Comparison of the pH‐dependent formation of His and Cys heptapeptide complexes of nickel(II), copper(II), and zinc(II) as determined by ion mobility‐mass spectrometry

The analog methanobactin (amb) peptide with the sequence ac‐His₁‐Cys₂‐Gly₃‐Pro₄‐Tyr₅‐His₆‐Cys₇ (amb_5A) will bind the metal ions of zinc, nickel, and copper. To further understand how amb_5A binds these metals, we have undertaken a series of studies of structurally related heptapeptides where one or two of the potential His or Cys binding sites have been replaced by Gly, or the C‐terminus has been blocked by amidation. The studies were designed to compare how these metals bind to these sequences in different pH solutions of pH 4.2 to 10 and utilized native electrospray ionization (ESI) with ion mobility‐mass spectrometry (IM‐MS) which allows for the quantitative analysis of the charged species produced during the reactions. The native ESI conditions were chosen to conserve as much of the solution‐phase behavior of the amb peptides as possible and an analysis of how the IM‐MS results compare with the expected solution‐phase behavior is discussed. The oligopeptides studied here have applications for tag‐based protein purification methods, as therapeutics for diseases caused by elevated metal ion levels or as inhibitors for metal‐protein enzymes such as matrix metalloproteinases.     

Determination of metal-cofactors in respiratory chain complexes by total-reflection X-ray fluorescence spectrometry (TXRF)

Total Reflection X-Ray Fluorescence Spectrometry (TXRF) offers many advantages for the detection of trace elements in enzymes as compared to other well known analytical techniques like flame-AAS or ICP-AES because of the significantly smaller amounts of sample required. Without any decomposition, elements like Fe, Ni, Cu, Zn, Mn and Mo could be determined with high accuracy, in spite of the large bio-organic matrix. Besides the metals also sulfur can be determined in protein samples. The two terminal oxidases, cytochrome c oxidase and quinol oxidase, isolated from the soil bacterium Paracoccus denitrificans, were transferred from their usual salt buffer into a solution of 100 mmol/L tris(hydroxymethyl)aminomethane (TRIS) acetate containing an appropriate detergent. By this procedure an improved signal/noise ratio is attained. The data for cytochrome c oxidase are in good agreement with values obtained by ICP-AES. Further results of quinol oxidase, which has different element ratios, also fit the expected values. The investigations lead to the conclusion that the method is well suited for the quantitative determination of metals in enzymes, and in particular their molar ratios, and requires only small amounts of the biological sample without any extensive pretreatment.     

Determination of metal-cofactors in respiratory chain complexes by total-reflection X-ray fluorescence spectrometry (TXRF)

Total Reflection X-Ray Fluorescence Spectrometry (TXRF) offers many advantages for the detection of trace elements in enzymes as compared to other well known analytical techniques like flame-AAS or ICP-AES because of the significantly smaller amounts of sample required. Without any decomposition, elements like Fe, Ni, Cu, Zn, Mn and Mo could be determined with high accuracy, in spite of the large bio-organic matrix. Besides the metals also sulfur can be determined in protein samples. The two terminal oxidases, cytochrome c oxidase and quinol oxidase, isolated from the soil bacterium Paracoccus denitrificans, were transferred from their usual salt buffer into a solution of 100 mmol/L tris(hydroxymethyl)aminomethane (TRIS) acetate containing an appropriate detergent. By this procedure an improved signal/noise ratio is attained. The data for cytochrome c oxidase are in good agreement with values obtained by ICP-AES. Further results of quinol oxidase, which has different element ratios, also fit the expected values. The investigations lead to the conclusion that the method is well suited for the quantitative determination of metals in enzymes, and in particular their molar ratios, and requires only small amounts of the biological sample without any extensive pretreatment. Received: 17 June 1997 / Revised: 21 November 1997 / Accepted: 27 November 1997     

Polymeric Catalysts

The present-day position in the field of polymeric catalysts is outlined. The following selected groups of polymeric catalysts are discussed: synthetic hydrolases, immobilized enzymes, phase-transfer catalysts, nucleophilically active bases, polymers with conjugated π-systems, photosensitizers, polymers as carriers for catalytically active metals or ions, and immobilized homogeneous catalysts. Polymeric catalysts have the following valuable properties: insoluble polymeric catalysts are readily separable from reaction solutions and can often be re-used without loss of activity; a hydrophobic matrix protects the organometallic active center from deactivation by oxygen and water; by fixation of finely divided metals on an ion exchanger, multistage reactions may be effected successively in one reactor. Polymeric carriers may influence the catalytic properties; for example, in the case of immobilized enzymes on polyionic carriers the pH of the activity maximum may be shifted.     

Metal-induced oxidative burst in isolated human neutrophils

Experimental evidence have been suggesting that the toxicity of metals may involve inflammatory processes, with subsequent sustained overproduction of pro-oxidant reactive species, leading to indirect toxic effects, namely genotoxicity. Neutrophils, as important mediators of the innate defence systems, may have a hitherto not known role on these metal-induced adverse effects. Thus, the aim of the present study was to evaluate the putative activation of human neutrophils' oxidative burst by two groups of metals, the first group being able to undergo redox-cycling reactions (iron, copper, chromium and cobalt), whilst the primary route for the toxicity of the second group is not dependent on redox reactions (mercury and cadmium). The generation of reactive oxygen species (ROS) by metal-stimulated neutrophils was measured using the chemiluminometric probe luminol. Appropriate scavengers and metabolizing enzymes were subsequently used to identify the reactive species produced. The modulatory effects of metals on phorbol myristate acetate (PMA)-activated neutrophils were also studied. To evaluate the contribution of protein kinase C (PKC) on metal stimulatory effect, we used the specific inhibitor of PKC Gö6983. The obtained results showed that, in the present experimental conditions, only Cd (II) has the ability to stimulate the production of superoxide radical (O₂⁻), hydrogen peroxide (H₂O₂), and hypochlorous acid (HOCl) in isolated human neutrophils. The same metal showed a synergistic effect with PMA. It was also demonstrated that Cd (II) induces neutrophils' oxidative burst mainly via activation of PKC, precluding a significant contribution of other cellular pathways for ROS generation mediated by this metal. These observations indicate that the sustained activation of human neutrophils may contribute for the long term adverse effects on human health mediated by Cd (II).     

Evaluation of the protein concentration in enzymes via determination of sulfur by total reflection X-ray fluorescence spectrometry — limitations of the method

Total reflection X-ray fluorescence spectrometry (TXRF) offers many advantages for the identification of trace elements in biological samples like proteins, enzymes, tissues or plants. Because of difficult and time consuming isolations and cleaning procedures enzyme samples are often available in small amounts only. Using TXRF without any preliminary treatment, a ‘screening’ of such samples to determine the element composition is of interest and importance. Transition metals like Fe, Ni, Cu, Mo and the alkaline earth metal Ca may be determined with high accuracy. A further aspect of the investigation of enzymes is the simple and simultaneous determination of light elements. Sulfur, especially, is of interest. This element is a component of two amino acids, methionine and cysteine, and of iron–sulfur clusters and may be used for easy and simultaneous calculation of the protein concentration. Hence quantitative determination of sulfur by TXRF allows a cross-check regarding of conventional quantitative determination of protein concentration by, e.g. the Lowry method. On the basis of two selected enzymes of different origins and molecular weights this paper will demonstrate the influence of bio-organic matrix and different buffer media on sulfur determination by TXRF. The influence of layer thicknesses of the dry residues and absorption or scattering effects will be discussed. The results indicate that in enzymes with low molecular weights and minor amounts of buffer components a reliable determination of sulfur is possible. By contrast, for enzymes stored in higher buffer concentrations poorer results are given on account of the matrix effects described.     

Determination of metal content in superoxide dismutase enzymes by capillary electrophoresis†

Superoxide dismutases are antioxidant scavenger enzymes that contain a metal cofactor (copper, zinc, iron, and manganese) in their active site. Metal content measurement is one of the essential steps to characterize enzyme biological activity. We have developed a capillary electrophoretic protocol for the determination of the metal content in superoxide dismutase enzymes. The background electrolyte containing 10 mM pyridine‐2,6‐dicarboxylic acid and 1 mM 1‐methyl‐3‐tetradecylimidazolium chloride at pH 3.8 was optimized for on‐column complexation of the above‐mentioned metals. The minimum detectable levels of metals ranged from 0.3 to 1.2 μg/mL. The reliability of the method was checked by parallel quantitative determination of the metal content in superoxide dismutase enzymes by graphite furnace or flame atomic absorption spectrophotometry methods.     

Engineering of Therapeutic and Detoxifying Enzymes

Therapeutic enzymes present excellent opportunities for the treatment of human disease, modulation of metabolic pathways and system detoxification. However, current use of enzyme therapy in the clinic is limited as naturally occurring enzymes are seldom optimal for such applications and require substantial improvement by protein engineering. Engineering strategies such as design and directed evolution that have been successfully implemented for industrial biocatalysis can significantly advance the field of therapeutic enzymes, leading to biocatalysts with new-to-nature therapeutic activities, high selectivity, and suitability for medical applications. This minireview highlights case studies of how state-of-the-art and emerging methods in protein engineering are explored for the generation of therapeutic enzymes and discusses gaps and future opportunities in the field of enzyme therapy.     

微塑料介导重金属在陆生植物中迁移及生物效应的影响

随着地膜在现代化农业中的广泛应用,微塑料在土壤中的残留问题日益严重。环境中释放的微塑料可能会与先前存在的重金属相互作用,导致生物效应(生物积累/毒性),并对人类健康和农产品安全构成威胁。目前,大多数研究集中于单一影响因素在土壤系统中的暴露和转化分析,有关微塑料和共存金属对环境联合影响的相当有限。本文综述了微塑料与重金属来源、相互作用机理与影响因素的研究现状,阐述了陆生植物对二者联合污染的生理响应。此外,未来的研究还应重点探讨微塑料与重金属共同在植物上暴露的具体分子机制、通过食物链对人类健康的影响、与其他混合污染物联合作用及微塑料老化过程对重金属迁移动态变化过程的影响。     

Cyanide Biodegradation by Trichoderma harzianum and Cyanide Hydratase Network Analysis

Cyanide is a poisonous and dangerous chemical that binds to metals in metalloenzymes, especially cytochrome C oxidase and, thus, interferes with their functionalities. Different pathways and enzymes are involved during cyanide biodegradation, and cyanide hydratase is one of the enzymes that is involved in such a process. In this study, cyanide resistance and cyanide degradation were studied using 24 fungal strains in order to find the strain with the best capacity for cyanide bioremediation. To confirm the capacity of the tested strains, cyano-bioremediation and the presence of the gene that is responsible for the cyanide detoxification was assessed. From the tested organisms, Trichoderma harzianum (T. harzianum) had a significant capability to resist and degrade cyanide at a 15 mM concentration, where it achieved an efficiency of 75% in 7 days. The gene network analysis of enzymes that are involved in cyanide degradation revealed the involvement of cyanide hydratase, dipeptidase, carbon–nitrogen hydrolase-like protein, and ATP adenylyltransferase. This study revealed that T. harzianum was more efficient in degrading cyanide than the other tested fungal organisms, and molecular analysis confirmed the experimental observations.     

Study of Metallothionein Modified Electrode Surface Behavior in the Presence of Heavy Metal Ions‐Biosensor

An increasing concentration of heavy metals in the environment is a serious problem for human and animal health protection and production of foodstuffs in many countries around the world. The aim of this paper was to suggest a new heavy metal biosensor based on interaction of metals (cadmium and zinc) with metallothionein, which belongs to group of intracellular, high molecular and cysteine‐rich proteins binding heavy metals, using adsorptive transfer stripping (AdTS) differential pulse voltammetry (DPV). Primarily, we studied the electrochemical behavior of MT on the surface of hanging mercury drop electrode by AdTS DPV. Perfect coverage of the electrode surface – forming of the surface assembled monolayer – was probably reached in about 240 s for 10 μM protein concentration. The detection limits of the selected heavy metals (cadmium and zinc), which were analyzed in the presence of the basic electrolyte – 0.5 M NaCl (pH 6.4), were 250 fmol and 350 fmol in 5 μL drop, respectively. In addition, we applied the biosensor to analyze heavy metals in human body liquids (human blood serum and human urine) and to compare with differential pulse anodic stripping voltammetry.     

Recent advances in tuning redox properties of electron transfer centers in metalloenzymes catalyzing the oxygen reduction reaction and H2 oxidation important for fuel cell design

Current fuel cell catalysts for the oxygen reduction reaction (ORR) and H₂ oxidation use precious metals and, for ORR, require high overpotentials. In contrast, metalloenzymes perform their respective reactions at low overpotentials using earth-abundant metals, making metalloenzymes ideal candidates for inspiring electrocatalytic design. Critical to the success of these enzymes are redox-active metal centers surrounding the active site of the enzyme. These electron transfer (ET) centers not only ensure fast ET to or away from the active site, but also tune the catalytic potential of the reaction as observed in multicopper oxidases as well as playing a role in dictating the catalytic bias of the reaction as realized in hydrogenases. This review summarizes recent advances in studying these ET centers in multicopper oxidases and heme-copper oxidases that perform ORR and in hydrogenases carrying out H₂ oxidation. Insights gained from understanding how the reduction potential of the ET centers affects reactivity at the active site in both the enzymes and their models are provided.     

Identification and Directed Development of Non‐Organic Catalysts with Apparent Pan‐Enzymatic Mimicry into Nanozymes for Efficient Prodrug Conversion

Nanozymes, nanoparticles that mimic the natural activity of enzymes, are intriguing academically and are important in the context of the Origin of Life. However, current nanozymes offer mimicry of a narrow range of mammalian enzymes, near‐exclusively performing redox reactions. We present an unexpected discovery of non‐proteinaceous enzymes based on metals, metal oxides, 1D/2D‐materials, and non‐metallic nanomaterials. The specific novelty of these findings lies in the identification of nanozymes with apparent mimicry of diverse mammalian enzymes, including unique pan‐glycosidases. Further novelty lies in the identification of the substrate scope for the lead candidates, specifically in the context of bioconversion of glucuronides, that is, human metabolites and privileged prodrugs in the field of enzyme‐prodrug therapies. Lastly, nanozymes are employed for conversion of glucuronide prodrugs into marketed anti‐inflammatory and antibacterial agents, as well as “nanozyme prodrug therapy” to mediate antibacterial measures.     

Heavy metals as indirect causative factors of capillaropathy

By applying systemic analysis to a set of random variables, representing blood or urine concentrations of certain enzymes, lipids and metals, three direct causative factors of capillaropathy, in its early stage, i.e. leucine amino peptidase, free erythrocyte protoporphyrin and C₃-complement, have been found. The interactions between the early stage of capillaropathy and these factors have been quantitatively described and a formula for prognosing the capillaropathy occurrence has been proposed. It has also been shown that the following heavy metals Pb, Cd, Cr, Cu, Mg, Fe and Ca, through their direct or indirect interactions with C₃-complement, exert an influence on the occurrence and intensity of capillaropathy. Since direct causative factors of a given pathology can serve as its markers, the completeness of the set of the capillaropathy markers, formed from the causative factors, and their contributions to this pathology have been evaluated. The results were obtained by examining a population of male residents chronically exposed to heavy metals (Pb, Cu) in the environment.     

Synthesis of farnesyl diphosphate analogues containing ether-linked photoactive benzophenones and their application in studies of protein prenyltransferases

Protein prenylation is a posttranslational lipid modification in which C(15) and C(20) isoprenoid units are linked to specific protein-derived cysteine residues through a thioether linkage. This process is catalyzed by a class of enzymes called prenyltransferases that are being intensively studied due to the finding that Ras protein is farnesylated coupled with the observation that mutant forms of Ras are implicated in a variety of human cancers. Inhibition of this posttranslational modification may serve as a possible cancer chemotherapy. Here, the syntheses of two new farnesyl diphosphate (FPP) analogues containing photoactive benzophenone groups are described. Each of these compounds was prepared in six steps from dimethylallyl alcohol. Substrate studies, inhibition kinetics, photoinactivation studies, and photolabeling experiments are also included; these experiments were performed with a number of protein prenyltransferases from different sources. A X-ray crystal structure of one of these analogues bound to rat farnesyltransferase illustrates that they are good substrate mimics. Of particular importance, these new analogues can be enzymatically incorporated into Ras-based peptide substrates allowing the preparation of molecules with photoactive isoprenoids that may serve as valuable probes for the study of prenylation function. Photoaffinity labeling of human protein geranylgeranyltransferase with (32)P-labeled forms of these analogues suggests that the C-10 locus of bound geranylgeranyl diphosphate (GGPP) is in close proximity to residues from the beta-subunit of this enzyme. These results clearly demonstrate the utility of these compounds as photoaffinity labeling analogues for the study of a variety of protein prenyltransferases and other enzymes that employ FPP or GGPP as their substrates.     

Gene Expression and Protein Abundance of Nuclear Receptors in Human Intestine and Liver: A New Application for Mass Spectrometry-Based Targeted Proteomics

Background: Unwanted drug-drug interactions (DDIs), as caused by the upregulation of clinically relevant drug metabolizing enzymes and transporter proteins in intestine and liver, have the potential to threaten the therapeutic efficacy and safety of drugs. The molecular mechanism of this undesired but frequently occurring scenario of polypharmacy is based on the activation of nuclear receptors such as the pregnane X receptor (PXR) or the constitutive androstane receptor (CAR) by perpetrator agents such as rifampin, phenytoin or St. John’s wort. However, the expression pattern of nuclear receptors in human intestine and liver remains uncertain, which makes it difficult to predict the extent of potential DDIs. Thus, it was the aim of this study to characterize the gene expression and protein abundance of clinically relevant nuclear receptors, i.e., the aryl hydrocarbon receptor (AhR), CAR, farnesoid X receptor (FXR), glucocorticoid receptor (GR), hepatocyte nuclear factor 4 alpha (HNF4α), PXR and small heterodimer partner (SHP), in the aforementioned organs. Methods: Gene expression analysis was performed by quantitative real-time PCR of jejunal, ileal, colonic and liver samples from eight human subjects. In parallel, a targeted proteomic method was developed and validated in order to determine the respective protein amounts of nuclear receptors in human intestinal and liver samples. The LC-MS/MS method was validated according to the current bioanalytical guidelines and met the criteria regarding linearity (0.1–50 nmol/L), within-day and between-day accuracy and precision, as well as the stability criteria. Results: The developed method was successfully validated and applied to determine the abundance of nuclear receptors in human intestinal and liver samples. Gene expression and protein abundance data demonstrated marked differences in human intestine and liver. On the protein level, only AhR and HNF4α could be detected in gut and liver, which corresponds to their highest gene expression. In transfected cell lines, PXR and CAR could be quantified. Conclusions: The substantially different expression pattern of nuclear receptors in human intestinal and liver tissue may explain the different extent of unwanted DDIs in the dependence on the administration route of drugs.     

Indirect detection of protein-Metal binding: Interaction of serum transferrin with In<Superscript>3+</Superscript> and Bi<Superscript>3+</Superscript>

Transferrins comprise a class of monomeric glycoproteins found in all vertebrates, whose function is iron sequestration and transport. In addition to iron, serum transferrin also binds a variety of other metals and is believed to provide a route for the in vivo delivery of such metals to cells. In the present study, ESI MS is used to investigate interactions between human serum transferrin and two nonferrous metals, indium (a commonly used imaging agent) and bismuth (a component of many antiulcer drugs). While the UV-Vis absorption spectroscopy measurements clearly indicate that both metals bind strongly to transferrin in solution, the metal-protein complex can be detected by ESI MS only for indium, but not for bismuth. Despite the apparently low stability of the transferrin-bismuth complex in the gas phase, presence of such complex in solution can be established by ESI MS indirectly. This is done by monitoring the evolution of charge state distributions of transferrin ions upon acid-induced protein unfolding in the presence and in the absence of the metal in solution. The anomalous instability of the transferrin-bismuth complex in the gas phase is rationalized in terms of conformational differences between this form of transferrin and the holo-forms of this protein produced by binding of metals with smaller ionic radii (e.g., Fe3+ and In3+). The large size of Bi3+ ion is likely to prevent formation of a closed conformation (canonical structure of the holo-protein), resulting in a non-native metal coordination. It is suggested that transferrin retains the open conformation (characteristic of the apo-form) upon binding Bi3+, with only two ligands in the metal coordination sphere provided by the protein itself. This suggestion is corroborated by the results of circular dichroism measurements in the near-UV range. Since the cellular consumption of metals in the transferrin cycle critically depends upon recognition of the holo-protein complex by the transferrin receptor, the noncanonical conformation of the transferrin-bismuth complex may explain very inefficient delivery of bismuth to cells even when a high dosage of bismuth-containing drugs is administered for prolonged periods of time.