^1,3B⁻) are in fact represented by various isomeric systems which are not experimentally distinguishable. In addition, the absence of the spectral feature corresponding to the [M-B]⁻ fragment ion formed by the rupture of the C-C bond connecting luteolin’s B and C rings (which does not occur during the ESI-MS experiment) is explained by much larger energy barriers predicted for such a process.     

Fatty acid neutral losses observed in tandem mass spectrometry with collision‐induced dissociation allows regiochemical assignment of sulfoquinovosyl‐diacylglycerols

A full characterization of sulfoquinovosyldiacylglycerols (SQDGs) in the lipid extract of spinach leaves has been achieved using liquid chromatography/electrospray ionization‐linear quadrupole ion trap mass spectrometry (MS). Low‐energy collision‐induced dissociation tandem MS (MS/MS) of the deprotonated species [M ? H]^? was exploited for a detailed study of sulfolipid fragmentation. Losses of neutral fatty acids from the acyl side chains (i.e. [M ? H ? RCOOH]^?) were found to prevail over ketene losses ([M ? H ? R'CHCO]^?) or carboxylates of long‐chain fatty acids ([RCOO]^?), as expected for gas‐phase acidity of SQDG ions. A new concerted mechanism for RCOOH elimination, based on a charge‐remote fragmentation, is proposed. The preferential loss of a fatty acids molecule from the sn‐1 position (i.e. [M ? H ? R₁COOH]^?) of the glycerol backbone, most likely due to kinetic control of the gas‐phase fragmentation process, was exploited for the regiochemical assignment of the investigated sulfolipids. As a result, 24 SQDGs were detected and identified in the lipid extract of spinach leaves, their number and variety being unprecedented in the field of plant sulfolipids. Moreover, the prevailing presence of a palmitic acyl chain (16:0) on the glycerol sn‐2 position of spinach SQDGs suggests a prokaryotic or chloroplastic path as the main route for their biosynthesis. Copyright © 2013 John Wiley & Sons, Ltd.     

Study of selected ions in the ammonia desorption chemical ionization mass spectra of peracetylated gentiobiose and two isotopically labelled peracetylated gentiobioses

The ammonia desorption chemical ionization (NH₃-DCI) mass spectra of peracetylated gentiobiose (1) and two isotopically labelled gentiobioses (2 and 3) were examined. Compound 2 is labelled with trideuteroacetyl groups in the non-reducing moiety and 3 with trideuteroacetyl groups in the reducing moiety. It is shown that the [M + NH₄ – 42]⁺ ion is not formed direct from [M + NH₄]⁺ by loss of ketene but appears to be formed by way of a nucleophilic acyl substitution reaction resulting in a neutral species which complexes with NH₄⁺. The disaccharides undergo cleavage at either side of the glycosidic oxygen joining the two sugar residues, a process which is accompanied by addition of H or CH₃CO to afford neutral species which complex with NH₄⁺. The structures of the ions resulting from H transfer have been inferred by comparison of their mass-analysed ion kinetic energy (MIKE) spectra with MIKE spectra of the [M + NH₄]⁺ ions of compounds of established structure. A ring fragmentation reaction of 1, 2 and 3 is reported.     

Die massenspektrometrische Fragmentierung von Neopentylpolyolestern. 1—Pentaerythrittetrafettsäureester

The fragmentation of the homologous fatty acid tetraesters of pentaerythritol (C-2 to C-14) upon electron impact was investigated. The main fragment ions are [M? RCOO]⁺ and [M? RCOOH]⁺, for which cyclic acetal structures are postulated. Subsequent fragmentation was elucidated by ‘direct analysis of daughter ion’ (DADI) measurements and high resolution measurements. Esters of branched fatty acids can be distinguished from esters of n-fatty acids by characteristic ions. Isomeric esters of n-fatty acids cannot be separated by gas chromatography but identification is also possible by mass spectrometry.     

槲皮素与桑色素ESI-MS裂解行为的比较分析

运用量子化学方法辅助解析并比较槲皮素与桑色素在电喷雾离子阱质谱(ESI-MS)负离子模式下的裂解行为。依据密度泛函理论(Density functional theory,DFT),在B3LYP/6-31G(d)水平,对槲皮素与桑色素的分子空间构型进行优化,确定稳定的几何构型与去质子化位点,在RB3LYP/6-31+G(2d,2p)水平,计算相对碎裂电压下的二级质谱中碎片离子处于稳定状态时的能量,通过比较准分子离子稳定构型并结合基组重叠误差(Basis set superposition error,BSSE)校正后的键解离能(Bond dissociation energy,BDE),推导了质谱碎裂过程。结果显示:槲皮素的稳定构型为A,B,C环处于同一平面,桑色素上的2'-OH使得B环与AC环之间翻转一定角度,二面角D(1,2,1',6')为-134.662 4°。槲皮素与桑色素的质谱裂解过程主要通过C环跨环裂解产生,且具有多种开裂方式,开裂先后顺序为:1,2开裂、0,2开裂、1,3开裂、1,4开裂与0,4开裂,分别生成碎片离子1,2A-,0,2A-,1,3A-,1,4A-与0,4A-,并逐步进行后续裂解,而2'-OH的存在促进了桑色素的裂解。该研究为进一步揭示黄酮醇类化合物的质谱裂解规律提供了理论依据。     

Mass spectra of 3-arylidene-1H-2,3-dihydro-1,4-benzodiazepin-2-ones

The scheme of the fragmentation of arylidene derivatives of 5-phenyl-1,4-benzodiazepin-2-ones was established by means of high-resolution mass spectrometry. One of the principal fragmentation pathways of these compounds is cleavage of the 2C-3C and 4N-5C bonds to give two fragments. Depending on the substituents in the arylidene portion of the molecule, the charge is localized primarily on one or the other of these fragments. The mechanism of the formation of the [ArCH₂]⁺ ions observed in the mass spectra of all of the investigated compounds was established on the basis of the mass spectrum of the 1N-deuterium-labeled compound. The specific fragmentation pathways due to the ortho effect of the nitro group are discussed.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 12, pp. 1690–1696, December, 1976.     

Influence of several factors on potential-modulated DNA cleavage by the Cu(en)2 and Cu(EDTA) complexes

Potential-modulated DNA cleavage in the presence of copper–ethylenediamine (en) and –ethylenediamine tetraacetic acid (EDTA) complexes was investigated at a gold electrode in a thin layer cell. DNA can be efficiently cleaved through production of active oxygen species at −0.50 V (vs. Ag/AgCl/KCl(sat)) by reducing Cu(en)₂²⁺ to Cu(en)₂⁺ or Cu(EDTA)²⁻ to Cu(EDTA)³⁻. The extent of DNA cleavage increased as the working potential was shifted more negative and the electrolysis time was increased in air-saturated solution. When a small flow of O₂ was passed through the solution during electrolysis, the extent of DNA cleavage was dramatically enhanced. In the absence of Cu(en)₂²⁺ or Cu(EDTA)²⁻ complex, slight DNA cleavage was observed at a more negative working potential due to the reduction of oxygen at the electrode. This observation suggests that potential-modulated DNA cleavage was caused mainly by electrochemical reduction of the Cu(en)₂²⁺ or Cu(EDTA)²⁻ complex in the presence of oxygen. The cleaved DNA fragments were separated by high performance liquid chromatography (HPLC). The experimental results proved that this method of potential-modulated DNA cleavage by Cu(en)₂²⁺ and Cu(EDTA)²⁻ complexes is simple, mild and highly efficient.     

Determination of the anomeric configuration of glycosyl esters of nucleoside pyrophosphates and polyisoprenyl phosphates by fast-atom bombardment tandem mass spectrometry

Collision-induced dissociation of the deprotonated molecules of glycosyl esters of nucleoside pyrophosphates and polyisoprenyl (dolichyl and polyprenyl) phosphates results in distinct fragmentation patterns that depend on cis-trans configuration of the phosphodiester and 2″ (or 2′, respectively)-hydroxyl groups of the glycosyl residue. At the collision-offset voltage of 0. 5 V, sugar nucleotides with cis configuration produce only one very abundant fragment of nucleoside monophosphate, whereas compounds with trans configuration give weak signals for nucleoside di- and mono-phosphates and their dehydration products. These fragmentation patterns are largely preserved at higher collision energy, with the exception that, for sugar nucleotides with trans configuration, the characteristic signals are much more abundant and a novel diagnostic fragment of [ribosyl(deoxyribosyl)-5′-P₂O₅ — H]^? is generated. In the case of polyisoprenyl-P-sugars, polyisoprenyl phosphate ion is the only fragment observed for compounds with trans configuration, whereas in compounds with cis configuration, this ion is accompanied by another abundant fragment, which is derived from the cleavage across the sugar ring and corresponds to [polyisoprenyl-PO₄-(C₂H₃O)]^?. The relative intensity ratio of the latter ion to the [polyisoprenyl-HPO₄]^? ion is close to 1 for compounds with cis configuration, but it is only about 0. 01 for compounds with trans configuration. This ratio may serve, therefore, as a diagnostic value for determination of the anomeric configuration of glycosyl esters of polyisoprenyl phosphates. It is proposed that the observed differences in fragmentation patterns of cis-trans sugar nucleotides and polyisoprenyl-P-sugars could be explained in terms of kinetic stereoelectronic effect, and a speculative mechanism of fragmentation of compounds with trans configuration is presented. For compounds with cis configuration, formation of a hydrogen bond between the C-2″(2′) hydroxyl and the phosphate group could play a crucial role in directing the specific fragmentation reactions. Consequently, the described empirical rules would hold only for compounds that have a free 2″(2′)-hydroxyl group and no alternative charge location. Owing to its simplicity, sensitivity, and tolerance of impurities, fast-atom bombardment-tandem mass spectrometry represents a suitable method for determination of the anomeric linkage of glycosyl esters of nucleoside pyrophosphates and polyisoprenyl phosphates if the absolute configuration of glycosyl residue is known and the compound fulfills the above-mentioned requirements.