基于阈值光电子-光离子符合技术的分子离子光谱和解离动力学研究

对电子和离子同时采用速度聚焦电场收集的阈值光电子-光离子符合成像谱仪能够有效提高电子的收集效率和能量分辨率.利用该符合成像谱仪,开展了Xe/Ar/Ne 惰性混合气体及NO 分子的阈值光电子谱、阈值光电子-光离子符合质谱和质量选择的符合光谱等实验研究,精确测量了NO 分子的电离势,并且获得了NO⁺离子振动态分辨的X¹Σ⁺,c³Π和B^{1相似文献}   

Investigation of the structural and dynamic basis of kinesin dissociation from microtubule by atomistic molecular dynamics simulations

Kinesin is a molecular motor that can step processively on microtubules via the hydrolysis of ATP molecules. An important factor characterizing the processivity of the kinesin motor is its dissociation from the microtubule. Here, using all-atom molecular dynamics simulations, we studied the dissociation process of the kinesin head in weak-microtubule-binding or ADP state from tubulin on the basis of the available high-resolution structural data for the head and tubulin. By analyzing the simulated snapshots of the structure of the head-tubulin complex we provided detailed structural and dynamic information for the dissociation process. We found that the dissociation of the head along different directions relative to the tubulin exhibits very different dynamic behaviors. Moreover, the potential forms or energy landscapes of the interaction between the head and tubulin along different directions were determined. The studies have important implications for the detailed molecular mechanism of the dissociation of the kinesin motor and thus are critical to the mechanism of its processivity.     

温度对吡啶离子液体性质影响的分子动力学模拟研究

运用分子动力学模拟方法研究了温度对三种吡啶离子液体[BPy][BF_4]、[HPy][BF_4]、[OPy][BF_4]热力学性质的影响,得到了每个体系的密度、自扩散系数、电导率和黏度等.研究结果表明:随着温度升高,同一种离子液体的密度减小,阴阳离子的自扩散系数明显增大,电导率升高,而黏度降低.在同一温度下,随着阳离子上烷基链的增长,离子液体的密度减小,但热力学性质的变化规律并不完全同步.烷基链长最短的[BPy][BF_4]的自扩散系数和电导率在每个温度下均为最大,而黏度最小;但烷基碳链更长的[OPy][BF_4]和[HPy][BF_4]的各种性质相差不大,甚至当温度大于323 K时,烷基链较长的[OPy][BF_4]的自扩散系数比[HPy][BF_4]的大.     

温度对吡啶离子液体性质影响的分子动力学模拟研究

运用分子动力学模拟方法研究了温度对三种吡啶离子液体[BPy][BF4]、[HPy][BF4]、[OPy][BF4]热力学性质的影响, 得到了每个体系的密度、自扩散系数、电导率和黏度等. 研究结果表明: 随着温度升高, 同一种离子液体的密度减小, 阴阳离子的自扩散系数明显增大, 电导率升高, 而黏度降低. 在同一温度下, 随着阳离子上烷基链的增长, 离子液体的密度减小, 但热力学性质的变化规律并不完全同步. 烷基链长最短的[BPy][BF4]的自扩散系数和电导率在每个温度下均为最大, 而黏度最小; 但烷基碳链更长的[OPy][BF4]和[HPy][BF4]的各种性质相差不大,甚至当温度大于323K时, 烷基链较长的[OPy][BF4]的自扩散系数比[HPy][BF4]的大.     

A study on dissociation of sII krypton hydrate and the effect of hydrocarbon guest molecules as stabilizer by molecular dynamics simulation

In this paper, the characteristics of structure II krypton hydrate are studied by molecular dynamics simulation under isobaric-isothermal (NPT) ensemble condition. The dissociation process of the hydrate is simulated and the effect of krypton (Kr) and various types of hydrocarbon guest molecules (HGMs) on the stability of the hydrate structure is investigated during the simulation time of 1 ns. The studied HGMs are propane, isobutane, neopentane, cyclopropane, cyclobutane, cyclopentane and cyclopentene. The structural change of the Kr-hydrate is analyzed with the radial distribution function, mean square displacement and diffusion coefficient. As temperature increases, the obtained results indicate a gradual increase in the Kr-hydrate cell size, which leads to distortion of the hydrate lattice and escaping of the encapsulated Kr molecules from the hydrate structure to form small bubbles of Kr aggregated in the aqueous solution.     

Equilibrium molecular energies used to obtain molecular dissociation energies and heats of formation within the bond-order correlation approach

Ab initio calculations including electron correlation are still extremely costly, except for the smallest atoms and molecules. Therefore, our purpose in the present study is to employ a bond-order correlation approach to obtain, via equilibrium molecular energies, molecular dissociation energies and heats of formation for some 20 molecules containing C, H, and O atoms, with a maximum number of electrons of around 40. Finally, it is important in the proposed procedure to include electron correlation effects in the basis set choice when determining thermodynamic properties. With the optimum choice of basis set, the average percentage error for some 20 molecules is approximately 20% for heats of formation. For molecular dissociation energies the average error is much smaller: ～0.4%.     

Generalised expressions for the association and dissociation rate constants of molecules with multiple binding sites

ABSTRACT

Many proteins exhibit multiple binding patches. A patch may harbour a key chemical modification site, but may also simply act as a trap for the binding to another site. Here we consider the scenario in which one molecule (enzyme) binds another molecule (substrate) which contains two sites. We present microscopic expressions for the rate at which the enzyme binds to a particular site on the substrate, both for the scenario in which the enzyme directly binds the site without first visiting the other site, and for the case in which it may visit the other site an arbitrary number of times before binding to the site of interest. We also present the expressions for the corresponding dissociation reactions. These expressions can be used to compute in a single rare-event simulation of the dissociation pathway not only both the intrinsic and effective dissociation rate constants but also both association rate constants.     

Enhancement of the molecular nitrogen dissociation and ionization levels by argon mixture in flue nitrogen plasma

In this work, the nitrogen molecular dissociation and ionization levels in Ar/N₂ flue plasma are evaluated as functions of plasma parameters such as Ar mixture quantity and N₂ flux in order to obtain the best condition for various applications such as thin film deposition and material surface modification. This plasma is operated at 10 kV and the nitrogen dissociation rate is determined by analyzing the optical emission of the nitrogen band. For different operating conditions, the dissociation rate [N] of N₂ molecules was enhanced, as the mixture quantity of Ar increased from 0.06 m³/h to 0.9 m³/h and the max of enhancement factor is 4.3. This factor becomes bigger when the N₂ flux becomes bigger. Moreover, the molecular nitrogen ionization density is calculated from the current intensity of the plasma. The ionization density was also enhanced, as the mixture quantity of Ar increased from 0.1 m³/h to 1.5 m³/h, under three different voltages. The max of enhancement factor of 1.96 is much smaller than the factor of the dissociation rate. These results are discussed in terms of the kinetics of the electrons, nitrogen ions, atoms and molecules.     

Structure,thermodynamic and transport properties of imidazolium-based bis(trifluoromethylsulfonyl)imide ionic liquids from molecular dynamics simulations

Molecular dynamics (MD) simulations have been performed in order to investigate the properties of [C _n mim⁺][Tf₂N^?] (n?=?4,?8,?12) ionic liquids (ILs) in a wide temperature range (298.15?498.15?K) and at atmospheric pressure (1 bar). A previously developed methodology for the calculation of the charge distribution that incorporates ab initio quantum mechanical calculations based on density functional theory (DFT) was used to calculate the partial charges for the classical molecular simulations. The wide range of time scales that characterize the segmental dynamics of these ILs, especially at low temperatures, required very long MD simulations, on the order of several tens of nanoseconds, to calculate the thermodynamic (density, thermal expansion, isothermal compressibility), structural (radial distribution functions between the centers of mass of ions and between individual sites, radial-angular distribution functions) and dynamic (relaxation times of the reorientation of the bonds and the torsion angles, self-diffusion coefficients, shear viscosity) properties. The influence of the temperature and the cation's alkyl chain length on the above-mentioned properties was thoroughly investigated. The calculated thermodynamic (primary and derivative) and structural properties are in good agreement with the experimental data, while the extremely sluggish dynamics of the ILs under study renders the calculation of their transport properties a very complicated and challenging task, especially at low temperatures.     

Accurate studies on the full vibrational energy spectra and molecular dissociation energies for some electronic states of halogen molecule

This paper obtains accurate vibrational spectroscopic constants and full vibrational energy spectrum by the algebraic method (AM) for some electronic states of halogen diatomic molecules.Motivated by the recent success of obtaining the dissociation energies of Li 2 molecule by using a new analytical formula,it further extends the formula to study the dissociation energies of halogen diatomic molecules.The results show that the AM spectrum and the theoretical dissociation energies agree well with RKR data and experimental data respectively.     

部分气体双原子分子的完全振动能谱和离解能的精确研究

鉴于气体双原子分子H2、O2、N2和CO的高振动激发态能级和离解行为在实际研究中的重要性,本文应用代数方法(AM)和代数能量方法(AEM),以部分气体双原子分子有限的实验能级[Ev]为基础,获得了H2-X1∑ g、O2-A3∑ u、O2-c1∑-u、N2-X1∑ g和CO-X1∑ 共5个电子态的完全振动能谱{Ev}及其分子的离解能,为研究部分离解气体的物理和化学性质提供了重要的高振动激发态能级和可靠的离解能数据.     

Calculation of the thermodynamic properties of copper by molecular dynamics simulation

It is shown that the thermodynamic characteristics of a system can be accurately described using many-body potentials of the interatomic interaction in molecular dynamics calculations. Original Russian Text ? O.V. Stepanyuk, D.B. Alekseev, A.M. Saletskii, 2009, published in Vestnik Moskovskogo Universiteta. Fizika, 2009, No. 2, pp. 115–116.     

Accurate studies on the full vibrational energy spectra and molecular dissociation energies for some electronic states of N_2 molecule

1 IntroductionAccurate results of high-lying vibrational energies and molecular dissociation energy De of diatomic electronic states are very important for thermodynamics, molecular spec- troscopy, reactive scatterings, and the collision physics of ultracold atoms. For example, the binding energy of the highest bound vibrational state to the ground vibrational state determines the s-wave scattering length. This in turn determines the low- energy (pre- dominantly s-wave) atomic elastic-scatteri…     

NaK分子的完全振动能谱和离解能的研究

使用作者建立的基于微扰理论的代数方法(AM),研究了碱金属异核双原子NaK的 、 两个电子态的振动光谱常数和振动能谱;使用基于AM的代数能量方法（AEM）研究了这些电子态的离解能。结果表明：根据少数精确的实验振动能级[ ],用AM方法获得了精确的分子振动光谱常数集合,还首次获得了包含所有高振动量子态能级的正确的完全振动能谱{ };用AEM方法获得的分子离解能比由文献发表的振动光谱常数计算得到的离解能值更准确。     

NaK分子的完全振动能谱和离解能的研究

使用作者建立的基于微扰理论的代数方法(AM),研究了碱金属异核双原子NaK的 、 两个电子态的振动光谱常数和振动能谱;使用基于AM的代数能量方法（AEM）研究了这些电子态的离解能。结果表明：根据少数精确的实验振动能级[ ],用AM方法获得了精确的分子振动光谱常数集合,还首次获得了包含所有高振动量子态能级的正确的完全振动能谱{ };用AEM方法获得的分子离解能比由文献发表的振动光谱常数计算得到的离解能值更准确。     

Structure and properties of molecular and ionic clusters in vapour over caesium fluoride

The properties of neutral molecules Cs₂F₂, Cs₃F₃, and Cs₄F₄, and positive and negative cluster ions Cs₂F⁺, CsF₂^?, Cs₃F₂⁺, Cs₂F₃^?, Cs₄F₃⁺, and Cs₅F₄⁺ were studied by several of quantum chemical methods implementing density function theory and Möller–Plesset perturbation theory of second and fourth orders. For all species, the equilibrium geometrical structure and vibrational spectra were determined. Different isomers have been revealed for the trimer neutral molecule Cs₃F₃; pentaatomic, both positive and negative, Cs₃F₂⁺, Cs₂F₃^?; and heptaatomic Cs₄F₃⁺ ions. The most abundant isomers in the saturated vapour were determined. Enthalpies of dissociation reactions and enthalpies of formation of the species were obtained.     

Ultrasound mediation for one-pot multi-component synthesis of amidoalkyl naphthols using new magnetic nanoparticles modified by ionic liquids

The ionic liquid 1-methyl-3-(3-trimethoxysilylpropyl) imidazolium acetate was immobilized on the Fe₃O₄ nanoparticles (MNPs-IL-OAc) and used as an efficient new heterogeneous nanocatalyst for the one-pot multi-component synthesis of 1-amidoalkyl-2-naphthols under ultrasound irradiation. The advantages of present combined method are the use of a low scale catalyst, easier work-up procedure, waste-free, green and efficient synthetic entry to excellent yield of products in a high reusability and a short reaction time.     

三硝基甲烷键离解能和生成焓的理论计算

采用密度泛函(DFT)四种交换/相关函数(B3LYP、B3P86、B3PW91和PBE0)结合不同的基函数,求得了三硝基甲烷C-NO2键的离解能(BDE),并且通过合理选择参考物硝基甲烷,设计等键等电子对反应,计算了气相三硝基甲烷分子的生成焓(HOF).与实验数据进行比较,PBE0/6-31g*计算出的BDE值最好,误差为-2.1 kcal mol-1;PBE0密度泛函结合带极化函数的6-31g基组得到的HOF值与实验值吻合的最好(误差在0.1 kcal mol-1以内).     

NaLi分子的完全振动能谱和离解能的研究

文章使用作者建立的基于微扰理论的代数方法(AM),首次研究了碱金属异核双原子分子NaLi的 、 、 三个电子态的振动光谱常数和振动能谱;使用基于AM的代数能量方法（AEM）研究了这些电子态的离解能。结果表明：根据少数精确的实验振动能级[ ],用AM方法获得了精确的分子振动光谱常数集合,还首次获得了包含所有高振动量子态能级的正确的完全振动能谱{ };用AEM方法获得的分子离解能比由文献发表的振动光谱常数计算得到的离解能值更准确。