Surface chemistry of monochlorinated and dichlorinated benzenes on Si(100)2x1: comparison study of chlorine content and isomeric effects

Using X-ray photoelectron spectroscopy (XPS) and temperature-programmed desorption (TPD), the room temperature (RT) adsorption and thermal evolution of monochlorobenzene (MCB) and 1,3-dichlorobenzene (1,3-DCB) on Si(100)2x1 have been investigated and compared with that of 1,2-dichlorobenzene (1,2-DCB) reported previously. Like 1,2-DCB, the C 1s features observed at 284.6 (C(1)) and 286.0 eV (C(2)) for both MCB and 1,3-DCB could be attributed to the C-H and C-Cl bonds, respectively. The C(1)/C(2) intensity ratios for MCB (5.0) and 1,3-DCB (2.0) are found to follow the stoichiometric ratios of the C-H to C-Cl bonds for MCB and 1,3-DCB, respectively, indicating that both MCB and 1,3-DCB adsorb on Si(100)2x1 molecularly with negligible C-Cl dissociation at RT, in marked contrast to the partial C-Cl dissociation found for 1,2-DCB. Unlike 1,2-DCB with two discernible Cl 2s features at 270.3 and 271.2 eV, a single Cl 2s feature at 271.2 eV is observed for MCB and 1,3-DCB, in accord with the single local chemical environment for Cl. The TPD results show that MCB undergoes molecular desorption exclusively, similar to that found for benzene. Both molecular desorption and recombinative HCl desorption are found for 1,3-DCB, similar to that for 1,2-DCB. Despite the different Cl contents and relative Cl locations on the benzene ring, both MCB and 1,3-DCB exhibit RT adsorption behavior remarkably similar to that of benzene. To explain the C-Cl dissociation observed for 1,2-DCB, we propose a possible transition state involving the Cl atoms located at more physically compatible positions with the surface Si dimers in order to facilitate the conversion of 1,2-DCB (preferentially over 1,3-DCB) to dissociated products at RT. However, the thermal evolution of 1,3-DCB is closer to that of 1,2-DCB than that of MCB and benzene. The breakage of C-Cl bonds is found to occur at a relatively low temperature of 425 K, which suggests a relatively low activation barrier for the dechlorination of 1,3-DCB adspecies. Calculated energetics for 1,4-DCB on Si(100)2x1 shows that double dechlorination is not as favorable a process as those for 1,2-DCB and 1,3-DCB.     

Importance of accurate spectral simulations for the analysis of terahertz spectra: citric acid anhydrate and monohydrate

The terahertz (THz) spectra of crystalline solids are typically uniquely sensitive to the molecular packing configurations, allowing for the detection of polymorphs and hydrates by THz spectroscopic techniques. It is possible, however, that coincident absorptions may be observed between related crystal forms, in which case careful assessment of the lattice vibrations of each system must be performed. Presented here is a THz spectroscopic investigation of citric acid in its anhydrous and monohydrate phases. Remarkably similar features were observed in the THz spectra of both systems, requiring the accurate calculation of the low-frequency vibrational modes by solid-state density functional theory to determine the origins of these spectral features. The results of the simulations demonstrate the necessity of reliable and rigorous methods for THz vibrational modes to ensure the proper evaluation of the THz spectra of molecular solids.     

Theoretical analysis of the terahertz spectrum of the high explosive PETN.

The experimental solid-state terahertz (THz) spectrum (3 to 120 cm(-1)) of the high explosive pentaerythritol tetranitrate (PETN, C(5)H(6)N(4)O(12)) has been modeled using solid-state density functional theory (DFT) calculations. Solid-state DFT, employing the BP density functional, is in best qualitative agreement with the features in the previously reported THz spectrum. The crystal environment of PETN includes numerous intermolecular hydrogen-bonding interactions that contribute to large (up to 80 cm(-1)) calculated shifts in molecular normal-mode positions in the solid state. Comparison of the isolated-molecule and solid-state normal-mode calculations for a series of density functionals reveals the extent to which the inclusion of crystal-packing interactions and the relative motions between molecules are required for correctly reproducing the vibrational structure of solid-state THz spectra. The THz structure below 120 cm(-1) is a combination of both intermolecular (relative rotations and translations) and intramolecular (torsions, large amplitude motions) vibrational motions. Vibrational-mode analyses indicate that the first major feature (67.2 cm(-1)) in the PETN THz spectrum contains all of the optical rotational and translational cell modes and no internal (molecular) vibrational modes.     

Solid-state modeling of the terahertz spectrum of the high explosive HMX

The experimental solid-state terahertz (THz) spectrum (3-120 cm(-1)) of the beta-crystal form of the high explosive octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine (HMX) has been analyzed using solid-state density functional theory calculations. Various density functionals (both generalized gradient approximation and local density approximation) are compared in terms of their abilities to reproduce the experimentally observed solid-state structure and low-frequency vibrational motions. Good-to-excellent agreement between solid-state theory and experiment can be achieved in the THz region where isolated-molecule calculations fail to reproduce the observed spectral features, demonstrating a clear limitation of using isolated-molecule calculations for the assignment of THz frequency motions in molecular solids. The deficiency of isolated-molecule calculations is traced to modification of the molecular structure in the solid state through crystal packing effects and the formation of weak C-H...O hydrogen bonds.     

Assignment of the lowest-lying THz absorption signatures in biotin and lactose monohydrate by solid-state density functional theory

The narrow terahertz (THz) features in crystalline biotin and lactose monohydrate observed in recent experimental studies are considered by solid-state density functional theory (DFT) calculations. The lowest-frequency THz features in both solid-state biotin and lactose monohydrate are assigned to external hindered rotational modes and not to the lowest-frequency internal modes predicted from isolated-molecule calculations. The motions of the molecules associated with these narrow THz features and the interactions between molecules in the hydrogen-bonded networks of these molecular crystals are discussed, and comparisons are made to similar studies on molecular crystals not exhibiting strong intermolecular interactions.     

Electronic excitation spectra of radical anions of cyanoethylenes and cyanobenzenes: symmetry adapted cluster-configuration interaction study

Electronic excitation spectra of the radical anions of cyanoethylenes (trans-dicyanoethylene and tetracyanoethylene) and cyanobenzenes (1,2-dicyanobenzene: o-DCNB, 1,3-dicyanobenzene: m-DCNB, and 1,4-dicyanobenzene: p-DCNB) were studied by the symmetry adapted cluster-configuration interaction (SAC-CI) method. Theoretical calculations predicted positive electron affinities for all the molecules in good agreement with the experimental observations. Electronic excitation spectra of open-shell radicals is a topic that has not been studied as much as such spectra of closed-shell molecules, but this can be easily addressed using SAC-CI theory. The present paper systematically describes the calculation procedures for radical anions by investigating several basis sets, including anion diffuse and Rydberg functions. The calculated excitation energies were in good agreement with the experimental UV∕NIR (near infrared region) spectra, which had been observed by one of the present authors in 2-methyltetrahydrofuran matrix frozen to transparent glassy solids at 77 K. For p-DCNB, the SAC-CI theoretical spectrum agreed particularly well with the experimental spectrum. An extremely weak π*(SOMO) - π* excitation at 1.41 eV predicted in the present work, but had been overlooked in the previous experimental spectrum published in 1988, was confirmed to be real by a careful re-examination of the old spectrum.     

KF-Al2O3催化下2-氨基-6-甲基-4-芳基-1,3-二氰基苯衍生物的合成

以芳醛、丙二腈和丙酮为底物, 乙醇为溶剂, 在70 ℃以KF/Al2O3催化合成了一系列的2-氨基-6-甲基-4-芳基-1,3-二氰基苯衍生物, 产物的结构通过IR, 1H NMR和元素分析确证.     

High-resolution waveguide terahertz spectroscopy of partially oriented organic polycrystalline films

We have characterized the terahertz (THz) vibrational spectroscopy of organic polycrystalline thin films using the new experimental technique of waveguide terahertz time domain spectroscopy (waveguide THz-TDS). The organic materials used in this study are tetracyanoquinodimethane (TCNQ) and 1,3-dicyanobenzene (13DCB). For each material, a thin film is cast onto one of the inner surfaces of a metal parallel plate waveguide (PPWG), followed by measurement of the low-frequency vibrational spectrum using waveguide THz-TDS. The vibrational spectra of the waveguide films are compared to corresponding vibrational spectra of standard pellet samples made by dispersing the organic solid in transparent polyethylene. We show how the waveguide films produce significantly narrower THz vibrational line shapes and reveal additional spectral lines that are obscured by inhomogeneous broadening effects in the pellet samples. When TCNQ waveguide films are cooled to 77 K, vibrational line widths as sharp as 25-30 gigahertz (0.83-1.0 cm(-1)) at the full width at half-maximum are observed, which are among the narrowest far-infrared line widths measured for this material. The origin of the line-narrowing effect for the waveguide films is the suppression of inhomogeneous broadening due to the planar ordering of the film on the waveguide surface. The TCNQ waveguide films are further characterized using optical microscopic evaluation to understand how film morphology affects the THz vibrational spectrum. X-ray diffraction is used to determine the orientation of the polycrystalline TCNQ films on the PPWG surface and to qualitatively explain the different vibrational line strengths observed for the ordered waveguide film relative to the random pellet.     

Magnetic field effect on the exciplex between all-s-trans- 1,4-diphenylbuta- 1,3-diene and 1,4-dicyanobenzene: a comparative study with other alpha,omega-diphenyl polyenes

The exciplex between all-s-trans-1,4-diphenylbuta-1,3-diene and 1,4-dicyanobenzene has been studied by steady state fluorescence along with the magnetic field effect (MFE) and compared with the other alpha,omega-diphenyl polyenes. The exciplex formation and magnetic field effect are dictated by the chain length of the polyene rather than the electronic requirement of these phenomena. The wavelength dependence of the MFE confirms the presence of two different charge-transfer complexes.     

Low-field optically detected EPR spectroscopy of transient photoinduced radical pairs

The effects of simultaneously applied weak static and weak radio frequency magnetic fields on the recombination of transient (<100 ns) radical pairs have been investigated using a low-field optically detected electron paramagnetic resonance technique. Measurements on the photoinduced electron-transfer reaction of perdeuterated pyrene with 1,3-dicyanobenzene using a approximately 0.3 mT radio frequency field at three separate frequencies (5, 20, and 65 MHz) in the presence of 0-4 mT static fields yield spectra that are strikingly sensitive to the frequency of the time-dependent field, to the strength of the static field, and to the relative orientation of the two fields. The spectra are simulated using a modified form of the gamma-COMPUTE algorithm originally devised for calculating magic angle spinning NMR spectra of polycrystalline samples. The essential features of the spectra are consistent with the radical pair mechanism and were satisfactorily simulated using parameters whose values are either known independently or for which estimates are readily available. The calculations included hyperfine couplings to four deuterons in the pyrene cation radical and three protons in the 1,3-dicyanobenzene anion radical. Spin-selective recombination was modeled using an exponential distribution of radical encounter times. The results are discussed in the context of the proposal that radical pair chemistry forms the basis of the magnetoreceptor that allows birds to sense the Earth's magnetic field as a source of compass information during migration.     

Understanding of morphology evolution in local aggregates and neighboring regions for organic photovoltaics

Fluorescence intensity and its ratio mapping combined with time-dependent optical microscopy and atomic force microscopy (AFM) were used to understand morphology evolution of local aggregates and neighboring regions for organic solar cells. Three solvents with different boiling points including chlorobenzene (CB), 1,3-dichlorobenzene (1,3-DCB) and 1,2-dichlorobenzene (1,2-DCB) were used to engineer morphology. These solvents affected morphology evolution factors such as solvent evaporation rate, formation (e.g., growth rate, size and/or quantity) of (6,6)-phenyl-C61-butric-acid methyl ester (PCBM)-rich aggregates, and packing/ordering of poly(3-hexylthiophene) (P3HT). Three local regions (1, 2 and 3) including microscale aggregates and their surrounding areas were identified to explore the mechanism of morphology evolution. Region 1 was the PCBM-rich aggregates; region 2 was the PCBM-deficient area; and region 3 was the area composed of a relatively normal P3HT/PCBM composite beyond region 2 for each solvent. The intensity of fluorescence spectra decreased as region 1 > region 2 > region 3 in thermally annealed (140 °C, 20 min) P3HT/PCBM blend film from each solvent. The highest fluorescence intensity in region 1 was probably caused by the relatively poor phase separation where both PCBM and P3HT formed large isolated domains. The higher fluorescence intensity ratio (720 nm/650 nm) suggested a larger relative amount of PCBM molecules, supported by similar morphologies in fluorescence intensity ratio mapping compared to those in optical images. The fluorescence intensity ratio was with the order of region 1 > region 3 > region 2 in both CB and 1,3-DCB based films, but with region 1 > region 2 > region 3 for the 1,2-DCB based film. The order of effective area taken up by aggregates was CB > 1,3-DCB > 1,2-DCB in annealed (140 °C, 10 min) bulk blend films. The final solar cell performance agreed with morphology results. This work is imperative with regards to revealing the mechanism of morphology evolution in local aggregates and surrounding regions for organic photovoltaic films.     

Search for IR spectral features of less-abundant diisopropylnaphthalenes based on comparison of theoretical and experimental spectra

Experimental and theoretical B3PW91/6-31G* spectra of diisopropylnaphthalene (DIPN) were compared. For the 1,3- and 2,6-DIPN isomers, which were isolated as pure compounds, the theoretical IR spectra were scaled down and were shown to fit the experimental spectra very well. The same scaling factor was used for comparison theoretical and experimental spectra of isomers present in unresolved mixtures of isomers, i.e. 1,4-, 1,5-, 1,6-, 1,7-, and 2,7-DIPNs. For three isomers, 1,2-, 1,8-, and 2,3-DIPN, the experimental IR spectra, unknown so far, were predicted.     

n—π electron-donor—acceptor complexes—IV. The interaction of aliphatic amines with 1,3-dicyanobenzene in n-hexane. The importance of preferred orientation in the stability of the complexes

The stability constants (K) for the electron-donor—acceptor (EDA) complexes formed between aliphatic amines as n-donors and 1,3-dicyanobenzene (1,3-DCB) have been determined in n-hexane as solvent. By means of free energy substitutent parameters and regression analysis, the electronic and steric effects of the N-amine substituents were quantitatively separated. Thus, values of log K were correlated with Taft's polar substituents, σ*, and Hancock's corrected steric substituent constants, E^C_s. Large steric effects are inferred which lead us to propose a preferential site of interaction. This preferential orientation may also explain the greater stability of the 1,3-DCB—amine complexes with respect to the corresponding 1,4-DCB—amine complexes. The proposal is supported by the excess of atomic charge predicted by the Mulliken population analysis, obtained by MNDO calculations for the acceptors and by considering that for weak n—π complexes, the electrostatic energy may be of major importance in the energy of interaction.     

Matrix-isolation infrared spectroscopy of the rotational isomers of 1,2-, 1,3-, and 1,4-benzenedicarboxaldehyde

Rotational isomers (rotamers) of the three structural isomers of benzenedicarboxaldehydes (1,2-, 1,3-, and 1,4-derivatives) have been investigated in detail using matrix-isolation infrared spectroscopy in the 600-4000 cm-1 region, combined with UV photoexcitation and density-functional theory (DFT) calculations. Two rotamers were identified for 1,2- and 1,4-benzenedicarboxaldehyde (1,2- and 1,4-BDA, respectively), while three rotamers were identified for 1,3-benzenedicarboxaldehyde (1,3-BDA) in infrared spectra upon UV-irradiation. Most of the observed infrared bands of each rotamer have been assigned. The energetic relationships among the rotamers were revealed based on the infrared data and the DFT calculations. It is shown that the intramolecular C-H...H-C interaction in the H-syn rotamer or the C-H...O=C hydrogen bonding in the anti rotamer of 1,2-BDA results in the blue-shift of the aldehyde C-H stretching band and the shortening of the aldehyde C-H bond length. Both photoinduced rotational isomerization and rearrangement were observed upon UV irradiation for 1,2-BDA. The structure of the major enol isomer formed as the result of the photochemical rearrangement of 1,2-BDA is determined.     

Racemic iron(III) and cobalt(III) complexes containing a new pentadentate "helmet" phthalocyaninato ligand

Solvothermal reactions of iron(II) acetate tetrahydrate and cobalt(II) acetate tetrahydrate with 1,2-dicyanobenzene in methanol solution result in the formation of racemic six-coordinate iron(III) and cobalt(III) complexes, respectively, with a new bicyclic pentadentate 14,28-[1,3-diiminoisoindolinato]phthalocyaninato ligand.     

Theoretical analysis of the solid-state terahertz spectrum of the high explosive RDX

The solid-state terahertz (THz) spectrum (2–120 cm⁻¹) of α-form cyclotrimethylenetrinitramine (RDX) has been simulated using solid-state density functional calculations at a BP/DNP level of theory. BP/DNP features are in good agreement with both 298 K and a new 7 K polycrystalline RDX THz spectrum. The 7 K RDX spectrum is noteworthy for several mode shifts and spectral detail that greatly aids mode assignments. Previous RDX isolated-molecule calculations (with six calculated modes below 125 cm⁻¹) are incapable of accurately predicting the numerous features in this region, highlighting the importance of solid-state theoretical methods for solid-state terahertz feature assignments.     

Binary systems of C60 with positional isomers 1,2- and 1,3-C6H4Br2

Thermodynamic properties of binary systems of C₆₀ with 1,2- and 1,3-dibromobenzenes have been studied by means of differential scanning calorimetry (DSC). Solid solvates with the compositions C₆₀3(1,2-C₆H₄Br₂); C₆₀2(1,3-C₆H₄Br₂) and C₆₀0.6(1,3-C₆H₄Br₂) have been found. The solvates have been characterised by their enthalpies and temperatures of incongruent melting transition and in part by X-ray powder data. It has been shown that positional isomers 1,2- and 1,3- of the substituted benzenes formed two series of “typical” phase diagrams. Solubility behaviour of C₆₀ in positional isomers has been discussed.     

Gas phase ion chemistry of the heterocyclic isomers 3-methyl-1,2-benzisoxazole and 2-methyl-1,3-benzoxazole

Different mass spectrometric methods, stable isotope labeling, and theoretical calculations have allowed us to structurally characterize and differentiate the isomeric ion structures produced by the two heteroaromatic isomers 3-methyl-1,2-benzisoxazole and 2-methyl-1,3-benzoxazole. The low-energy collision induced dissociation spectra of their molecular ions show large differences. Although both of them produce abundant loss of CO, that involves a carbon atom of the benzene ring, the 2-methyl-1,3-benzoxazole also shows abundant [M-CHO](+) ions at m/z 104, the intensity of which is quite low in the case of its isomer 3-methyl-1,2-benzisoxazole. In addition, MS/MS measurements of fragment ions show characteristic differences that allow distinction among the isomers depending on the original arrangement of the atoms in the five-membered ring. Theoretical ab initio calculations have allowed to determine chemico-physical properties of different ions and to propose a rationalization of the decomposition pathways followed by the two benz(is)oxazole isomers.     

Investigation of the low-frequency vibrations of crystalline tartaric acid using terahertz spectroscopy and solid-state density functional theory

The room temperature and cryogenic terahertz (THz) spectra (10-95 cm(-1)) of l-tartaric acid and dl-tartaric acid were investigated. At 293 K, the l-tartaric acid spectrum showed four absorption features at 36.4, 61.6, 78.7, and 87.3 cm(-1) in the experimental spectrum. Once cooled to 78 K, these features narrowed and shifted to 35.9, 63.4, 81.1, and 90.1 cm(-1). The THz spectrum of dl-tartaric acid is significantly different, containing only a single absorption at 79.9 cm(-1) at room temperature, which shifts to 82.9 cm(-1) at 78 K. Solid-state density functional theory calculations [B3LYP/6-311G(2d,2p)] were performed to simulate the crystalline structure of both molecular solids and to assign the observed spectral features to specific atomic motions. The THz spectrum of l-tartaric acid is particularly interesting in that it contains a theoretically unaccounted for spectral feature that may arise from second-order phonon processes and also exhibits an anomalous red-shifting absorption feature with cooling that is shown to originate from negative thermal expansion of the crystal.     

Variable-temperature nuclear magnetic resonance spectroscopy allows direct observation of carboxylate shift in zinc carboxylate complexes

Tetranuclear complexes [Zn(4)(bdmap)(2)(OOCR)(6)] 1 (R = Me) and 2 (R = Et), where Hbdmap = 1,3-bis(dimethylamino)-2-propanol, were prepared from zinc carboxylates and Hbdmap in tetrahydrofuran (THF). The solid-state structures of isomers 1a and 2a consist of two pairs of zinc atoms, each bridged by two mu-1,2 and one mu-1,1 carboxylate ligands. Two pairs are connected by two tridentate bdmap ligands with oxygen acting as a bridging donating atom. The complexes retain the tetranuclear structure in solution and two dynamic processes are observed from variable-temperature (1)H and (13)C NMR spectra. A low-temperature process (LT dynamics) observed already below 200 K is a coalescence of the mu-1,2 and the mu-1,1 resonances to a single resonance. An additional dynamic process (HT dynamics) is observed above 247 K (1) and 263 K (2), leading to a coalescence of two dimethylamino resonances. Both dynamic processes are rationalized by a mechanism involving changes in the carboxylate coordination mode termed as carboxylate shift. The LT dynamics is ascribed to interconversions of a single mu-1,2 and a single mu-1,1 carboxylate ligation by rotations of 60 degrees. The interconversions involve all carboxylate ligands in 1 and 2. The HT dynamics is ascribed to the exchange of the coordinating geometries of two carboxylate-bridged zinc atoms. We propose a mechanism that starts with a cleavage of the Zn-N coordination bond. The resulting coordinatively unsaturated zinc atom acquires an additional oxygen donor atom by carboxylate shift of mu-1,2 carboxylate to mu-1,1 mode. The activation parameters (DeltaH values in kilocalories per mole, DeltaS values in calories per mole per kelvin) were determined by line-shape analysis of VT NMR spectra: for 1 in THF-d(8), DeltaH(LT) = 8.1(3), DeltaS(LT) = -12(2), DeltaH(HT) = 17.9(2), DeltaS(HT) = 14(1); for 1 in CDCl(3), DeltaH(HT) = 13.6(5), DeltaS(HT) = 3(3); for 1 in CD(2)Cl(2), DeltaH(HT) = 9.9(3), DeltaS(HT) = -8(2); for 2 in THF-d(8), DeltaH(LT) = 11(1), DeltaS(LT) = -5(3), DeltaH(HT) = 19.6(5), DeltaS(HT) = 18(3). Polymeric [Zn(4)(bdmap)(2)(OOCMe)(6)](n) 1-catena crystallizes from a dichloromethane solution of 1. In 1-catena, the zinc atoms are linked into a chain through mu-1,2 and mu-1,1 acetate alternated by mu-1,2 acetate and bdmap.